GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxc6 Links NCBI RGD Ensembl	ENSRNOG00000016442	homeo box C6

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Hoxc6	rn6_v1_chr7_+_144623555_144623555	0.31	6.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_59883839 Show fit	0.33	ENSRNOT00000093579	Aspa Links NCBI RGD Ensembl Show fit	aspartoacylase
chr17_+_78793336 Show fit	0.30	ENSRNOT00000057898	Mt1 Links NCBI RGD Ensembl Show fit	metallothionein 1
chrX_+_136460215 Show fit	0.22	ENSRNOT00000093538	Arhgap36 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 36
chr9_+_25410669 Show fit	0.16	ENSRNOT00000030912 ENSRNOT00000090920	Tfap2b Links NCBI RGD Ensembl Show fit	transcription factor AP-2 beta
chr4_-_82173207 Show fit	0.10	ENSRNOT00000074167	Hoxa5 Links NCBI RGD Ensembl Show fit	homeo box A5
chr2_-_96032722 Show fit	0.08	ENSRNOT00000015746	LOC100360846 Links NCBI RGD Ensembl Show fit	proteasome subunit beta type 6-like
chr1_+_101541266 Show fit	0.06	ENSRNOT00000028436	Hsd17b14 Links NCBI RGD Ensembl Show fit	hydroxysteroid (17-beta) dehydrogenase 14
chr12_-_47919400 Show fit	0.06	ENSRNOT00000073774	Mvk Links NCBI RGD Ensembl Show fit	mevalonate kinase
chr7_+_79638046 Show fit	0.05	ENSRNOT00000029419	Zfpm2 Links NCBI RGD Ensembl Show fit	zinc finger protein, multitype 2
chr7_+_38742051 Show fit	0.05	ENSRNOT00000006070	Dcn Links NCBI RGD Ensembl Show fit	decorin
chr12_+_40895515 Show fit	0.05	ENSRNOT00000046323	Ptpn11 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 11
chr5_+_147257678 Show fit	0.04	ENSRNOT00000066268	Rnf19b Links NCBI RGD Ensembl Show fit	ring finger protein 19B
chr7_+_34402738 Show fit	0.03	ENSRNOT00000030985	Ccdc38 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 38
chr3_+_56766475 Show fit	0.03	ENSRNOT00000078819	Sp5 Links NCBI RGD Ensembl Show fit	Sp5 transcription factor
chr13_+_89385859 Show fit	0.03	ENSRNOT00000047434	Fcgr3a Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor IIIa
chr7_-_145062956 Show fit	0.03	ENSRNOT00000055274	RGD1563200 Links NCBI RGD Ensembl Show fit	similar to CDNA sequence BC048502
chr14_+_9555264 Show fit	0.03	ENSRNOT00000002928	Nkx6-1 Links NCBI RGD Ensembl Show fit	NK6 homeobox 1
chr17_+_6667564 Show fit	0.03	ENSRNOT00000025916	Hnrnpk Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein K
chr14_+_91557601 Show fit	0.03	ENSRNOT00000038733	RGD1309870 Links NCBI RGD Ensembl Show fit	hypothetical LOC289778
chr10_-_44147035 Show fit	0.02	ENSRNOT00000041113	Olr1424 Links NCBI RGD Ensembl Show fit	olfactory receptor 1424
chr11_-_70211701 Show fit	0.02	ENSRNOT00000076114	Muc13 Links NCBI RGD Ensembl Show fit	mucin 13, cell surface associated
chr3_-_46601409 Show fit	0.02	ENSRNOT00000079261	Pla2r1 Links NCBI RGD Ensembl Show fit	phospholipase A2 receptor 1
chr1_+_224933529 Show fit	0.02	ENSRNOT00000088282	Wdr74 Links NCBI RGD Ensembl Show fit	WD repeat domain 74
chr1_+_128606770 Show fit	0.02	ENSRNOT00000073355	Ttc23 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 23
chr8_-_87245951 Show fit	0.02	ENSRNOT00000015299	Tmem30a Links NCBI RGD Ensembl Show fit	transmembrane protein 30A
chr8_+_116307141 Show fit	0.02	ENSRNOT00000037375	Rassf1 Links NCBI RGD Ensembl Show fit	Ras association domain family member 1
chr13_+_89386023 Show fit	0.02	ENSRNOT00000086223	Fcgr3a Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor IIIa
chr16_-_7412150 Show fit	0.02	ENSRNOT00000047252	RGD1564325 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S24
chr1_+_167944448 Show fit	0.02	ENSRNOT00000087667	Olr56 Links NCBI RGD Ensembl Show fit	olfactory receptor 56
chr6_+_50954631 Show fit	0.02	ENSRNOT00000078953	Cog5 Links NCBI RGD Ensembl Show fit	component of oligomeric golgi complex 5
chr3_-_113342675 Show fit	0.01	ENSRNOT00000020130	Strc Links NCBI RGD Ensembl Show fit	stereocilin
chr2_+_52431601 Show fit	0.01	ENSRNOT00000023554	Hmgcs1 Links NCBI RGD Ensembl Show fit	3-hydroxy-3-methylglutaryl-CoA synthase 1
chr13_-_113872097 Show fit	0.01	ENSRNOT00000010799 ENSRNOT00000084320	Cr1l Links NCBI RGD Ensembl Show fit	complement C3b/C4b receptor 1 like
chrX_-_83151511 Show fit	0.01	ENSRNOT00000057378	Hdx Links NCBI RGD Ensembl Show fit	highly divergent homeobox
chr9_-_30251388 Show fit	0.01	ENSRNOT00000035033	Sdhaf4 Links NCBI RGD Ensembl Show fit	succinate dehydrogenase complex assembly factor 4
chr19_-_62150423 Show fit	0.01	ENSRNOT00000073524 ENSRNOT00000091209	Ccdc7 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 7
chr5_-_79008363 Show fit	0.01	ENSRNOT00000010040	Kif12 Links NCBI RGD Ensembl Show fit	kinesin family member 12
chr2_-_23909016 Show fit	0.01	ENSRNOT00000084044	Scamp1 Links NCBI RGD Ensembl Show fit	secretory carrier membrane protein 1
chr9_-_4685383 Show fit	0.01	ENSRNOT00000061896	Sult1c2 Links NCBI RGD Ensembl Show fit	sulfotransferase family 1C member 2
chr14_-_85484275 Show fit	0.01	ENSRNOT00000083770	Kremen1 Links NCBI RGD Ensembl Show fit	kringle containing transmembrane protein 1
chr4_-_176381477 Show fit	0.00	ENSRNOT00000048367	Slco1a6 Links NCBI RGD Ensembl Show fit	solute carrier organic anion transporter family, member 1a6
chr2_-_205426869 Show fit	0.00	ENSRNOT00000023333	Sycp1 Links NCBI RGD Ensembl Show fit	synaptonemal complex protein 1
chr2_-_61414038 Show fit	0.00	ENSRNOT00000051910 ENSRNOT00000088202	Tars Links NCBI RGD Ensembl Show fit	threonyl-tRNA synthetase
chr14_+_37116492 Show fit	0.00	ENSRNOT00000002921	Sgcb Links NCBI RGD Ensembl Show fit	sarcoglycan, beta
chr2_-_140334912 Show fit	0.00	ENSRNOT00000015067	Elf2 Links NCBI RGD Ensembl Show fit	E74-like factor 2
chr5_+_10178302 Show fit	0.00	ENSRNOT00000009679	Sntg1 Links NCBI RGD Ensembl Show fit	syntrophin, gamma 1
chr1_+_227240383 Show fit	0.00	ENSRNOT00000074127	Ms4a6e Links NCBI RGD Ensembl Show fit	membrane spanning 4-domains A6E
chr7_-_55604403 Show fit	0.00	ENSRNOT00000088732	Atxn7l3b Links NCBI RGD Ensembl Show fit	ataxin 7-like 3B
chr20_-_31402483 Show fit	0.00	ENSRNOT00000033529	H2afy2 Links NCBI RGD Ensembl Show fit	H2A histone family, member Y2
chr10_+_38661901 Show fit	0.00	ENSRNOT00000009098	Zcchc10 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 10

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0046687	response to chromate(GO:0046687)
0.0	0.1	GO:0060764	cell-cell signaling involved in mammary gland development(GO:0060764)
0.0	0.2	GO:0097070	ductus arteriosus closure(GO:0097070)
0.0	0.1	GO:0019287	isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0	0.3	GO:0022010	central nervous system myelination(GO:0022010) axon ensheathment in central nervous system(GO:0032291)
0.0	0.1	GO:2000195	negative regulation of female gonad development(GO:2000195)
0.0	0.0	GO:0033277	abortive mitotic cell cycle(GO:0033277)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0019807	aspartoacylase activity(GO:0019807)
0.0	0.1	GO:0047045	testosterone 17-beta-dehydrogenase (NADP+) activity(GO:0047045)
0.0	0.0	GO:0019767	IgE receptor activity(GO:0019767)