GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Ikzf2 Links NCBI RGD Ensembl	ENSRNOG00000027430	IKAROS family zinc finger 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Ikzf2	rn6_v1_chr9_-_76768770_76768806	-0.40	5.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr9_-_15274917 Show fit	0.25	ENSRNOT00000019650	Pgc Links NCBI RGD Ensembl Show fit	progastricsin
chr2_-_208225888 Show fit	0.14	ENSRNOT00000054860	AABR07012775.1 Links NCBI RGD Ensembl Show fit
chr9_+_40975836 Show fit	0.14	ENSRNOT00000084470	Ptpn18 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 18
chr15_-_33250546 Show fit	0.12	ENSRNOT00000017857	RGD1565222 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931414P19
chr1_+_141767940 Show fit	0.12	ENSRNOT00000064034	Zfp710 Links NCBI RGD Ensembl Show fit	zinc finger protein 710
chr12_-_51965779 Show fit	0.11	ENSRNOT00000056733	LOC100362927 Links NCBI RGD Ensembl Show fit	replication protein A3-like
chr9_+_73433252 Show fit	0.11	ENSRNOT00000092540	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr1_-_131454689 Show fit	0.11	ENSRNOT00000014152	Nr2f2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group F, member 2
chr5_+_58393233 Show fit	0.10	ENSRNOT00000000142	Dnajb5 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member B5
chr4_-_117296082 Show fit	0.10	ENSRNOT00000021097	Egr4 Links NCBI RGD Ensembl Show fit	early growth response 4
chr14_-_112946204 Show fit	0.10	ENSRNOT00000056813	LOC103690141 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 85A-like
chr7_-_104541392 Show fit	0.10	ENSRNOT00000078116	Fam49b Links NCBI RGD Ensembl Show fit	family with sequence similarity 49, member B
chr3_+_149790856 Show fit	0.09	ENSRNOT00000075275	LOC100911637 Links NCBI RGD Ensembl Show fit	high mobility group protein B1-like
chr2_+_58448917 Show fit	0.08	ENSRNOT00000082562	Ranbp3l Links NCBI RGD Ensembl Show fit	RAN binding protein 3-like
chr14_+_8080565 Show fit	0.08	ENSRNOT00000092395	Mapk10 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase 10
chr10_-_38985466 Show fit	0.08	ENSRNOT00000010121	Il13 Links NCBI RGD Ensembl Show fit	interleukin 13
chr13_+_98311827 Show fit	0.07	ENSRNOT00000082844	Cdc42bpa Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase alpha
chr10_-_65066612 Show fit	0.07	ENSRNOT00000043448	Myo18a Links NCBI RGD Ensembl Show fit	myosin XVIIIa
chr10_-_74769637 Show fit	0.07	ENSRNOT00000008889	LOC102555183 Links NCBI RGD Ensembl Show fit	zinc finger protein OZF-like
chr13_-_80745347 Show fit	0.07	ENSRNOT00000041908	Fmo1 Links NCBI RGD Ensembl Show fit	flavin containing monooxygenase 1
chr12_+_25450286 Show fit	0.06	ENSRNOT00000092956	Gtf2i Links NCBI RGD Ensembl Show fit	general transcription factor II I
chr6_+_99356509 Show fit	0.06	ENSRNOT00000008416	Akap5 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 5
chr9_+_52023295 Show fit	0.06	ENSRNOT00000004956	Col3a1 Links NCBI RGD Ensembl Show fit	collagen type III alpha 1 chain
chr2_+_236233239 Show fit	0.06	ENSRNOT00000013694	Lef1 Links NCBI RGD Ensembl Show fit	lymphoid enhancer binding factor 1
chr9_-_116222374 Show fit	0.06	ENSRNOT00000090111 ENSRNOT00000067900	Arhgap28 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 28
chr11_+_84745904 Show fit	0.06	ENSRNOT00000002617	Klhl6 Links NCBI RGD Ensembl Show fit	kelch-like family member 6
chr7_-_120770435 Show fit	0.06	ENSRNOT00000077000	Ddx17 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 17
chr7_-_51515373 Show fit	0.06	ENSRNOT00000080285	Ppp1r12a Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 12A
chrX_-_31851715 Show fit	0.06	ENSRNOT00000068601	Vegfd Links NCBI RGD Ensembl Show fit	vascular endothelial growth factor D
chr10_-_16046033 Show fit	0.06	ENSRNOT00000089460	Cpeb4 Links NCBI RGD Ensembl Show fit	cytoplasmic polyadenylation element binding protein 4
chr2_-_80667481 Show fit	0.05	ENSRNOT00000016784	Trio Links NCBI RGD Ensembl Show fit	trio Rho guanine nucleotide exchange factor
chr6_-_42630983 Show fit	0.05	ENSRNOT00000071977	Atp6v1c2 Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V1 subunit C2
chr8_-_49158971 Show fit	0.05	ENSRNOT00000020573	Kmt2a Links NCBI RGD Ensembl Show fit	lysine methyltransferase 2A
chr7_-_51515131 Show fit	0.05	ENSRNOT00000006773 ENSRNOT00000041473 ENSRNOT00000050037	Ppp1r12a Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 12A
chr17_+_8135251 Show fit	0.05	ENSRNOT00000016982	Trpc7 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily C, member 7
chr6_-_131914028 Show fit	0.05	ENSRNOT00000007602	Bcl11b Links NCBI RGD Ensembl Show fit	B-cell CLL/lymphoma 11B
chr13_+_57243877 Show fit	0.05	ENSRNOT00000083693	Kcnt2 Links NCBI RGD Ensembl Show fit	potassium sodium-activated channel subfamily T member 2
chr4_-_183293999 Show fit	0.05	ENSRNOT00000079695	Ipo8 Links NCBI RGD Ensembl Show fit	importin 8
chr4_-_62663200 Show fit	0.05	ENSRNOT00000040969	Cnot4 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex, subunit 4
chr4_-_29778039 Show fit	0.04	ENSRNOT00000074177	Sgce Links NCBI RGD Ensembl Show fit	sarcoglycan, epsilon
chrX_+_78042859 Show fit	0.04	ENSRNOT00000003286	Lpar4 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 4
chr20_-_4542947 Show fit	0.04	ENSRNOT00000086140	Cfb Links NCBI RGD Ensembl Show fit	complement factor B
chr3_-_64024205 Show fit	0.04	ENSRNOT00000037015	Ccdc141 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 141
chr13_+_90244681 Show fit	0.04	ENSRNOT00000078162	Cd84 Links NCBI RGD Ensembl Show fit	CD84 molecule
chr13_+_110398800 Show fit	0.04	ENSRNOT00000064492	Lpgat1 Links NCBI RGD Ensembl Show fit	lysophosphatidylglycerol acyltransferase 1
chr3_-_59688692 Show fit	0.04	ENSRNOT00000078752	Sp3 Links NCBI RGD Ensembl Show fit	Sp3 transcription factor
chr15_+_34493138 Show fit	0.04	ENSRNOT00000089584 ENSRNOT00000027789	Nfatc4 Links NCBI RGD Ensembl Show fit	nuclear factor of activated T-cells 4
chr13_+_46169963 Show fit	0.04	ENSRNOT00000005212	Thsd7b Links NCBI RGD Ensembl Show fit	thrombospondin type 1 domain containing 7B
chr1_-_260254600 Show fit	0.04	ENSRNOT00000019014	Blnk Links NCBI RGD Ensembl Show fit	B-cell linker
chr10_-_21265026 Show fit	0.04	ENSRNOT00000011922	Tenm2 Links NCBI RGD Ensembl Show fit	teneurin transmembrane protein 2
chr2_-_198120041 Show fit	0.04	ENSRNOT00000079621 ENSRNOT00000028747	Plekho1 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing O1
chr4_-_34194764 Show fit	0.03	ENSRNOT00000045270	Col28a1 Links NCBI RGD Ensembl Show fit	collagen type XXVIII alpha 1 chain
chr6_-_86713370 Show fit	0.03	ENSRNOT00000005821	Klhl28 Links NCBI RGD Ensembl Show fit	kelch-like family member 28
chr9_+_71915421 Show fit	0.03	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr6_+_86713604 Show fit	0.03	ENSRNOT00000059271	Fam179b Links NCBI RGD Ensembl Show fit	family with sequence similarity 179, member B
chr4_+_180291389 Show fit	0.03	ENSRNOT00000002465	Sspn Links NCBI RGD Ensembl Show fit	sarcospan
chr1_+_266255797 Show fit	0.03	ENSRNOT00000027047	Trim8 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 8
chr6_-_76552559 Show fit	0.03	ENSRNOT00000065230	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr6_+_122751016 Show fit	0.03	ENSRNOT00000078050	Zc3h14 Links NCBI RGD Ensembl Show fit	zinc finger CCCH type containing 14
chr17_+_56109549 Show fit	0.03	ENSRNOT00000022190	Map3k8 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase kinase kinase 8
chr6_+_60566196 Show fit	0.03	ENSRNOT00000006709 ENSRNOT00000075193	Dock4 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 4
chr14_-_107160334 Show fit	0.03	ENSRNOT00000012131	Ehbp1 Links NCBI RGD Ensembl Show fit	EH domain binding protein 1
chr3_+_69549673 Show fit	0.03	ENSRNOT00000043974	Zfp804a Links NCBI RGD Ensembl Show fit	zinc finger protein 804A
chr4_+_22084954 Show fit	0.03	ENSRNOT00000090968	Crot Links NCBI RGD Ensembl Show fit	carnitine O-octanoyltransferase
chr3_+_93920013 Show fit	0.03	ENSRNOT00000083527	Lmo2 Links NCBI RGD Ensembl Show fit	LIM domain only 2
chr10_-_16045835 Show fit	0.03	ENSRNOT00000064832	Cpeb4 Links NCBI RGD Ensembl Show fit	cytoplasmic polyadenylation element binding protein 4
chr10_+_17327275 Show fit	0.03	ENSRNOT00000005486	Ubtd2 Links NCBI RGD Ensembl Show fit	ubiquitin domain containing 2
chr9_+_94316717 Show fit	0.03	ENSRNOT00000077005 ENSRNOT00000092534	Eif4e2 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4E family member 2
chr14_+_8080275 Show fit	0.02	ENSRNOT00000065965 ENSRNOT00000092542	Mapk10 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase 10
chr8_+_52127632 Show fit	0.02	ENSRNOT00000079797	Cadm1 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 1
chr1_+_190671696 Show fit	0.02	ENSRNOT00000084934	AABR07005633.1 Links NCBI RGD Ensembl Show fit
chr18_+_30496318 Show fit	0.02	ENSRNOT00000027179	Pcdhb11 Links NCBI RGD Ensembl Show fit	protocadherin beta 11
chr18_+_30562178 Show fit	0.02	ENSRNOT00000040998	LOC108348771 Links NCBI RGD Ensembl Show fit	protocadherin beta-16-like
chr6_+_28235695 Show fit	0.02	ENSRNOT00000047210	Dnmt3a Links NCBI RGD Ensembl Show fit	DNA methyltransferase 3 alpha
chr6_-_26828972 Show fit	0.02	ENSRNOT00000010932	Emilin1 Links NCBI RGD Ensembl Show fit	elastin microfibril interfacer 1
chr10_-_92476109 Show fit	0.02	ENSRNOT00000089029	Kansl1 Links NCBI RGD Ensembl Show fit	KAT8 regulatory NSL complex subunit 1
chr2_-_41784929 Show fit	0.02	ENSRNOT00000086851	Rab3c Links NCBI RGD Ensembl Show fit	RAB3C, member RAS oncogene family
chr11_-_35749464 Show fit	0.02	ENSRNOT00000078818 ENSRNOT00000078425	Erg Links NCBI RGD Ensembl Show fit	ERG, ETS transcription factor
chr8_-_11887799 Show fit	0.02	ENSRNOT00000072420	Jrkl Links NCBI RGD Ensembl Show fit	JRK-like
chr1_-_259106948 Show fit	0.02	ENSRNOT00000074429	LOC100912537 Links NCBI RGD Ensembl Show fit	tectonic-3-like
chr3_+_44025300 Show fit	0.02	ENSRNOT00000006319	Galnt5 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 5
chr9_+_73334618 Show fit	0.02	ENSRNOT00000092717	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chrX_+_84064427 Show fit	0.02	ENSRNOT00000046364	Zfp711 Links NCBI RGD Ensembl Show fit	zinc finger protein 711
chr13_-_89874008 Show fit	0.02	ENSRNOT00000051368	Ptma Links NCBI RGD Ensembl Show fit	prothymosin alpha
chr16_+_24980723 Show fit	0.01	ENSRNOT00000082142	Tma16 Links NCBI RGD Ensembl Show fit	translation machinery associated 16 homolog
chr12_-_51702730 Show fit	0.01	ENSRNOT00000046920	Ttc28 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 28
chr3_+_113918629 Show fit	0.01	ENSRNOT00000078978 ENSRNOT00000037168	Ctdspl2 Links NCBI RGD Ensembl Show fit	CTD small phosphatase like 2
chrX_-_25590048 Show fit	0.01	ENSRNOT00000004873	Mid1 Links NCBI RGD Ensembl Show fit	midline 1
chr10_-_87437455 Show fit	0.01	ENSRNOT00000051080	Krt39 Links NCBI RGD Ensembl Show fit	keratin 39
chr20_+_27975549 Show fit	0.01	ENSRNOT00000092075	Lims1 Links NCBI RGD Ensembl Show fit	LIM zinc finger domain containing 1
chr18_+_30487264 Show fit	0.01	ENSRNOT00000040125	Pcdhb10 Links NCBI RGD Ensembl Show fit	protocadherin beta 10
chr11_-_14304603 Show fit	0.01	ENSRNOT00000040202 ENSRNOT00000082143	Samsn1 Links NCBI RGD Ensembl Show fit	SAM domain, SH3 domain and nuclear localization signals, 1
chr3_+_11554457 Show fit	0.01	ENSRNOT00000073087	Fam102a Links NCBI RGD Ensembl Show fit	family with sequence similarity 102, member A
chr3_+_93920447 Show fit	0.01	ENSRNOT00000012625	Lmo2 Links NCBI RGD Ensembl Show fit	LIM domain only 2
chr10_+_53740841 Show fit	0.01	ENSRNOT00000004295	Myh2 Links NCBI RGD Ensembl Show fit	myosin heavy chain 2
chr15_+_24479761 Show fit	0.01	ENSRNOT00000016449	Ktn1 Links NCBI RGD Ensembl Show fit	kinectin 1
chr8_+_118744229 Show fit	0.01	ENSRNOT00000028364	Kif9 Links NCBI RGD Ensembl Show fit	kinesin family member 9
chr9_+_66952720 Show fit	0.01	ENSRNOT00000023678	Nbeal1 Links NCBI RGD Ensembl Show fit	neurobeachin-like 1
chr5_+_28395296 Show fit	0.01	ENSRNOT00000009375	Tmem55a Links NCBI RGD Ensembl Show fit	transmembrane protein 55A
chr2_-_123851854 Show fit	0.01	ENSRNOT00000023327	Il2 Links NCBI RGD Ensembl Show fit	interleukin 2
chr3_+_8873933 Show fit	0.01	ENSRNOT00000030996	Nup188 Links NCBI RGD Ensembl Show fit	nucleoporin 188
chr10_-_56365084 Show fit	0.00	ENSRNOT00000068013	Polr2a Links NCBI RGD Ensembl Show fit	RNA polymerase II subunit A
chr5_-_77408323 Show fit	0.00	ENSRNOT00000046857 ENSRNOT00000046760	LOC259245 Links NCBI RGD Ensembl Show fit Mup4 Links NCBI RGD Ensembl Show fit	alpha-2u globulin PGCL5 major urinary protein 4
chr4_+_66091641 Show fit	0.00	ENSRNOT00000043147	AABR07060287.1 Links NCBI RGD Ensembl Show fit
chrX_-_29648359 Show fit	0.00	ENSRNOT00000086721 ENSRNOT00000006777	Gpm6b Links NCBI RGD Ensembl Show fit	glycoprotein m6b
chrX_+_78259409 Show fit	0.00	ENSRNOT00000049779	RGD1560455 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA A630033H20 gene
chr18_+_61261418 Show fit	0.00	ENSRNOT00000064250	Zfp532 Links NCBI RGD Ensembl Show fit	zinc finger protein 532

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0002803	positive regulation of antimicrobial peptide production(GO:0002225) positive regulation of antibacterial peptide production(GO:0002803)
0.0	0.1	GO:0060838	lymphatic endothelial cell fate commitment(GO:0060838) regulation of transcription involved in lymphatic endothelial cell fate commitment(GO:0060849)
0.0	0.1	GO:0035709	memory T cell activation(GO:0035709) regulation of memory T cell activation(GO:2000567) positive regulation of memory T cell activation(GO:2000568)
0.0	0.1	GO:0033861	negative regulation of NAD(P)H oxidase activity(GO:0033861)
0.0	0.1	GO:0090164	asymmetric Golgi ribbon formation(GO:0090164)
0.0	0.0	GO:0032701	negative regulation of interleukin-18 production(GO:0032701)
0.0	0.1	GO:0060414	aorta smooth muscle tissue morphogenesis(GO:0060414)
0.0	0.1	GO:0071899	trachea submucosa development(GO:0061152) trachea gland development(GO:0061153) odontoblast differentiation(GO:0071895) regulation of estrogen receptor binding(GO:0071898) negative regulation of estrogen receptor binding(GO:0071899)
0.0	0.0	GO:0043974	histone H3-K27 acetylation(GO:0043974) regulation of histone H3-K27 acetylation(GO:1901674) regulation of cellular response to drug(GO:2001038)
0.0	0.1	GO:0036394	amylase secretion(GO:0036394)
0.0	0.0	GO:2000297	negative regulation of synapse maturation(GO:2000297)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990907	beta-catenin-TCF complex(GO:1990907)
0.0	0.1	GO:0097442	CA3 pyramidal cell dendrite(GO:0097442)
0.0	0.1	GO:0000221	vacuolar proton-transporting V-type ATPase, V1 domain(GO:0000221)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0023025	MHC class Ib protein complex binding(GO:0023025) MHC class Ib protein binding, via antigen binding groove(GO:0023030)
0.0	0.1	GO:0004726	non-membrane spanning protein tyrosine phosphatase activity(GO:0004726)
0.0	0.0	GO:0035727	lysophosphatidic acid binding(GO:0035727) lysophosphatidic acid receptor activity(GO:0070915)
0.0	0.2	GO:0004190	aspartic-type endopeptidase activity(GO:0004190)
0.0	0.1	GO:0016909	JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909)