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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Hoxc10
Z-value: 0.18
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Transcription factors associated with Hoxc10
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
Hoxc10
|
ENSRNOG00000016149 | homeo box C10 |
Activity profile of Hoxc10 motif
Sorted Z-values of Hoxc10 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr20_-_5064469 | 0.11 |
ENSRNOT00000001120
|
Ly6g6d
|
lymphocyte antigen 6 complex, locus G6D |
| chr1_-_43638161 | 0.07 |
ENSRNOT00000024460
|
Ipcef1
|
interaction protein for cytohesin exchange factors 1 |
| chr2_+_207930796 | 0.06 |
ENSRNOT00000047827
|
Kcnd3
|
potassium voltage-gated channel subfamily D member 3 |
| chr12_-_35979193 | 0.06 |
ENSRNOT00000071104
|
Tmem132b
|
transmembrane protein 132B |
| chr9_-_52238564 | 0.06 |
ENSRNOT00000005073
|
Col5a2
|
collagen type V alpha 2 chain |
| chr5_-_153840178 | 0.06 |
ENSRNOT00000025075
|
Nipal3
|
NIPA-like domain containing 3 |
| chr19_-_34752695 | 0.05 |
ENSRNOT00000052018
|
Nr3c2
|
nuclear receptor subfamily 3, group C, member 2 |
| chr18_+_29966245 | 0.05 |
ENSRNOT00000074028
|
Pcdha4
|
protocadherin alpha 4 |
| chr10_-_40953467 | 0.04 |
ENSRNOT00000092189
|
Glra1
|
glycine receptor, alpha 1 |
| chr3_-_105663457 | 0.04 |
ENSRNOT00000067646
|
Zfp770
|
zinc finger protein 770 |
| chr14_-_20920286 | 0.04 |
ENSRNOT00000004391
|
Slc4a4
|
solute carrier family 4 member 4 |
| chr7_+_107406962 | 0.04 |
ENSRNOT00000093254
|
Phf20l1
|
PHD finger protein 20-like protein 1 |
| chr3_-_141411170 | 0.03 |
ENSRNOT00000017364
|
Nkx2-2
|
NK2 homeobox 2 |
| chr8_-_93390305 | 0.03 |
ENSRNOT00000056930
|
Ibtk
|
inhibitor of Bruton tyrosine kinase |
| chr5_+_167141875 | 0.03 |
ENSRNOT00000089314
|
Slc2a5
|
solute carrier family 2 member 5 |
| chr15_-_106678918 | 0.03 |
ENSRNOT00000034723
|
Stk24
|
serine/threonine kinase 24 |
| chr10_-_84920886 | 0.03 |
ENSRNOT00000068083
|
Sp2
|
Sp2 transcription factor |
| chr10_-_87153982 | 0.03 |
ENSRNOT00000014414
|
Krt222
|
keratin 222 |
| chr19_-_22194740 | 0.02 |
ENSRNOT00000086187
|
Phkb
|
phosphorylase kinase regulatory subunit beta |
| chr13_+_77485113 | 0.02 |
ENSRNOT00000080254
|
Tnr
|
tenascin R |
| chr1_+_8310577 | 0.02 |
ENSRNOT00000015131
|
Hivep2
|
human immunodeficiency virus type I enhancer binding protein 2 |
| chr7_-_143420027 | 0.02 |
ENSRNOT00000082863
|
Krt2
|
keratin 2 |
| chr6_-_91250138 | 0.02 |
ENSRNOT00000052408
|
LOC100911256
|
ninein-like |
| chr7_-_140437467 | 0.02 |
ENSRNOT00000087181
|
Fkbp11
|
FK506 binding protein 11 |
| chr3_-_64364101 | 0.02 |
ENSRNOT00000089065
|
Zfp385b
|
zinc finger protein 385B |
| chr10_-_65502936 | 0.02 |
ENSRNOT00000089615
|
Supt6h
|
SPT6 homolog, histone chaperone |
| chr3_-_154490851 | 0.01 |
ENSRNOT00000017213
|
Tti1
|
TELO2 interacting protein 1 |
| chr3_-_165700489 | 0.01 |
ENSRNOT00000017008
|
Zfp93
|
zinc finger protein 93 |
| chr1_-_134867001 | 0.01 |
ENSRNOT00000090149
|
Chd2
|
chromodomain helicase DNA binding protein 2 |
| chr3_+_59981959 | 0.01 |
ENSRNOT00000030460
|
Sp9
|
Sp9 transcription factor |
| chr1_+_226573105 | 0.01 |
ENSRNOT00000028074
|
Cpsf7
|
cleavage and polyadenylation specific factor 7 |
| chr9_-_43116521 | 0.01 |
ENSRNOT00000039437
|
Ankrd23
|
ankyrin repeat domain 23 |
| chr4_+_118207862 | 0.01 |
ENSRNOT00000085787
ENSRNOT00000023103 |
Tia1
|
TIA1 cytotoxic granule-associated RNA binding protein |
| chr20_-_54517709 | 0.01 |
ENSRNOT00000076234
|
Grik2
|
glutamate ionotropic receptor kainate type subunit 2 |
| chr6_-_38007162 | 0.01 |
ENSRNOT00000044583
|
AABR07063632.1
|
|
| chr3_-_157049666 | 0.00 |
ENSRNOT00000089958
|
Chd6
|
chromodomain helicase DNA binding protein 6 |
| chr5_-_174921 | 0.00 |
ENSRNOT00000056239
|
Tipinl1
|
TIMELESS interacting protein like 1 |
| chr8_-_60570058 | 0.00 |
ENSRNOT00000009169
|
Scaper
|
S-phase cyclin A-associated protein in the ER |
| chr1_+_260798239 | 0.00 |
ENSRNOT00000036791
|
Lcor
|
ligand dependent nuclear receptor corepressor |
| chr11_+_80255790 | 0.00 |
ENSRNOT00000002522
|
Bcl6
|
B-cell CLL/lymphoma 6 |
| chr2_-_178521038 | 0.00 |
ENSRNOT00000033107
|
Rxfp1
|
relaxin/insulin-like family peptide receptor 1 |
| chr8_+_23398030 | 0.00 |
ENSRNOT00000031893
|
RGD1561444
|
similar to RIKEN cDNA 9530077C05 |
| chr4_-_157486844 | 0.00 |
ENSRNOT00000038281
ENSRNOT00000022874 |
Cops7a
|
COP9 signalosome subunit 7A |
| chr5_+_167142182 | 0.00 |
ENSRNOT00000024054
|
Slc2a5
|
solute carrier family 2 member 5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Hoxc10
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0031959 | mineralocorticoid receptor signaling pathway(GO:0031959) |
| 0.0 | 0.1 | GO:1903225 | negative regulation of endodermal cell differentiation(GO:1903225) |
| 0.0 | 0.0 | GO:0021530 | spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0005588 | collagen type V trimer(GO:0005588) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.0 | GO:0030977 | taurine binding(GO:0030977) |
| 0.0 | 0.1 | GO:0005250 | A-type (transient outward) potassium channel activity(GO:0005250) |