GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene Symbol | Gene ID | Gene Info |
---|---|---|
Hmx1
|
ENSRNOG00000009154 | H6 family homeobox 1 |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_9037942 | 0.32 |
ENSRNOT00000036770
|
Ier5l
|
immediate early response 5-like |
chr1_-_190370499 | 0.30 |
ENSRNOT00000084389
|
AABR07005618.1
|
|
chr8_+_114866768 | 0.28 |
ENSRNOT00000076731
|
Wdr82
|
WD repeat domain 82 |
chr3_-_141411170 | 0.22 |
ENSRNOT00000017364
|
Nkx2-2
|
NK2 homeobox 2 |
chr10_-_85574889 | 0.22 |
ENSRNOT00000072274
|
LOC691153
|
hypothetical protein LOC691153 |
chr1_-_261446570 | 0.21 |
ENSRNOT00000020182
|
Sfrp5
|
secreted frizzled-related protein 5 |
chr10_+_103874383 | 0.19 |
ENSRNOT00000038935
|
Otop2
|
otopetrin 2 |
chr15_-_34198921 | 0.15 |
ENSRNOT00000024991
|
Nrl
|
neural retina leucine zipper |
chr15_+_93634820 | 0.13 |
ENSRNOT00000093318
|
Cln5
|
ceroid-lipofuscinosis, neuronal 5 |
chr9_-_82699551 | 0.10 |
ENSRNOT00000020673
|
Obsl1
|
obscurin-like 1 |
chr7_+_11737293 | 0.10 |
ENSRNOT00000046059
|
Lingo3
|
leucine rich repeat and Ig domain containing 3 |
chr20_+_12429315 | 0.10 |
ENSRNOT00000001675
|
Pcbp3
|
poly(rC) binding protein 3 |
chr10_-_5196892 | 0.09 |
ENSRNOT00000083982
|
Clec16a
|
C-type lectin domain family 16, member A |
chr10_+_90731865 | 0.08 |
ENSRNOT00000064429
|
Adam11
|
ADAM metallopeptidase domain 11 |
chr10_-_90265017 | 0.08 |
ENSRNOT00000064283
ENSRNOT00000048418 |
Ubtf
|
upstream binding transcription factor, RNA polymerase I |
chr3_+_148579920 | 0.07 |
ENSRNOT00000012432
|
Hck
|
HCK proto-oncogene, Src family tyrosine kinase |
chr17_+_49417067 | 0.07 |
ENSRNOT00000090024
|
Pou6f2
|
POU domain, class 6, transcription factor 2 |
chrX_-_111942749 | 0.07 |
ENSRNOT00000087583
|
AABR07040840.1
|
|
chr10_+_83231238 | 0.07 |
ENSRNOT00000077625
|
Spop
|
speckle type BTB/POZ protein |
chr13_+_47602692 | 0.07 |
ENSRNOT00000038822
|
Fcmr
|
Fc fragment of IgM receptor |
chr1_-_218100272 | 0.06 |
ENSRNOT00000028411
ENSRNOT00000088588 |
Ccnd1
|
cyclin D1 |
chr1_-_2017488 | 0.06 |
ENSRNOT00000021905
|
Tab2
|
TGF-beta activated kinase 1/MAP3K7 binding protein 2 |
chr2_-_25095106 | 0.06 |
ENSRNOT00000051653
ENSRNOT00000085857 |
Aggf1
|
angiogenic factor with G patch and FHA domains 1 |
chr9_+_94324793 | 0.06 |
ENSRNOT00000092493
|
Eif4e2
|
eukaryotic translation initiation factor 4E family member 2 |
chr3_+_11679530 | 0.06 |
ENSRNOT00000074562
ENSRNOT00000071801 |
Eng
|
endoglin |
chr6_-_135829953 | 0.06 |
ENSRNOT00000080623
ENSRNOT00000039059 |
Cdc42bpb
|
CDC42 binding protein kinase beta |
chr4_-_159697207 | 0.06 |
ENSRNOT00000086440
|
Ccnd2
|
cyclin D2 |
chr7_-_122963299 | 0.06 |
ENSRNOT00000090208
|
Rangap1
|
RAN GTPase activating protein 1 |
chr5_-_169658875 | 0.06 |
ENSRNOT00000015840
|
Kcnab2
|
potassium voltage-gated channel subfamily A regulatory beta subunit 2 |
chr14_-_12387102 | 0.05 |
ENSRNOT00000038872
|
Bmp3
|
bone morphogenetic protein 3 |
chr15_-_33333417 | 0.05 |
ENSRNOT00000018982
|
Acin1
|
apoptotic chromatin condensation inducer 1 |
chr3_+_11921715 | 0.05 |
ENSRNOT00000021689
|
Fam129b
|
family with sequence similarity 129, member B |
chr4_+_130172727 | 0.05 |
ENSRNOT00000051121
|
Mitf
|
melanogenesis associated transcription factor |
chr7_-_120380200 | 0.05 |
ENSRNOT00000014878
|
RGD1359634
|
similar to RIKEN cDNA 1700088E04 |
chr3_-_175327689 | 0.05 |
ENSRNOT00000082981
|
Taf4
|
TATA-box binding protein associated factor 4 |
chr12_+_41385241 | 0.05 |
ENSRNOT00000074974
|
Dtx1
|
deltex E3 ubiquitin ligase 1 |
chr6_-_92760018 | 0.05 |
ENSRNOT00000009560
|
Trim9
|
tripartite motif-containing 9 |
chr10_-_47724499 | 0.05 |
ENSRNOT00000085011
|
Rnf112
|
ring finger protein 112 |
chr10_+_104523996 | 0.05 |
ENSRNOT00000065339
ENSRNOT00000086747 |
Itgb4
|
integrin subunit beta 4 |
chr2_-_188553289 | 0.05 |
ENSRNOT00000088822
|
Trim46
|
tripartite motif-containing 46 |
chr15_-_61564695 | 0.05 |
ENSRNOT00000068216
|
Rgcc
|
regulator of cell cycle |
chr7_+_133856101 | 0.04 |
ENSRNOT00000038686
|
Pdzrn4
|
PDZ domain containing RING finger 4 |
chr4_+_58053041 | 0.04 |
ENSRNOT00000072698
|
Mest
|
mesoderm specific transcript |
chr4_+_173115125 | 0.04 |
ENSRNOT00000074673
|
LOC100910575
|
serine-threonine kinase receptor-associated protein-like |
chrX_-_116638508 | 0.04 |
ENSRNOT00000030400
|
Lhfpl1
|
lipoma HMGIC fusion partner-like 1 |
chr7_-_119797098 | 0.04 |
ENSRNOT00000009994
|
Rac2
|
ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) |
chr8_+_117347029 | 0.04 |
ENSRNOT00000047717
|
Impdh2
|
inosine monophosphate dehydrogenase 2 |
chr19_-_58735173 | 0.04 |
ENSRNOT00000030077
|
Pcnx2
|
pecanex homolog 2 (Drosophila) |
chr17_+_26785029 | 0.03 |
ENSRNOT00000022065
|
Eef1e1
|
eukaryotic translation elongation factor 1 epsilon 1 |
chr6_+_26390689 | 0.03 |
ENSRNOT00000079762
ENSRNOT00000091528 |
Ift172
|
intraflagellar transport 172 |
chr5_-_113532878 | 0.03 |
ENSRNOT00000010173
|
Caap1
|
caspase activity and apoptosis inhibitor 1 |
chr4_+_140703619 | 0.03 |
ENSRNOT00000009563
|
Bhlhe40
|
basic helix-loop-helix family, member e40 |
chr17_-_42031265 | 0.03 |
ENSRNOT00000068021
|
Dcdc2
|
doublecortin domain containing 2 |
chr10_-_103685844 | 0.03 |
ENSRNOT00000064284
|
Cd300lf
|
Cd300 molecule-like family member F |
chr10_+_4957326 | 0.03 |
ENSRNOT00000003458
|
Socs1
|
suppressor of cytokine signaling 1 |
chr17_-_9792007 | 0.03 |
ENSRNOT00000021596
|
Rgs14
|
regulator of G-protein signaling 14 |
chr1_-_262014066 | 0.03 |
ENSRNOT00000087083
|
Hps1
|
HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 |
chr10_-_31359699 | 0.03 |
ENSRNOT00000081280
|
Cyfip2
|
cytoplasmic FMR1 interacting protein 2 |
chr2_-_143931940 | 0.03 |
ENSRNOT00000086214
|
Exosc8
|
exosome component 8 |
chr5_+_152681101 | 0.03 |
ENSRNOT00000076052
ENSRNOT00000022574 |
Stmn1
|
stathmin 1 |
chr8_+_33816386 | 0.03 |
ENSRNOT00000011925
|
Ets1
|
ETS proto-oncogene 1, transcription factor |
chr20_-_3299420 | 0.03 |
ENSRNOT00000090999
|
Gnl1
|
G protein nucleolar 1 |
chr5_+_148193710 | 0.02 |
ENSRNOT00000088568
|
Adgrb2
|
adhesion G protein-coupled receptor B2 |
chr11_+_47061354 | 0.02 |
ENSRNOT00000039997
|
Pcnp
|
PEST proteolytic signal containing nuclear protein |
chr1_+_261229347 | 0.02 |
ENSRNOT00000018485
|
Ubtd1
|
ubiquitin domain containing 1 |
chr2_+_57206613 | 0.02 |
ENSRNOT00000082694
ENSRNOT00000046069 |
Nup155
|
nucleoporin 155 |
chr5_-_109621170 | 0.02 |
ENSRNOT00000093007
|
Elavl2
|
ELAV like RNA binding protein 2 |
chr7_+_145117951 | 0.02 |
ENSRNOT00000055272
|
Pde1b
|
phosphodiesterase 1B |
chr8_-_118182559 | 0.02 |
ENSRNOT00000084838
|
Dhx30
|
DExH-box helicase 30 |
chr11_-_86303453 | 0.02 |
ENSRNOT00000071453
|
LOC498122
|
similar to CG15908-PA |
chr15_-_35113678 | 0.02 |
ENSRNOT00000059677
|
Ctsg
|
cathepsin G |
chr15_-_93307420 | 0.02 |
ENSRNOT00000012195
|
Slitrk1
|
SLIT and NTRK-like family, member 1 |
chr14_+_75852060 | 0.02 |
ENSRNOT00000075975
|
Hs3st1
|
heparan sulfate-glucosamine 3-sulfotransferase 1 |
chr9_-_54457753 | 0.02 |
ENSRNOT00000020032
|
Stat1
|
signal transducer and activator of transcription 1 |
chr10_-_4910305 | 0.02 |
ENSRNOT00000033122
|
Rmi2
|
RecQ mediated genome instability 2 |
chr6_+_137184820 | 0.02 |
ENSRNOT00000073796
|
Adssl1
|
adenylosuccinate synthase like 1 |
chr7_-_11478489 | 0.02 |
ENSRNOT00000027272
|
Map2k2
|
mitogen activated protein kinase kinase 2 |
chr10_-_105787803 | 0.02 |
ENSRNOT00000064671
|
Jmjd6
|
jumonji domain containing 6 |
chr10_-_64862268 | 0.02 |
ENSRNOT00000056234
|
Phf12
|
PHD finger protein 12 |
chr1_-_67390141 | 0.02 |
ENSRNOT00000025808
|
Sbk1
|
SH3 domain binding kinase 1 |
chr11_-_53731779 | 0.02 |
ENSRNOT00000002684
|
Ift57
|
intraflagellar transport 57 |
chr10_+_55275411 | 0.02 |
ENSRNOT00000065895
|
Myh10
|
myosin heavy chain 10 |
chr17_-_9791781 | 0.02 |
ENSRNOT00000090536
|
Rgs14
|
regulator of G-protein signaling 14 |
chr8_+_67295727 | 0.02 |
ENSRNOT00000020443
|
Anp32a
|
acidic nuclear phosphoprotein 32 family member A |
chr10_+_15620871 | 0.02 |
ENSRNOT00000089435
ENSRNOT00000066430 |
Nprl3
|
NPR3-like, GATOR1 complex subunit |
chr15_-_18882959 | 0.02 |
ENSRNOT00000066546
ENSRNOT00000088264 |
Flnb
|
filamin B |
chr7_+_119647375 | 0.02 |
ENSRNOT00000046563
|
Kctd17
|
potassium channel tetramerization domain containing 17 |
chr10_+_43224269 | 0.02 |
ENSRNOT00000003473
|
Sap30l
|
SAP30-like |
chr4_-_157252104 | 0.02 |
ENSRNOT00000082739
|
Ptpn6
|
protein tyrosine phosphatase, non-receptor type 6 |
chr13_+_52147555 | 0.02 |
ENSRNOT00000084766
|
Lmod1
|
leiomodin 1 |
chr8_+_114867062 | 0.01 |
ENSRNOT00000074771
|
Wdr82
|
WD repeat domain 82 |
chr7_-_140291620 | 0.01 |
ENSRNOT00000088323
|
Adcy6
|
adenylate cyclase 6 |
chr2_+_69415057 | 0.01 |
ENSRNOT00000013152
|
Cdh10
|
cadherin 10 |
chrX_+_156463953 | 0.01 |
ENSRNOT00000079889
|
Flna
|
filamin A |
chr10_-_109802739 | 0.01 |
ENSRNOT00000054951
|
Sirt7
|
sirtuin 7 |
chr4_+_61912210 | 0.01 |
ENSRNOT00000013569
|
Bpgm
|
bisphosphoglycerate mutase |
chr11_-_38274217 | 0.01 |
ENSRNOT00000002206
|
Ripk4
|
receptor-interacting serine-threonine kinase 4 |
chr5_-_150439959 | 0.01 |
ENSRNOT00000014506
|
Gmeb1
|
glucocorticoid modulatory element binding protein 1 |
chr3_-_122947075 | 0.01 |
ENSRNOT00000082369
|
Pced1a
|
PC-esterase domain containing 1A |
chr1_-_219853329 | 0.01 |
ENSRNOT00000026169
|
Lrfn4
|
leucine rich repeat and fibronectin type III domain containing 4 |
chr2_-_197935567 | 0.01 |
ENSRNOT00000085404
|
Rprd2
|
regulation of nuclear pre-mRNA domain containing 2 |
chr20_+_3299730 | 0.01 |
ENSRNOT00000078538
|
Prr3
|
proline rich 3 |
chr14_-_10749120 | 0.01 |
ENSRNOT00000003046
|
Cops4
|
COP9 signalosome subunit 4 |
chr5_+_2813131 | 0.01 |
ENSRNOT00000009530
|
Sbspon
|
somatomedin B and thrombospondin, type 1 domain containing |
chr16_+_71810377 | 0.01 |
ENSRNOT00000041330
|
Adam9
|
ADAM metallopeptidase domain 9 |
chr16_-_49820235 | 0.01 |
ENSRNOT00000029628
|
Sorbs2
|
sorbin and SH3 domain containing 2 |
chr16_-_3912148 | 0.01 |
ENSRNOT00000014941
|
Anxa11
|
annexin A11 |
chr13_+_57131395 | 0.01 |
ENSRNOT00000017884
|
Kcnt2
|
potassium sodium-activated channel subfamily T member 2 |
chr15_+_33544312 | 0.01 |
ENSRNOT00000020409
|
Bcl2l2
|
Bcl2-like 2 |
chr17_+_33408722 | 0.01 |
ENSRNOT00000023691
|
Gmds
|
GDP-mannose 4, 6-dehydratase |
chrX_-_105622156 | 0.01 |
ENSRNOT00000029511
|
Armcx2
|
armadillo repeat containing, X-linked 2 |
chr3_+_2490518 | 0.01 |
ENSRNOT00000015099
|
Anapc2
|
anaphase promoting complex subunit 2 |
chr20_+_5509059 | 0.01 |
ENSRNOT00000065349
|
Kifc1
|
kinesin family member C1 |
chr20_-_3299580 | 0.01 |
ENSRNOT00000050373
|
Gnl1
|
G protein nucleolar 1 |
chr8_-_53899669 | 0.01 |
ENSRNOT00000082257
|
Ncam1
|
neural cell adhesion molecule 1 |
chr5_+_135074297 | 0.01 |
ENSRNOT00000000157
|
Pik3r3
|
phosphoinositide-3-kinase regulatory subunit 3 |
chr13_+_52553775 | 0.01 |
ENSRNOT00000011991
|
Csrp1
|
cysteine and glycine-rich protein 1 |
chr10_-_31419235 | 0.01 |
ENSRNOT00000059496
|
Cyfip2
|
cytoplasmic FMR1 interacting protein 2 |
chr8_+_117062884 | 0.01 |
ENSRNOT00000082452
ENSRNOT00000071540 |
Nicn1
|
nicolin 1 |
chr1_-_213907144 | 0.01 |
ENSRNOT00000054874
|
Sigirr
|
single Ig and TIR domain containing |
chr2_+_205553163 | 0.01 |
ENSRNOT00000039572
|
Nras
|
neuroblastoma RAS viral oncogene homolog |
chr8_+_50310405 | 0.01 |
ENSRNOT00000073507
|
Sik3
|
SIK family kinase 3 |
chr19_+_56435577 | 0.00 |
ENSRNOT00000092145
|
Rhou
|
ras homolog family member U |
chr10_+_109904259 | 0.00 |
ENSRNOT00000073886
|
Rac3
|
ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) |
chr7_-_140454268 | 0.00 |
ENSRNOT00000081468
|
Wnt10b
|
wingless-type MMTV integration site family, member 10B |
chr6_-_26792808 | 0.00 |
ENSRNOT00000010403
|
Abhd1
|
abhydrolase domain containing 1 |
chr19_+_24044103 | 0.00 |
ENSRNOT00000004621
|
Rnf150
|
ring finger protein 150 |
chr3_-_177089199 | 0.00 |
ENSRNOT00000020873
|
Zfp512b
|
zinc finger protein 512B |
chr7_-_121058029 | 0.00 |
ENSRNOT00000068033
|
Cbx6
|
chromobox 6 |
chr19_+_37252843 | 0.00 |
ENSRNOT00000021145
|
E2f4
|
E2F transcription factor 4 |
chr7_+_120140460 | 0.00 |
ENSRNOT00000040513
ENSRNOT00000073905 |
Pdxp
|
pyridoxal phosphatase |
chr12_+_17735740 | 0.00 |
ENSRNOT00000001775
|
Pdgfa
|
platelet derived growth factor subunit A |
chr1_+_50828585 | 0.00 |
ENSRNOT00000086441
ENSRNOT00000023290 ENSRNOT00000035402 |
LOC108348175
|
protein quaking-like |
chr5_+_48374096 | 0.00 |
ENSRNOT00000010172
|
Gabrr1
|
gamma-aminobutyric acid type A receptor rho 1 subunit |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.2 | GO:0021529 | spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530) |
0.1 | 0.2 | GO:2000041 | Wnt signaling pathway involved in digestive tract morphogenesis(GO:0044333) regulation of planar cell polarity pathway involved in axis elongation(GO:2000040) negative regulation of planar cell polarity pathway involved in axis elongation(GO:2000041) |
0.0 | 0.1 | GO:0007468 | regulation of rhodopsin gene expression(GO:0007468) |
0.0 | 0.1 | GO:1902659 | regulation of glucose mediated signaling pathway(GO:1902659) |
0.0 | 0.1 | GO:1904426 | positive regulation of GTP binding(GO:1904426) |
0.0 | 0.1 | GO:1905072 | cardiac jelly development(GO:1905072) |
0.0 | 0.0 | GO:0035544 | negative regulation of SNARE complex assembly(GO:0035544) |
0.0 | 0.0 | GO:0003330 | regulation of extracellular matrix constituent secretion(GO:0003330) positive regulation of extracellular matrix constituent secretion(GO:0003331) |
0.0 | 0.0 | GO:0010070 | zygote asymmetric cell division(GO:0010070) |
0.0 | 0.3 | GO:0080182 | histone H3-K4 trimethylation(GO:0080182) |
0.0 | 0.1 | GO:1901098 | positive regulation of autophagosome maturation(GO:1901098) |
0.0 | 0.1 | GO:0030263 | apoptotic chromosome condensation(GO:0030263) |
0.0 | 0.1 | GO:0000320 | re-entry into mitotic cell cycle(GO:0000320) |
0.0 | 0.1 | GO:0071688 | striated muscle myosin thick filament assembly(GO:0071688) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.3 | GO:0072357 | PTW/PP1 phosphatase complex(GO:0072357) |
0.0 | 0.1 | GO:1990723 | cytoplasmic periphery of the nuclear pore complex(GO:1990723) |
0.0 | 0.1 | GO:0061574 | ASAP complex(GO:0061574) |
0.0 | 0.1 | GO:1990393 | 3M complex(GO:1990393) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.1 | GO:1990829 | C-rich single-stranded DNA binding(GO:1990829) |
0.0 | 0.1 | GO:0005534 | galactose binding(GO:0005534) |
0.0 | 0.3 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.0 | 0.1 | GO:0043522 | leucine zipper domain binding(GO:0043522) |