GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxd8 Links NCBI RGD Ensembl	ENSRNOG00000042480	homeobox D8

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr9_+_73418607 Show fit	0.12	ENSRNOT00000092547	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chrX_-_40086870 Show fit	0.11	ENSRNOT00000010027	Smpx Links NCBI RGD Ensembl Show fit	small muscle protein, X-linked
chr2_+_145174876 Show fit	0.11	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr10_+_61685645 Show fit	0.09	ENSRNOT00000003933	Mnt Links NCBI RGD Ensembl Show fit	MAX network transcriptional repressor
chr5_-_12199283 Show fit	0.08	ENSRNOT00000007769	Pcmtd1 Links NCBI RGD Ensembl Show fit	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
chr2_-_96509424 Show fit	0.08	ENSRNOT00000090866	Zc2hc1a Links NCBI RGD Ensembl Show fit	zinc finger, C2HC-type containing 1A
chr16_+_31734944 Show fit	0.07	ENSRNOT00000059673	Palld Links NCBI RGD Ensembl Show fit	palladin, cytoskeletal associated protein
chr10_+_103206014 Show fit	0.06	ENSRNOT00000004081	Ttyh2 Links NCBI RGD Ensembl Show fit	tweety family member 2
chr15_+_24078280 Show fit	0.06	ENSRNOT00000015511 ENSRNOT00000063807	Mapk1ip1l Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 1 interacting protein 1-like
chr5_-_166116516 Show fit	0.06	ENSRNOT00000079919 ENSRNOT00000080888	Kif1b Links NCBI RGD Ensembl Show fit	kinesin family member 1B
chr1_-_90149991 Show fit	0.06	ENSRNOT00000076987	RGD1308428 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931406P16
chr16_+_84465656 Show fit	0.06	ENSRNOT00000043188	LOC689713 Links NCBI RGD Ensembl Show fit	LRRGT00175
chr9_+_71915421 Show fit	0.06	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr2_-_33025271 Show fit	0.06	ENSRNOT00000074941	NEWGENE_1310139 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr10_+_764421 Show fit	0.05	ENSRNOT00000084608 ENSRNOT00000087567	Myh11 Links NCBI RGD Ensembl Show fit	myosin heavy chain 11
chr3_+_63379031 Show fit	0.05	ENSRNOT00000068199	Osbpl6 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 6
chr12_+_25435567 Show fit	0.05	ENSRNOT00000092982	Gtf2i Links NCBI RGD Ensembl Show fit	general transcription factor II I
chr1_-_164977633 Show fit	0.05	ENSRNOT00000029629	Rnf169 Links NCBI RGD Ensembl Show fit	ring finger protein 169
chr6_-_98666007 Show fit	0.05	ENSRNOT00000082695	AABR07064867.1 Links NCBI RGD Ensembl Show fit
chr11_+_65743892 Show fit	0.05	ENSRNOT00000085226	AC106292.2 Links NCBI RGD Ensembl Show fit
chr13_+_105684420 Show fit	0.05	ENSRNOT00000040543	Gpatch2 Links NCBI RGD Ensembl Show fit	G patch domain containing 2
chr15_+_39638510 Show fit	0.05	ENSRNOT00000037800	Rcbtb1 Links NCBI RGD Ensembl Show fit	RCC1 and BTB domain containing protein 1
chr7_+_42304534 Show fit	0.05	ENSRNOT00000085097	Kitlg Links NCBI RGD Ensembl Show fit	KIT ligand
chr10_-_87286387 Show fit	0.05	ENSRNOT00000044206	Krt28 Links NCBI RGD Ensembl Show fit	keratin 28
chr1_-_128287151 Show fit	0.05	ENSRNOT00000084946 ENSRNOT00000089723	Mef2a Links NCBI RGD Ensembl Show fit	myocyte enhancer factor 2a
chr4_-_66955732 Show fit	0.05	ENSRNOT00000084282	Kdm7a Links NCBI RGD Ensembl Show fit	lysine (K)-specific demethylase 7A
chr18_-_43945273 Show fit	0.05	ENSRNOT00000088900	Dtwd2 Links NCBI RGD Ensembl Show fit	DTW domain containing 2
chr2_-_200003443 Show fit	0.05	ENSRNOT00000024900 ENSRNOT00000088041	Pde4dip Links NCBI RGD Ensembl Show fit	phosphodiesterase 4D interacting protein
chr4_-_151428894 Show fit	0.05	ENSRNOT00000010556	Adipor2 Links NCBI RGD Ensembl Show fit	adiponectin receptor 2
chr14_-_82171480 Show fit	0.04	ENSRNOT00000021952	Nsd2 Links NCBI RGD Ensembl Show fit	nuclear receptor binding SET domain protein 2
chr2_-_231521052 Show fit	0.04	ENSRNOT00000089534 ENSRNOT00000080470 ENSRNOT00000084756	Ank2 Links NCBI RGD Ensembl Show fit	ankyrin 2
chr17_-_89923423 Show fit	0.04	ENSRNOT00000076964	Acbd5 Links NCBI RGD Ensembl Show fit	acyl-CoA binding domain containing 5
chr5_+_116420690 Show fit	0.04	ENSRNOT00000087089	Nfia Links NCBI RGD Ensembl Show fit	nuclear factor I/A
chr2_+_127525285 Show fit	0.04	ENSRNOT00000093247	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr19_-_22194740 Show fit	0.04	ENSRNOT00000086187	Phkb Links NCBI RGD Ensembl Show fit	phosphorylase kinase regulatory subunit beta
chr2_-_113345577 Show fit	0.04	ENSRNOT00000034096	Fndc3b Links NCBI RGD Ensembl Show fit	fibronectin type III domain containing 3B
chr1_+_248132090 Show fit	0.04	ENSRNOT00000022056	Il33 Links NCBI RGD Ensembl Show fit	interleukin 33
chr3_+_48106099 Show fit	0.04	ENSRNOT00000007218	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chr13_-_100450209 Show fit	0.04	ENSRNOT00000090712	Lbr Links NCBI RGD Ensembl Show fit	lamin B receptor
chr15_-_93765498 Show fit	0.04	ENSRNOT00000093297	Mycbp2 Links NCBI RGD Ensembl Show fit	MYC binding protein 2, E3 ubiquitin protein ligase
chr13_-_94859390 Show fit	0.04	ENSRNOT00000005467 ENSRNOT00000079763	AABR07021840.1 Links NCBI RGD Ensembl Show fit
chr17_+_54298409 Show fit	0.04	ENSRNOT00000084919	Arhgap12 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 12
chr13_+_43818010 Show fit	0.04	ENSRNOT00000005532	LOC100909664 Links NCBI RGD Ensembl Show fit	centrosomal protein of 170 kDa-like
chr9_+_52687868 Show fit	0.04	ENSRNOT00000083864	Wdr75 Links NCBI RGD Ensembl Show fit	WD repeat domain 75
chr13_-_83457888 Show fit	0.03	ENSRNOT00000076289 ENSRNOT00000004065	Sft2d2 Links NCBI RGD Ensembl Show fit	SFT2 domain containing 2
chr7_-_73883812 Show fit	0.03	ENSRNOT00000065722	Stk3 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 3
chr11_-_37253776 Show fit	0.03	ENSRNOT00000002215	Dscam Links NCBI RGD Ensembl Show fit	DS cell adhesion molecule
chr17_-_79085076 Show fit	0.03	ENSRNOT00000057851	Fam171a1 Links NCBI RGD Ensembl Show fit	family with sequence similarity 171, member A1
chr18_+_63599425 Show fit	0.03	ENSRNOT00000023145	Cep192 Links NCBI RGD Ensembl Show fit	centrosomal protein 192
chr9_+_73378057 Show fit	0.03	ENSRNOT00000043627 ENSRNOT00000045766 ENSRNOT00000092445 ENSRNOT00000037974	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr11_-_83300409 Show fit	0.03	ENSRNOT00000029255	Vps8 Links NCBI RGD Ensembl Show fit	VPS8 CORVET complex subunit
chr7_-_15073052 Show fit	0.03	ENSRNOT00000037708	Zfp799 Links NCBI RGD Ensembl Show fit	zinc finger protein 799
chr16_-_9658484 Show fit	0.03	ENSRNOT00000065216	Mapk8 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 8
chrX_+_123770337 Show fit	0.02	ENSRNOT00000092554	Nkap Links NCBI RGD Ensembl Show fit	NFKB activating protein
chr7_-_70319346 Show fit	0.02	ENSRNOT00000071543	Tsfm Links NCBI RGD Ensembl Show fit	Ts translation elongation factor, mitochondrial
chr8_+_133210473 Show fit	0.02	ENSRNOT00000082774	Ccr5 Links NCBI RGD Ensembl Show fit	chemokine (C-C motif) receptor 5
chr3_+_161121697 Show fit	0.02	ENSRNOT00000036020	Wfdc10a Links NCBI RGD Ensembl Show fit	WAP four-disulfide core domain 10A
chr5_-_100977902 Show fit	0.02	ENSRNOT00000077429	Zdhhc21 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 21
chr10_+_70136855 Show fit	0.02	ENSRNOT00000084076	Lig3 Links NCBI RGD Ensembl Show fit	DNA ligase 3
chr12_+_47590154 Show fit	0.02	ENSRNOT00000045946	Git2 Links NCBI RGD Ensembl Show fit	GIT ArfGAP 2
chr19_-_37796089 Show fit	0.02	ENSRNOT00000024891	Ranbp10 Links NCBI RGD Ensembl Show fit	RAN binding protein 10
chr18_+_47456327 Show fit	0.02	ENSRNOT00000020030	Srfbp1 Links NCBI RGD Ensembl Show fit	serum response factor binding protein 1
chr12_-_2245324 Show fit	0.02	ENSRNOT00000001332 ENSRNOT00000001333	Fcer2 Links NCBI RGD Ensembl Show fit	Fc fragment of IgE receptor II
chr3_+_113918629 Show fit	0.02	ENSRNOT00000078978 ENSRNOT00000037168	Ctdspl2 Links NCBI RGD Ensembl Show fit	CTD small phosphatase like 2
chr7_+_70987861 Show fit	0.02	ENSRNOT00000072906	Nemp1 Links NCBI RGD Ensembl Show fit	nuclear envelope integral membrane protein 1
chr8_-_21453190 Show fit	0.02	ENSRNOT00000078192	Zfp26 Links NCBI RGD Ensembl Show fit	zinc finger protein 26
chr19_-_29968424 Show fit	0.02	ENSRNOT00000024981	Inpp4b Links NCBI RGD Ensembl Show fit	inositol polyphosphate-4-phosphatase type II B
chr2_-_166682325 Show fit	0.02	ENSRNOT00000091198 ENSRNOT00000012422	Sptssb Links NCBI RGD Ensembl Show fit	serine palmitoyltransferase, small subunit B
chr9_+_10941613 Show fit	0.02	ENSRNOT00000070794	Sema6b Links NCBI RGD Ensembl Show fit	semaphorin 6B
chr10_+_67810655 Show fit	0.02	ENSRNOT00000064285	Psmd11 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 11
chr13_+_27465930 Show fit	0.02	ENSRNOT00000003314	Serpinb10 Links NCBI RGD Ensembl Show fit	serpin family B member 10
chr5_+_147185474 Show fit	0.02	ENSRNOT00000000134	Ak2 Links NCBI RGD Ensembl Show fit	adenylate kinase 2
chr17_+_36691875 Show fit	0.02	ENSRNOT00000074314	LOC688583 Links NCBI RGD Ensembl Show fit	similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a)
chrX_-_82743753 Show fit	0.01	ENSRNOT00000003512	Rps6ka6 Links NCBI RGD Ensembl Show fit	ribosomal protein S6 kinase A6
chr18_-_85980833 Show fit	0.01	ENSRNOT00000058179	Socs6 Links NCBI RGD Ensembl Show fit	suppressor of cytokine signaling 6
chr1_+_15642153 Show fit	0.01	ENSRNOT00000079845	Map7 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 7
chr1_+_273854248 Show fit	0.01	ENSRNOT00000044827 ENSRNOT00000017600 ENSRNOT00000086496	Add3 Links NCBI RGD Ensembl Show fit	adducin 3
chr3_-_37854561 Show fit	0.01	ENSRNOT00000076095	Neb Links NCBI RGD Ensembl Show fit	nebulin
chr10_+_67810810 Show fit	0.01	ENSRNOT00000079156	Psmd11 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 11
chr6_-_38007162 Show fit	0.01	ENSRNOT00000044583	AABR07063632.1 Links NCBI RGD Ensembl Show fit
chr3_-_104018861 Show fit	0.01	ENSRNOT00000008387	Chrm5 Links NCBI RGD Ensembl Show fit	cholinergic receptor, muscarinic 5
chr4_+_68635581 Show fit	0.01	ENSRNOT00000016217	Ssbp1 Links NCBI RGD Ensembl Show fit	single stranded DNA binding protein 1
chr5_-_56567320 Show fit	0.01	ENSRNOT00000066081	Topors Links NCBI RGD Ensembl Show fit	TOP1 binding arginine/serine rich protein
chr1_+_107262659 Show fit	0.01	ENSRNOT00000022499	Gas2 Links NCBI RGD Ensembl Show fit	growth arrest-specific 2
chr13_+_96303703 Show fit	0.01	ENSRNOT00000084718 ENSRNOT00000029723	Efcab2 Links NCBI RGD Ensembl Show fit	EF-hand calcium binding domain 2
chr16_+_70081035 Show fit	0.01	ENSRNOT00000016098	LOC100912059 Links NCBI RGD Ensembl Show fit	ubiquitin carboxyl-terminal hydrolase 12-like
chr2_+_220432037 Show fit	0.01	ENSRNOT00000021988	Frrs1 Links NCBI RGD Ensembl Show fit	ferric-chelate reductase 1
chr9_-_11108741 Show fit	0.01	ENSRNOT00000072357	Ccdc94 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 94
chr4_+_65112944 Show fit	0.01	ENSRNOT00000083672	Akr1d1 Links NCBI RGD Ensembl Show fit	aldo-keto reductase family 1, member D1
chr8_-_126390801 Show fit	0.01	ENSRNOT00000089732	AABR07071661.1 Links NCBI RGD Ensembl Show fit
chr12_+_38377034 Show fit	0.01	ENSRNOT00000088002	Clip1 Links NCBI RGD Ensembl Show fit	CAP-GLY domain containing linker protein 1
chr12_-_46493203 Show fit	0.01	ENSRNOT00000057036	Cit Links NCBI RGD Ensembl Show fit	citron rho-interacting serine/threonine kinase
chr1_+_88955440 Show fit	0.01	ENSRNOT00000091101	Prodh2 Links NCBI RGD Ensembl Show fit	proline dehydrogenase 2
chr17_-_27279260 Show fit	0.01	ENSRNOT00000018508	Snrnp48 Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein U11/U12 subunit 48
chr8_-_118436894 Show fit	0.01	ENSRNOT00000073395	LOC100911807 Links NCBI RGD Ensembl Show fit	ATR-interacting protein-like
chr12_-_10967326 Show fit	0.01	ENSRNOT00000042095	LOC100912059 Links NCBI RGD Ensembl Show fit	ubiquitin carboxyl-terminal hydrolase 12-like
chr14_+_6221085 Show fit	0.01	ENSRNOT00000068215	AABR07014259.1 Links NCBI RGD Ensembl Show fit
chrX_+_144994139 Show fit	0.01	ENSRNOT00000071783	LOC102546596 Links NCBI RGD Ensembl Show fit	pre-mRNA-splicing factor CWC22 homolog
chr11_-_60547201 Show fit	0.01	ENSRNOT00000093151	Btla Links NCBI RGD Ensembl Show fit	B and T lymphocyte associated
chr6_+_18880737 Show fit	0.01	ENSRNOT00000003432	Alkbh8 Links NCBI RGD Ensembl Show fit	alkB homolog 8, tRNA methyltransferase
chr1_+_213511874 Show fit	0.01	ENSRNOT00000078080 ENSRNOT00000016883	Cyp2e1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily e, polypeptide 1
chr2_+_30685840 Show fit	0.00	ENSRNOT00000031385	Ccdc125 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 125
chr3_-_45169118 Show fit	0.00	ENSRNOT00000086371	Ccdc148 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 148
chr3_-_22459257 Show fit	0.00	ENSRNOT00000091747	Dennd1a Links NCBI RGD Ensembl Show fit	DENN domain containing 1A
chr2_+_86996497 Show fit	0.00	ENSRNOT00000042058	Zfp455 Links NCBI RGD Ensembl Show fit	zinc finger protein 455
chr14_+_81858737 Show fit	0.00	ENSRNOT00000029784 ENSRNOT00000058068 ENSRNOT00000058067	Poln Links NCBI RGD Ensembl Show fit	DNA polymerase nu
chr8_+_1459526 Show fit	0.00	ENSRNOT00000034503	Kbtbd3 Links NCBI RGD Ensembl Show fit	kelch repeat and BTB domain containing 3
chr5_+_103251986 Show fit	0.00	ENSRNOT00000008757	Cntln Links NCBI RGD Ensembl Show fit	centlein
chr18_+_17043903 Show fit	0.00	ENSRNOT00000068139	Fhod3 Links NCBI RGD Ensembl Show fit	formin homology 2 domain containing 3
chrX_-_76925195 Show fit	0.00	ENSRNOT00000087977	Atrx Links NCBI RGD Ensembl Show fit	ATRX, chromatin remodeler
chr13_-_90405591 Show fit	0.00	ENSRNOT00000006849	Vangl2 Links NCBI RGD Ensembl Show fit	VANGL planar cell polarity protein 2
chrX_+_54390733 Show fit	0.00	ENSRNOT00000004977	RGD1565785 Links NCBI RGD Ensembl Show fit	similar to chromosome X open reading frame 21
chr13_-_67206688 Show fit	0.00	ENSRNOT00000003630 ENSRNOT00000090693	Pla2g4a Links NCBI RGD Ensembl Show fit	phospholipase A2 group IVA
chr19_+_6046665 Show fit	0.00	ENSRNOT00000084126	Cdh8 Links NCBI RGD Ensembl Show fit	cadherin 8
chr8_+_100260049 Show fit	0.00	ENSRNOT00000011090	AABR07071101.1 Links NCBI RGD Ensembl Show fit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0055005	ventricular cardiac myofibril assembly(GO:0055005)
0.0	0.1	GO:0019520	aldonic acid metabolic process(GO:0019520) D-gluconate metabolic process(GO:0019521)
0.0	0.0	GO:0070666	negative regulation of mast cell apoptotic process(GO:0033026) mast cell proliferation(GO:0070662) regulation of mast cell proliferation(GO:0070666) positive regulation of mast cell proliferation(GO:0070668)
0.0	0.0	GO:0036309	protein localization to M-band(GO:0036309) protein localization to T-tubule(GO:0036371)
0.0	0.0	GO:0030242	pexophagy(GO:0030242)
0.0	0.0	GO:0060060	post-embryonic retina morphogenesis in camera-type eye(GO:0060060)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005927	muscle tendon junction(GO:0005927)
0.0	0.2	GO:0097442	CA3 pyramidal cell dendrite(GO:0097442)
0.0	0.1	GO:0030485	smooth muscle contractile fiber(GO:0030485)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity(GO:0004719)
0.0	0.0	GO:0071558	histone demethylase activity (H3-K27 specific)(GO:0071558)
0.0	0.0	GO:0055100	adiponectin binding(GO:0055100)
0.0	0.1	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity(GO:0004616)