GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxa7 Links NCBI RGD Ensembl	ENSRNOG00000049858	homeobox A7
Hoxc8 Links NCBI RGD Ensembl	ENSRNOG00000028619	homeobox C8

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Hoxa7	rn6_v1_chr4_-_82271893_82271893	0.57	3.2e-01	Click!
Hoxc8	rn6_v1_chr7_+_144605058_144605058	-0.47	4.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr18_+_14757679 Show fit	0.22	ENSRNOT00000071364	Mapre2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein, RP/EB family, member 2
chr1_+_141767940 Show fit	0.21	ENSRNOT00000064034	Zfp710 Links NCBI RGD Ensembl Show fit	zinc finger protein 710
chr2_-_33025271 Show fit	0.14	ENSRNOT00000074941	NEWGENE_1310139 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr10_+_61685645 Show fit	0.13	ENSRNOT00000003933	Mnt Links NCBI RGD Ensembl Show fit	MAX network transcriptional repressor
chr6_+_64789940 Show fit	0.13	ENSRNOT00000085979 ENSRNOT00000059739 ENSRNOT00000051908 ENSRNOT00000082793 ENSRNOT00000078583 ENSRNOT00000091677 ENSRNOT00000093241	Nrcam Links NCBI RGD Ensembl Show fit	neuronal cell adhesion molecule
chr5_+_25725683 Show fit	0.13	ENSRNOT00000087602	LOC679087 Links NCBI RGD Ensembl Show fit	similar to swan
chr15_+_62406873 Show fit	0.13	ENSRNOT00000047572	Olfm4 Links NCBI RGD Ensembl Show fit	olfactomedin 4
chr1_+_99505677 Show fit	0.12	ENSRNOT00000024645	Zfp719 Links NCBI RGD Ensembl Show fit	zinc finger protein 719
chr1_+_217345545 Show fit	0.12	ENSRNOT00000071741	Shank2 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 2
chr9_+_67234303 Show fit	0.11	ENSRNOT00000050179	Abi2 Links NCBI RGD Ensembl Show fit	abl-interactor 2
chr1_-_43638161 Show fit	0.11	ENSRNOT00000024460	Ipcef1 Links NCBI RGD Ensembl Show fit	interaction protein for cytohesin exchange factors 1
chr15_-_30147793 Show fit	0.11	ENSRNOT00000060399	AABR07017693.1 Links NCBI RGD Ensembl Show fit
chr8_-_128754514 Show fit	0.11	ENSRNOT00000025019	Cx3cr1 Links NCBI RGD Ensembl Show fit	C-X3-C motif chemokine receptor 1
chr5_+_25253010 Show fit	0.10	ENSRNOT00000061333	Rbm12b Links NCBI RGD Ensembl Show fit	RNA binding motif protein 12B
chr6_+_106052212 Show fit	0.10	ENSRNOT00000010626	Sipa1l1 Links NCBI RGD Ensembl Show fit	signal-induced proliferation-associated 1 like 1
chr1_-_236729412 Show fit	0.10	ENSRNOT00000054794	Prune2 Links NCBI RGD Ensembl Show fit	prune homolog 2
chr4_-_18396035 Show fit	0.10	ENSRNOT00000034692	Sema3a Links NCBI RGD Ensembl Show fit	semaphorin 3A
chr10_-_87286387 Show fit	0.09	ENSRNOT00000044206	Krt28 Links NCBI RGD Ensembl Show fit	keratin 28
chr3_+_148654668 Show fit	0.08	ENSRNOT00000081370	Tm9sf4 Links NCBI RGD Ensembl Show fit	transmembrane 9 superfamily member 4
chr1_-_66212418 Show fit	0.08	ENSRNOT00000026074	LOC691722 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691722
chr10_-_74679858 Show fit	0.08	ENSRNOT00000003859	Ppm1e Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1E
chr3_-_141411170 Show fit	0.08	ENSRNOT00000017364	Nkx2-2 Links NCBI RGD Ensembl Show fit	NK2 homeobox 2
chr9_+_71915421 Show fit	0.08	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr12_-_52658275 Show fit	0.08	ENSRNOT00000041981	Zfp605 Links NCBI RGD Ensembl Show fit	zinc finger protein 605
chr12_-_45801842 Show fit	0.07	ENSRNOT00000078837	AABR07036513.1 Links NCBI RGD Ensembl Show fit
chr17_+_11683862 Show fit	0.07	ENSRNOT00000024766	Msx2 Links NCBI RGD Ensembl Show fit	msh homeobox 2
chr9_+_73378057 Show fit	0.07	ENSRNOT00000043627 ENSRNOT00000045766 ENSRNOT00000092445 ENSRNOT00000037974	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr11_-_61287914 Show fit	0.07	ENSRNOT00000086286	Spice1 Links NCBI RGD Ensembl Show fit	spindle and centriole associated protein 1
chr8_+_71591360 Show fit	0.07	ENSRNOT00000090096	Csnk1g1 Links NCBI RGD Ensembl Show fit	casein kinase 1, gamma 1
chr8_-_69508024 Show fit	0.07	ENSRNOT00000083564	AABR07070416.3 Links NCBI RGD Ensembl Show fit
chr15_-_55209342 Show fit	0.06	ENSRNOT00000021752	Rb1 Links NCBI RGD Ensembl Show fit	RB transcriptional corepressor 1
chr2_+_72006099 Show fit	0.06	ENSRNOT00000034044	Cdh12 Links NCBI RGD Ensembl Show fit	cadherin 12
chr3_+_48096954 Show fit	0.06	ENSRNOT00000068238 ENSRNOT00000064344 ENSRNOT00000044638	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chr5_-_133959447 Show fit	0.06	ENSRNOT00000011985	Cyp4x1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 4, subfamily x, polypeptide 1
chr8_+_33239139 Show fit	0.06	ENSRNOT00000011589	Arhgap32 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 32
chr10_-_62184874 Show fit	0.06	ENSRNOT00000004229	Rpa1 Links NCBI RGD Ensembl Show fit	replication protein A1
chr3_-_15278645 Show fit	0.06	ENSRNOT00000032204	Ttll11 Links NCBI RGD Ensembl Show fit	tubulin tyrosine ligase like11
chr2_+_145174876 Show fit	0.06	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr9_+_84203072 Show fit	0.06	ENSRNOT00000018882	Sgpp2 Links NCBI RGD Ensembl Show fit	sphingosine-1-phosphate phosphatase 2
chr4_+_94696965 Show fit	0.05	ENSRNOT00000064696	Grid2 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor delta type subunit 2
chr9_+_73418607 Show fit	0.05	ENSRNOT00000092547	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr4_+_148208260 Show fit	0.05	ENSRNOT00000015742	Zfand4 Links NCBI RGD Ensembl Show fit	zinc finger AN1-type containing 4
chr10_-_46172166 Show fit	0.05	ENSRNOT00000091052 ENSRNOT00000004412	Flcn Links NCBI RGD Ensembl Show fit	folliculin
chr4_+_157524423 Show fit	0.05	ENSRNOT00000036654	Zfp384 Links NCBI RGD Ensembl Show fit	zinc finger protein 384
chr8_-_7426611 Show fit	0.05	ENSRNOT00000031492	Arhgap42 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 42
chr18_+_30880020 Show fit	0.05	ENSRNOT00000060468	Pcdhgb5 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily B, 5
chr5_+_6373583 Show fit	0.05	ENSRNOT00000084749	AABR07046778.1 Links NCBI RGD Ensembl Show fit
chr2_-_185852759 Show fit	0.04	ENSRNOT00000049461	Mab21l2 Links NCBI RGD Ensembl Show fit	mab-21 like 2
chr14_+_39964588 Show fit	0.04	ENSRNOT00000003240	Gabrg1 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor gamma 1 subunit
chr8_-_39460844 Show fit	0.04	ENSRNOT00000048875	Pknox2 Links NCBI RGD Ensembl Show fit	PBX/knotted 1 homeobox 2
chr1_-_241046249 Show fit	0.04	ENSRNOT00000067796 ENSRNOT00000081866	Smc5 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 5
chr3_-_90751055 Show fit	0.04	ENSRNOT00000040741	LOC499843 Links NCBI RGD Ensembl Show fit	LRRGT00091
chr18_+_30820321 Show fit	0.04	ENSRNOT00000060472	Pcdhga3 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily A, 3
chr20_-_29184185 Show fit	0.04	ENSRNOT00000090771	Mcu Links NCBI RGD Ensembl Show fit	mitochondrial calcium uniporter
chr4_-_150485781 Show fit	0.04	ENSRNOT00000008763	Zfp248 Links NCBI RGD Ensembl Show fit	zinc finger protein 248
chr12_+_25430464 Show fit	0.04	ENSRNOT00000002020	Gtf2i Links NCBI RGD Ensembl Show fit	general transcription factor II I
chrM_+_9870 Show fit	0.03	ENSRNOT00000044582	Mt-nd4l Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH 4L dehydrogenase
chrX_-_69218526 Show fit	0.03	ENSRNOT00000092321 ENSRNOT00000074071 ENSRNOT00000092571	Pja1 Links NCBI RGD Ensembl Show fit	praja ring finger ubiquitin ligase 1
chr5_+_58661049 Show fit	0.03	ENSRNOT00000078274	Unc13b Links NCBI RGD Ensembl Show fit	unc-13 homolog B
chr1_+_101599018 Show fit	0.03	ENSRNOT00000028494	Fut1 Links NCBI RGD Ensembl Show fit	fucosyltransferase 1
chr1_+_101603222 Show fit	0.03	ENSRNOT00000033278	Izumo1 Links NCBI RGD Ensembl Show fit	izumo sperm-egg fusion 1
chr18_+_30592794 Show fit	0.03	ENSRNOT00000027133	Pcdhb22 Links NCBI RGD Ensembl Show fit	protocadherin beta 22
chrX_+_84064427 Show fit	0.03	ENSRNOT00000046364	Zfp711 Links NCBI RGD Ensembl Show fit	zinc finger protein 711
chr2_-_35870578 Show fit	0.03	ENSRNOT00000066069	Rnf180 Links NCBI RGD Ensembl Show fit	ring finger protein 180
chr3_-_72081079 Show fit	0.03	ENSRNOT00000007914	Tmx2 Links NCBI RGD Ensembl Show fit	thioredoxin-related transmembrane protein 2
chr8_+_82038967 Show fit	0.03	ENSRNOT00000079535	Myo5a Links NCBI RGD Ensembl Show fit	myosin VA
chr6_+_2216623 Show fit	0.03	ENSRNOT00000008045	Rmdn2 Links NCBI RGD Ensembl Show fit	regulator of microtubule dynamics 2
chr1_-_266428239 Show fit	0.03	ENSRNOT00000027160	Cyp17a1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 17, subfamily a, polypeptide 1
chr5_+_22392732 Show fit	0.03	ENSRNOT00000087182	Clvs1 Links NCBI RGD Ensembl Show fit	clavesin 1
chr3_-_52447622 Show fit	0.02	ENSRNOT00000083552	Scn1a Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel alpha subunit 1
chr8_+_32188617 Show fit	0.02	ENSRNOT00000081145	Zbtb44 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 44
chr2_-_57935334 Show fit	0.02	ENSRNOT00000022319 ENSRNOT00000085599 ENSRNOT00000077790 ENSRNOT00000035821	Slc1a3 Links NCBI RGD Ensembl Show fit	solute carrier family 1 member 3
chr2_+_220432037 Show fit	0.02	ENSRNOT00000021988	Frrs1 Links NCBI RGD Ensembl Show fit	ferric-chelate reductase 1
chr18_-_74059533 Show fit	0.02	ENSRNOT00000038767	RGD1308601 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein
chr1_+_166141954 Show fit	0.02	ENSRNOT00000042524	Fchsd2 Links NCBI RGD Ensembl Show fit	FCH and double SH3 domains 2
chr2_+_248398917 Show fit	0.02	ENSRNOT00000045855	Gbp1 Links NCBI RGD Ensembl Show fit	guanylate binding protein 1
chr18_+_59748444 Show fit	0.02	ENSRNOT00000024752	St8sia3 Links NCBI RGD Ensembl Show fit	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
chr3_-_64095120 Show fit	0.02	ENSRNOT00000016837	Sestd1 Links NCBI RGD Ensembl Show fit	SEC14 and spectrin domain containing 1
chr13_-_89545182 Show fit	0.02	ENSRNOT00000078402	Pcp4l1 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 4-like 1
chr3_+_15560712 Show fit	0.02	ENSRNOT00000010218	Ptgs1 Links NCBI RGD Ensembl Show fit	prostaglandin-endoperoxide synthase 1
chr18_+_79773608 Show fit	0.02	ENSRNOT00000088484	Zfp516 Links NCBI RGD Ensembl Show fit	zinc finger protein 516
chr20_+_3155652 Show fit	0.02	ENSRNOT00000042882	RT1-S2 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus S2
chr5_+_58995249 Show fit	0.01	ENSRNOT00000023411	Ccdc107 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 107
chr1_+_69841998 Show fit	0.01	ENSRNOT00000072231	Zfp773-ps1 Links NCBI RGD Ensembl Show fit	zinc finger protein 773, pseudogene 1
chr3_-_160561741 Show fit	0.01	ENSRNOT00000018364	Kcns1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel, modifier subfamily S, member 1
chr6_+_44225233 Show fit	0.01	ENSRNOT00000066593	Kidins220 Links NCBI RGD Ensembl Show fit	kinase D-interacting substrate 220
chr3_-_45169118 Show fit	0.01	ENSRNOT00000086371	Ccdc148 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 148
chr18_-_26656879 Show fit	0.01	ENSRNOT00000086729	Epb41l4a Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4A
chrX_-_36884748 Show fit	0.01	ENSRNOT00000065678	Phka2 Links NCBI RGD Ensembl Show fit	phosphorylase kinase, alpha 2
chr1_+_255579474 Show fit	0.01	ENSRNOT00000024465	Btaf1 Links NCBI RGD Ensembl Show fit	B-TFIID TATA-box binding protein associated factor 1
chr11_-_29710849 Show fit	0.01	ENSRNOT00000029345	Krtap11-1 Links NCBI RGD Ensembl Show fit	keratin associated protein 11-1
chr3_-_7498555 Show fit	0.01	ENSRNOT00000017725	Barhl1 Links NCBI RGD Ensembl Show fit	BarH-like homeobox 1
chr3_-_148057523 Show fit	0.01	ENSRNOT00000055408	Defb24 Links NCBI RGD Ensembl Show fit	defensin beta 24
chr17_+_34704616 Show fit	0.01	ENSRNOT00000090706 ENSRNOT00000083674 ENSRNOT00000077110	Exoc2 Links NCBI RGD Ensembl Show fit	exocyst complex component 2
chrX_+_9956370 Show fit	0.01	ENSRNOT00000082316	LOC100910506 Links NCBI RGD Ensembl Show fit	peripheral plasma membrane protein CASK-like
chr11_-_82893845 Show fit	0.01	ENSRNOT00000075306	LOC100912571 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4 gamma 1-like
chrX_-_32095867 Show fit	0.01	ENSRNOT00000049947 ENSRNOT00000080730	Ace2 Links NCBI RGD Ensembl Show fit	angiotensin I converting enzyme 2
chr10_+_76320041 Show fit	0.01	ENSRNOT00000037693	Coil Links NCBI RGD Ensembl Show fit	coilin
chr1_+_201337416 Show fit	0.01	ENSRNOT00000067742	Btbd16 Links NCBI RGD Ensembl Show fit	BTB domain containing 16
chr16_+_24978527 Show fit	0.01	ENSRNOT00000019363	Tma16 Links NCBI RGD Ensembl Show fit	translation machinery associated 16 homolog
chr8_+_36850324 Show fit	0.01	ENSRNOT00000060448	Pate2 Links NCBI RGD Ensembl Show fit	prostate and testis expressed 2
chr1_-_23556241 Show fit	0.00	ENSRNOT00000072943	LOC100910446 Links NCBI RGD Ensembl Show fit	syntaxin-7-like
chr9_+_71247781 Show fit	0.00	ENSRNOT00000049654	Creb1 Links NCBI RGD Ensembl Show fit	cAMP responsive element binding protein 1
chr4_+_68608137 Show fit	0.00	ENSRNOT00000036398	Wee2 Links NCBI RGD Ensembl Show fit	WEE1 homolog 2
chr10_-_71441389 Show fit	0.00	ENSRNOT00000003699	Tada2a Links NCBI RGD Ensembl Show fit	transcriptional adaptor 2A
chr8_+_81863619 Show fit	0.00	ENSRNOT00000080608	Fam214a Links NCBI RGD Ensembl Show fit	family with sequence similarity 214, member A
chr3_-_166994286 Show fit	0.00	ENSRNOT00000081593	Zfp217 Links NCBI RGD Ensembl Show fit	zinc finger protein 217
chr10_+_95770154 Show fit	0.00	ENSRNOT00000030300	Helz Links NCBI RGD Ensembl Show fit	helicase with zinc finger
chr16_+_50022998 Show fit	0.00	ENSRNOT00000087986	Tlr3 Links NCBI RGD Ensembl Show fit	toll-like receptor 3
chr2_-_60657712 Show fit	0.00	ENSRNOT00000040348	Rai14 Links NCBI RGD Ensembl Show fit	retinoic acid induced 14
chr19_-_37528011 Show fit	0.00	ENSRNOT00000059628	Agrp Links NCBI RGD Ensembl Show fit	agouti related neuropeptide
chr20_+_3830164 Show fit	0.00	ENSRNOT00000045533 ENSRNOT00000084117	Col11a2 Links NCBI RGD Ensembl Show fit	collagen type XI alpha 2 chain
chr2_+_196462554 Show fit	0.00	ENSRNOT00000056380	Fam63a Links NCBI RGD Ensembl Show fit	family with sequence similarity 63, member A

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0021530	spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530)
0.0	0.1	GO:0002282	microglial cell activation involved in immune response(GO:0002282)
0.0	0.1	GO:0021888	cerebral cortex tangential migration using cell-axon interactions(GO:0021824) gonadotrophin-releasing hormone neuronal migration to the hypothalamus(GO:0021828) hypothalamic tangential migration using cell-axon interactions(GO:0021856) hypothalamus gonadotrophin-releasing hormone neuron differentiation(GO:0021886) hypothalamus gonadotrophin-releasing hormone neuron development(GO:0021888) facioacoustic ganglion development(GO:1903375)
0.0	0.1	GO:0035880	embryonic nail plate morphogenesis(GO:0035880)
0.0	0.1	GO:0071922	establishment of sister chromatid cohesion(GO:0034085) cohesin loading(GO:0071921) regulation of cohesin loading(GO:0071922) regulation of hepatocyte apoptotic process(GO:1903943) negative regulation of hepatocyte apoptotic process(GO:1903944)
0.0	0.0	GO:1901856	negative regulation of cellular respiration(GO:1901856) regulation of post-translational protein modification(GO:1901873)
0.0	0.1	GO:2000601	positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.0	0.0	GO:1904694	negative regulation of vascular smooth muscle contraction(GO:1904694)
0.0	0.1	GO:0045162	clustering of voltage-gated sodium channels(GO:0045162)
0.0	0.1	GO:2000389	regulation of neutrophil extravasation(GO:2000389)
0.0	0.0	GO:0060988	lipid tube assembly(GO:0060988)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0097442	CA3 pyramidal cell dendrite(GO:0097442)
0.0	0.1	GO:0031209	SCAR complex(GO:0031209)
0.0	0.1	GO:0035189	Rb-E2F complex(GO:0035189)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019960	C-X3-C chemokine binding(GO:0019960)
0.0	0.1	GO:0042392	sphingosine-1-phosphate phosphatase activity(GO:0042392)
0.0	0.2	GO:0086080	protein binding involved in heterotypic cell-cell adhesion(GO:0086080)
0.0	0.1	GO:0061676	importin-alpha family protein binding(GO:0061676)
0.0	0.0	GO:0015292	uniporter activity(GO:0015292)
0.0	0.0	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)