GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxb6 Links NCBI RGD Ensembl	ENSRNOG00000007823	homeo box B6

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Hoxb6	rn6_v1_chr10_+_84147836_84147836	0.78	1.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_168078748 Show fit	0.07	ENSRNOT00000024798	Uts2 Links NCBI RGD Ensembl Show fit	urotensin 2
chr4_-_82133605 Show fit	0.06	ENSRNOT00000008023	NEWGENE_2813 Links NCBI RGD Ensembl Show fit	homeobox A2
chr2_+_204427608 Show fit	0.06	ENSRNOT00000083374	Nhlh2 Links NCBI RGD Ensembl Show fit	nescient helix loop helix 2
chr14_+_39368530 Show fit	0.05	ENSRNOT00000084367	Cox7b2 Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 7B2
chr19_-_37427989 Show fit	0.04	ENSRNOT00000022863	Tppp3 Links NCBI RGD Ensembl Show fit	tubulin polymerization-promoting protein family member 3
chr17_+_69960160 Show fit	0.04	ENSRNOT00000023887	Ucn3 Links NCBI RGD Ensembl Show fit	urocortin 3
chr9_+_45605552 Show fit	0.03	ENSRNOT00000059587	NMS Links NCBI RGD Ensembl Show fit	neuromedin S
chr4_-_28437676 Show fit	0.03	ENSRNOT00000012995	Hepacam2 Links NCBI RGD Ensembl Show fit	HEPACAM family member 2
chr14_+_91557601 Show fit	0.03	ENSRNOT00000038733	RGD1309870 Links NCBI RGD Ensembl Show fit	hypothetical LOC289778
chrX_-_111102464 Show fit	0.02	ENSRNOT00000084176	Ripply1 Links NCBI RGD Ensembl Show fit	ripply transcriptional repressor 1
chr6_+_96007805 Show fit	0.02	ENSRNOT00000010163	Mnat1 Links NCBI RGD Ensembl Show fit	MNAT CDK-activating kinase assembly factor 1
chr13_-_98023829 Show fit	0.02	ENSRNOT00000075426	Kif28p Links NCBI RGD Ensembl Show fit	kinesin family member 28, pseudogene
chr11_+_53140599 Show fit	0.01	ENSRNOT00000083438	Bbx Links NCBI RGD Ensembl Show fit	BBX, HMG-box containing
chr10_-_56403188 Show fit	0.01	ENSRNOT00000019947	Chrnb1 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic beta 1 subunit
chr9_+_53440272 Show fit	0.01	ENSRNOT00000059159	LOC685203 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC685203
chr2_-_158156444 Show fit	0.01	ENSRNOT00000088559	Veph1 Links NCBI RGD Ensembl Show fit	ventricular zone expressed PH domain-containing 1
chr3_+_110855000 Show fit	0.01	ENSRNOT00000081613	Knl1 Links NCBI RGD Ensembl Show fit	kinetochore scaffold 1
chr2_-_30735514 Show fit	0.01	ENSRNOT00000025026	Cdk7 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 7
chr15_+_28439317 Show fit	0.01	ENSRNOT00000060519	LOC690384 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L31
chr6_-_95934296 Show fit	0.01	ENSRNOT00000034338	Six1 Links NCBI RGD Ensembl Show fit	SIX homeobox 1
chrX_-_83864150 Show fit	0.01	ENSRNOT00000073734	Obp1f Links NCBI RGD Ensembl Show fit	odorant binding protein I f
chr4_+_1841955 Show fit	0.01	ENSRNOT00000019271	Olr1096 Links NCBI RGD Ensembl Show fit	olfactory receptor 1096
chr17_-_27451832 Show fit	0.01	ENSRNOT00000084417	Riok1 Links NCBI RGD Ensembl Show fit	RIO kinase 1
chr17_+_4846789 Show fit	0.01	ENSRNOT00000073271	Gas1 Links NCBI RGD Ensembl Show fit	growth arrest-specific 1
chr2_-_218658761 Show fit	0.01	ENSRNOT00000018318	S1pr1 Links NCBI RGD Ensembl Show fit	sphingosine-1-phosphate receptor 1
chr1_-_1889236 Show fit	0.01	ENSRNOT00000087944	AABR07000159.2 Links NCBI RGD Ensembl Show fit
chrX_-_45284341 Show fit	0.01	ENSRNOT00000045436	Obp1f Links NCBI RGD Ensembl Show fit	odorant binding protein I f
chr17_-_43614844 Show fit	0.01	ENSRNOT00000023054	Hist1h1a Links NCBI RGD Ensembl Show fit	histone cluster 1 H1 family member a
chr4_-_184096806 Show fit	0.01	ENSRNOT00000055433	LOC100362344 Links NCBI RGD Ensembl Show fit	mKIAA1238 protein-like
chr2_+_195651930 Show fit	0.00	ENSRNOT00000028299	Tdrkh Links NCBI RGD Ensembl Show fit	tudor and KH domain containing
chr15_+_4254499 Show fit	0.00	ENSRNOT00000061686	Anxa7 Links NCBI RGD Ensembl Show fit	annexin A7
chr10_-_87153982 Show fit	0.00	ENSRNOT00000014414	Krt222 Links NCBI RGD Ensembl Show fit	keratin 222
chr2_-_203350736 Show fit	0.00	ENSRNOT00000090115 ENSRNOT00000084516	Ttf2 Links NCBI RGD Ensembl Show fit	transcription termination factor 2
chr5_+_48303366 Show fit	0.00	ENSRNOT00000009973	Gabrr2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor rho 2 subunit
chr7_+_35773928 Show fit	0.00	ENSRNOT00000034639	Cep83 Links NCBI RGD Ensembl Show fit	centrosomal protein 83
chr13_-_32427177 Show fit	0.00	ENSRNOT00000044628	Cdh19 Links NCBI RGD Ensembl Show fit	cadherin 19
chr1_+_178039063 Show fit	0.00	ENSRNOT00000046313	Arntl Links NCBI RGD Ensembl Show fit	aryl hydrocarbon receptor nuclear translocator-like
chr9_-_88748866 Show fit	0.00	ENSRNOT00000071906	Rpl30l1 Links NCBI RGD Ensembl Show fit	ribosomal protein L30-like 1
chr13_-_91776397 Show fit	0.00	ENSRNOT00000073147	Mptx1 Links NCBI RGD Ensembl Show fit	mucosal pentraxin 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0010841	positive regulation of circadian sleep/wake cycle, wakefulness(GO:0010841)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0051431	corticotropin-releasing hormone receptor 2 binding(GO:0051431)