GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxd12 Links NCBI RGD Ensembl	ENSRNOG00000001587	homeo box D12

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr6_+_146784915 Show fit	0.12	ENSRNOT00000008362	Sp8 Links NCBI RGD Ensembl Show fit	Sp8 transcription factor
chr3_+_59981959 Show fit	0.11	ENSRNOT00000030460	Sp9 Links NCBI RGD Ensembl Show fit	Sp9 transcription factor
chr2_-_173087648 Show fit	0.07	ENSRNOT00000091079	Iqcj Links NCBI RGD Ensembl Show fit	IQ motif containing J
chr10_+_77537340 Show fit	0.07	ENSRNOT00000003297	Tmem100 Links NCBI RGD Ensembl Show fit	transmembrane protein 100
chr2_-_31753528 Show fit	0.06	ENSRNOT00000075057	Pik3r1 Links NCBI RGD Ensembl Show fit	phosphoinositide-3-kinase regulatory subunit 1
chr1_+_282134981 Show fit	0.06	ENSRNOT00000036203	Nanos1 Links NCBI RGD Ensembl Show fit	nanos C2HC-type zinc finger 1
chr9_-_52238564 Show fit	0.05	ENSRNOT00000005073	Col5a2 Links NCBI RGD Ensembl Show fit	collagen type V alpha 2 chain
chr19_-_19315357 Show fit	0.05	ENSRNOT00000018888	Cyld Links NCBI RGD Ensembl Show fit	CYLD lysine 63 deubiquitinase
chr13_+_57243877 Show fit	0.05	ENSRNOT00000083693	Kcnt2 Links NCBI RGD Ensembl Show fit	potassium sodium-activated channel subfamily T member 2
chr7_+_28654733 Show fit	0.04	ENSRNOT00000006174	Pmch Links NCBI RGD Ensembl Show fit	pro-melanin-concentrating hormone
chr9_+_19451630 Show fit	0.04	ENSRNOT00000065048	Enpp4 Links NCBI RGD Ensembl Show fit	ectonucleotide pyrophosphatase/phosphodiesterase 4
chr15_-_43542939 Show fit	0.04	ENSRNOT00000012996	Dpysl2 Links NCBI RGD Ensembl Show fit	dihydropyrimidinase-like 2
chr13_+_90533365 Show fit	0.04	ENSRNOT00000082469	Dcaf8 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 8
chr14_+_12218553 Show fit	0.03	ENSRNOT00000003237	Prkg2 Links NCBI RGD Ensembl Show fit	protein kinase, cGMP-dependent, type II
chr2_+_8732932 Show fit	0.03	ENSRNOT00000072849	Arrdc3 Links NCBI RGD Ensembl Show fit	arrestin domain containing 3
chr6_+_83421882 Show fit	0.03	ENSRNOT00000084258	Lrfn5 Links NCBI RGD Ensembl Show fit	leucine rich repeat and fibronectin type III domain containing 5
chr13_+_44615553 Show fit	0.03	ENSRNOT00000082439 ENSRNOT00000005289	Rab3gap1 Links NCBI RGD Ensembl Show fit	RAB3 GTPase activating protein catalytic subunit 1
chr18_+_30880020 Show fit	0.03	ENSRNOT00000060468	Pcdhgb5 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily B, 5
chr19_-_22194740 Show fit	0.03	ENSRNOT00000086187	Phkb Links NCBI RGD Ensembl Show fit	phosphorylase kinase regulatory subunit beta
chr8_-_84632817 Show fit	0.02	ENSRNOT00000076942	Mlip Links NCBI RGD Ensembl Show fit	muscular LMNA-interacting protein
chr3_+_14889510 Show fit	0.02	ENSRNOT00000080760	Dab2ip Links NCBI RGD Ensembl Show fit	DAB2 interacting protein
chr20_+_5049496 Show fit	0.02	ENSRNOT00000088251 ENSRNOT00000001118	Ddah2 Links NCBI RGD Ensembl Show fit	dimethylarginine dimethylaminohydrolase 2
chr9_+_73529612 Show fit	0.02	ENSRNOT00000032430	Unc80 Links NCBI RGD Ensembl Show fit	unc-80 homolog, NALCN activator
chr1_-_222242644 Show fit	0.02	ENSRNOT00000050891	Vegfb Links NCBI RGD Ensembl Show fit	vascular endothelial growth factor B
chrX_-_136150209 Show fit	0.02	ENSRNOT00000048498	Enox2 Links NCBI RGD Ensembl Show fit	ecto-NOX disulfide-thiol exchanger 2
chr9_+_118586179 Show fit	0.02	ENSRNOT00000022351	Dlgap1 Links NCBI RGD Ensembl Show fit	DLG associated protein 1
chr10_-_37311625 Show fit	0.02	ENSRNOT00000043343	Jade2 Links NCBI RGD Ensembl Show fit	jade family PHD finger 2
chr3_+_151126591 Show fit	0.02	ENSRNOT00000025859	Myh7b Links NCBI RGD Ensembl Show fit	myosin heavy chain 7B
chr9_-_30844199 Show fit	0.02	ENSRNOT00000017169	Col19a1 Links NCBI RGD Ensembl Show fit	collagen type XIX alpha 1 chain
chr1_-_163554839 Show fit	0.02	ENSRNOT00000081509	Emsy Links NCBI RGD Ensembl Show fit	EMSY BRCA2-interacting transcriptional repressor
chr8_+_103938520 Show fit	0.02	ENSRNOT00000067835	Gk5 Links NCBI RGD Ensembl Show fit	glycerol kinase 5 (putative)
chr4_-_179512471 Show fit	0.02	ENSRNOT00000012588	Kras Links NCBI RGD Ensembl Show fit	KRAS proto-oncogene, GTPase
chr8_-_22086095 Show fit	0.02	ENSRNOT00000068598	Zglp1 Links NCBI RGD Ensembl Show fit	zinc finger, GATA-like protein 1
chr14_-_16903242 Show fit	0.02	ENSRNOT00000003001	Shroom3 Links NCBI RGD Ensembl Show fit	shroom family member 3
chr3_-_67787990 Show fit	0.02	ENSRNOT00000064851	Nckap1 Links NCBI RGD Ensembl Show fit	NCK-associated protein 1
chr8_-_133128290 Show fit	0.02	ENSRNOT00000008783	Ccr1l1 Links NCBI RGD Ensembl Show fit	chemokine (C-C motif) receptor 1-like 1
chr2_+_52431601 Show fit	0.02	ENSRNOT00000023554	Hmgcs1 Links NCBI RGD Ensembl Show fit	3-hydroxy-3-methylglutaryl-CoA synthase 1
chr15_-_48284548 Show fit	0.01	ENSRNOT00000038336	Hmbox1 Links NCBI RGD Ensembl Show fit	homeobox containing 1
chr7_-_59547174 Show fit	0.01	ENSRNOT00000085836	Cnot2 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex, subunit 2
chr2_+_185846232 Show fit	0.01	ENSRNOT00000023418	Lrba Links NCBI RGD Ensembl Show fit	LPS responsive beige-like anchor protein
chr13_-_107886476 Show fit	0.01	ENSRNOT00000077282	Kcnk2 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 2
chr3_-_90751055 Show fit	0.01	ENSRNOT00000040741	LOC499843 Links NCBI RGD Ensembl Show fit	LRRGT00091
chr5_-_50221095 Show fit	0.01	ENSRNOT00000012164	RGD1563056 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein
chr7_-_134722215 Show fit	0.01	ENSRNOT00000036750	Prickle1 Links NCBI RGD Ensembl Show fit	prickle planar cell polarity protein 1
chr7_+_140829076 Show fit	0.01	ENSRNOT00000086179	Spats2 Links NCBI RGD Ensembl Show fit	spermatogenesis associated, serine-rich 2
chr10_+_70262361 Show fit	0.01	ENSRNOT00000064625 ENSRNOT00000076973	Unc45b Links NCBI RGD Ensembl Show fit	unc-45 myosin chaperone B
chr2_+_226563050 Show fit	0.01	ENSRNOT00000065111	Bcar3 Links NCBI RGD Ensembl Show fit	breast cancer anti-estrogen resistance 3
chr15_-_55209342 Show fit	0.01	ENSRNOT00000021752	Rb1 Links NCBI RGD Ensembl Show fit	RB transcriptional corepressor 1
chr3_+_48096954 Show fit	0.01	ENSRNOT00000068238 ENSRNOT00000064344 ENSRNOT00000044638	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chr5_+_4373626 Show fit	0.01	ENSRNOT00000064946	Eya1 Links NCBI RGD Ensembl Show fit	EYA transcriptional coactivator and phosphatase 1
chr8_+_106816152 Show fit	0.01	ENSRNOT00000047613	Faim Links NCBI RGD Ensembl Show fit	Fas apoptotic inhibitory molecule
chr17_+_78876111 Show fit	0.01	ENSRNOT00000057895	Rpl34-ps1 Links NCBI RGD Ensembl Show fit	ribosomal protein L34, pseudogene 1
chr2_+_184230459 Show fit	0.01	ENSRNOT00000074187	AABR07012054.1 Links NCBI RGD Ensembl Show fit
chr7_-_93280009 Show fit	0.01	ENSRNOT00000064877	Samd12 Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 12
chr5_+_64566804 Show fit	0.01	ENSRNOT00000073192	LOC103690035 Links NCBI RGD Ensembl Show fit	TGF-beta receptor type-1-like
chr8_+_107229832 Show fit	0.01	ENSRNOT00000045821	Faim Links NCBI RGD Ensembl Show fit	Fas apoptotic inhibitory molecule
chr1_+_255579474 Show fit	0.01	ENSRNOT00000024465	Btaf1 Links NCBI RGD Ensembl Show fit	B-TFIID TATA-box binding protein associated factor 1
chr18_+_14756684 Show fit	0.01	ENSRNOT00000076085 ENSRNOT00000076129	Mapre2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein, RP/EB family, member 2
chr7_+_123168811 Show fit	0.01	ENSRNOT00000007091	Csdc2 Links NCBI RGD Ensembl Show fit	cold shock domain containing C2
chr4_-_176679815 Show fit	0.01	ENSRNOT00000090122	Gys2 Links NCBI RGD Ensembl Show fit	glycogen synthase 2
chr1_+_78546012 Show fit	0.01	ENSRNOT00000058172	Gng5 Links NCBI RGD Ensembl Show fit	G protein subunit gamma 5
chr10_-_87248572 Show fit	0.01	ENSRNOT00000066637 ENSRNOT00000085677	Krt26 Links NCBI RGD Ensembl Show fit	keratin 26
chr16_+_22361998 Show fit	0.01	ENSRNOT00000016193	Slc18a1 Links NCBI RGD Ensembl Show fit	solute carrier family 18 member A1
chr8_-_6235967 Show fit	0.00	ENSRNOT00000068290	LOC654482 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC654482
chr9_+_66058047 Show fit	0.00	ENSRNOT00000071819	Cdk15 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 15
chr8_+_59507990 Show fit	0.00	ENSRNOT00000018003	Hykk Links NCBI RGD Ensembl Show fit	hydroxylysine kinase
chr5_-_154965027 Show fit	0.00	ENSRNOT00000080881 ENSRNOT00000055992	Kdm1a Links NCBI RGD Ensembl Show fit	lysine demethylase 1A
chr3_-_105663457 Show fit	0.00	ENSRNOT00000067646	Zfp770 Links NCBI RGD Ensembl Show fit	zinc finger protein 770
chr1_+_143036218 Show fit	0.00	ENSRNOT00000025797	Pde8a Links NCBI RGD Ensembl Show fit	phosphodiesterase 8A
chr5_-_115387377 Show fit	0.00	ENSRNOT00000036030 ENSRNOT00000077492	RGD1560146 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein MGC34837
chr1_-_93949187 Show fit	0.00	ENSRNOT00000018956	Zfp536 Links NCBI RGD Ensembl Show fit	zinc finger protein 536
chr13_+_77485113 Show fit	0.00	ENSRNOT00000080254	Tnr Links NCBI RGD Ensembl Show fit	tenascin R
chr2_+_188745503 Show fit	0.00	ENSRNOT00000056652	Shc1 Links NCBI RGD Ensembl Show fit	SHC adaptor protein 1
chr1_+_99616447 Show fit	0.00	ENSRNOT00000029197	Klk14 Links NCBI RGD Ensembl Show fit	kallikrein related-peptidase 14
chr14_+_104480662 Show fit	0.00	ENSRNOT00000078710	Rab1a Links NCBI RGD Ensembl Show fit	RAB1A, member RAS oncogene family

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0098749	cerebellar neuron development(GO:0098749)
0.0	0.0	GO:1990108	protein linear deubiquitination(GO:1990108)
0.0	0.1	GO:1903225	negative regulation of endodermal cell differentiation(GO:1903225)
0.0	0.1	GO:0060842	arterial endothelial cell differentiation(GO:0060842)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005943	phosphatidylinositol 3-kinase complex, class IA(GO:0005943)
0.0	0.1	GO:0005588	collagen type V trimer(GO:0005588)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0046935	1-phosphatidylinositol-3-kinase regulator activity(GO:0046935)