GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Irf4 Links NCBI RGD Ensembl	ENSRNOG00000061070	interferon regulatory factor 4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Irf4	rn6_v1_chr17_-_34905117_34905117	-0.55	3.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_198008893 Show fit	0.17	ENSRNOT00000025950	Il27 Links NCBI RGD Ensembl Show fit	interleukin 27
chr17_+_72429618 Show fit	0.10	ENSRNOT00000026187	Gata3 Links NCBI RGD Ensembl Show fit	GATA binding protein 3
chr15_-_108898703 Show fit	0.08	ENSRNOT00000067577	Zic5 Links NCBI RGD Ensembl Show fit	Zic family member 5
chr8_+_55050284 Show fit	0.07	ENSRNOT00000013242	Pih1d2 Links NCBI RGD Ensembl Show fit	PIH1 domain containing 2
chr10_-_105412627 Show fit	0.07	ENSRNOT00000034817	Qrich2 Links NCBI RGD Ensembl Show fit	glutamine rich 2
chr15_+_24141651 Show fit	0.07	ENSRNOT00000082304	Lgals3 Links NCBI RGD Ensembl Show fit	galectin 3
chr1_+_220948331 Show fit	0.07	ENSRNOT00000036185	Ap5b1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 5, beta 1 subunit
chr17_+_47662532 Show fit	0.05	ENSRNOT00000081314	Stard3nl Links NCBI RGD Ensembl Show fit	STARD3 N-terminal like
chr1_-_214252456 Show fit	0.05	ENSRNOT00000023504	Irf7 Links NCBI RGD Ensembl Show fit	interferon regulatory factor 7
chr9_-_64096265 Show fit	0.05	ENSRNOT00000013502	Tyw5 Links NCBI RGD Ensembl Show fit	tRNA-yW synthesizing protein 5
chr8_-_92942076 Show fit	0.05	ENSRNOT00000056937	Fam46a Links NCBI RGD Ensembl Show fit	family with sequence similarity 46, member A
chr9_+_18001105 Show fit	0.05	ENSRNOT00000071814	AABR07066826.2 Links NCBI RGD Ensembl Show fit
chr7_+_122700854 Show fit	0.04	ENSRNOT00000086603	Rbx1 Links NCBI RGD Ensembl Show fit	ring-box 1
chr2_-_96032722 Show fit	0.04	ENSRNOT00000015746	LOC100360846 Links NCBI RGD Ensembl Show fit	proteasome subunit beta type 6-like
chr2_-_185852759 Show fit	0.04	ENSRNOT00000049461	Mab21l2 Links NCBI RGD Ensembl Show fit	mab-21 like 2
chr9_+_84410972 Show fit	0.04	ENSRNOT00000019724	Mogat1 Links NCBI RGD Ensembl Show fit	monoacylglycerol O-acyltransferase 1
chr20_-_50564987 Show fit	0.04	ENSRNOT00000034485 ENSRNOT00000064466	Lin28b Links NCBI RGD Ensembl Show fit	lin-28 homolog B
chr6_-_135049728 Show fit	0.04	ENSRNOT00000009556	Hsp90aa1 Links NCBI RGD Ensembl Show fit	heat shock protein 90 alpha family class A member 1
chr8_-_55050194 Show fit	0.04	ENSRNOT00000013197	LOC100151767 Links NCBI RGD Ensembl Show fit	hypothetical LOC100151767
chr1_+_80056755 Show fit	0.04	ENSRNOT00000021221	Snrpd2 Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein D2 polypeptide
chr2_+_58724855 Show fit	0.04	ENSRNOT00000089609	Capsl Links NCBI RGD Ensembl Show fit	calcyphosine-like
chr1_+_266333440 Show fit	0.04	ENSRNOT00000071243	Sfxn2 Links NCBI RGD Ensembl Show fit	sideroflexin 2
chr1_+_196095214 Show fit	0.03	ENSRNOT00000080741	LOC691716 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S15a
chrX_+_31984612 Show fit	0.03	ENSRNOT00000005181	Bmx Links NCBI RGD Ensembl Show fit	BMX non-receptor tyrosine kinase
chr2_+_95077577 Show fit	0.03	ENSRNOT00000046368	Mrps28 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein S28
chr13_-_102643223 Show fit	0.03	ENSRNOT00000003155	Hlx Links NCBI RGD Ensembl Show fit	H2.0-like homeobox
chr8_-_53223804 Show fit	0.03	ENSRNOT00000008965	Htr3a Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 3A
chr15_+_105640097 Show fit	0.03	ENSRNOT00000014300	Mbnl2 Links NCBI RGD Ensembl Show fit	muscleblind-like splicing regulator 2
chrX_-_105308554 Show fit	0.03	ENSRNOT00000045556	Taf7l Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 7-like
chr15_+_34256071 Show fit	0.03	ENSRNOT00000025887	Psme1 Links NCBI RGD Ensembl Show fit	proteasome activator subunit 1
chrM_+_8599 Show fit	0.03	ENSRNOT00000049683	Mt-cox3 Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome C oxidase III
chr15_+_43905099 Show fit	0.03	ENSRNOT00000016568	Ebf2 Links NCBI RGD Ensembl Show fit	early B-cell factor 2
chr8_+_117307339 Show fit	0.03	ENSRNOT00000064571	Qrich1 Links NCBI RGD Ensembl Show fit	glutamine-rich 1
chr7_-_143353925 Show fit	0.03	ENSRNOT00000068533	Krt71 Links NCBI RGD Ensembl Show fit	keratin 71
chr2_-_196046311 Show fit	0.03	ENSRNOT00000028484	Psmb4 Links NCBI RGD Ensembl Show fit	proteasome subunit beta 4
chr17_-_32015071 Show fit	0.03	ENSRNOT00000070876	LOC100911107 Links NCBI RGD Ensembl Show fit	leukocyte elastase inhibitor A-like
chr10_+_74724549 Show fit	0.03	ENSRNOT00000009077	Tex14 Links NCBI RGD Ensembl Show fit	testis expressed 14, intercellular bridge forming factor
chr5_-_151898022 Show fit	0.03	ENSRNOT00000000133	Pigv Links NCBI RGD Ensembl Show fit	phosphatidylinositol glycan anchor biosynthesis, class V
chr1_-_16687817 Show fit	0.02	ENSRNOT00000091376 ENSRNOT00000081620	Myb Links NCBI RGD Ensembl Show fit	MYB proto-oncogene, transcription factor
chr16_+_2706428 Show fit	0.02	ENSRNOT00000077117	Il17rd Links NCBI RGD Ensembl Show fit	interleukin 17 receptor D
chr2_-_210991509 Show fit	0.02	ENSRNOT00000087329	Cyb561d1 Links NCBI RGD Ensembl Show fit	cytochrome b561 family, member D1
chr20_+_25990656 Show fit	0.02	ENSRNOT00000081254	Lrrtm3 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 3
chr2_-_30577218 Show fit	0.02	ENSRNOT00000024674	Ocln Links NCBI RGD Ensembl Show fit	occludin
chr13_-_79899479 Show fit	0.02	ENSRNOT00000035815	RGD1309106 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein
chr6_+_147315328 Show fit	0.02	ENSRNOT00000056654	Macc1 Links NCBI RGD Ensembl Show fit	MACC1, MET transcriptional regulator
chr14_+_113530470 Show fit	0.02	ENSRNOT00000004919	Pnpt1 Links NCBI RGD Ensembl Show fit	polyribonucleotide nucleotidyltransferase 1
chr9_+_73493027 Show fit	0.02	ENSRNOT00000074427 ENSRNOT00000089478	Unc80 Links NCBI RGD Ensembl Show fit	unc-80 homolog, NALCN activator
chr5_-_107857320 Show fit	0.02	ENSRNOT00000008898	Cdkn2b Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 2B
chr19_-_49448072 Show fit	0.02	ENSRNOT00000014997	Cmc2 Links NCBI RGD Ensembl Show fit	C-x(9)-C motif containing 2
chr1_-_142183884 Show fit	0.02	ENSRNOT00000016032	Fes Links NCBI RGD Ensembl Show fit	FES proto-oncogene, tyrosine kinase
chr13_+_48790951 Show fit	0.02	ENSRNOT00000090233	Elk4 Links NCBI RGD Ensembl Show fit	ELK4, ETS transcription factor
chr20_-_4698718 Show fit	0.02	ENSRNOT00000047527	RT1-CE7 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE7
chr20_-_27682861 Show fit	0.02	ENSRNOT00000057317	Fam26f Links NCBI RGD Ensembl Show fit	family with sequence similarity 26, member F
chr15_+_18710492 Show fit	0.02	ENSRNOT00000012532	Dnase1l3 Links NCBI RGD Ensembl Show fit	deoxyribonuclease 1-like 3
chr10_+_34277993 Show fit	0.02	ENSRNOT00000055872 ENSRNOT00000003343	Ifi47 Links NCBI RGD Ensembl Show fit	interferon gamma inducible protein 47
chr18_+_83471342 Show fit	0.02	ENSRNOT00000019384	Neto1 Links NCBI RGD Ensembl Show fit	neuropilin and tolloid like 1
chr2_-_30576591 Show fit	0.02	ENSRNOT00000084667	Ocln Links NCBI RGD Ensembl Show fit	occludin
chr18_-_56728185 Show fit	0.02	ENSRNOT00000066048	Ppargc1b Links NCBI RGD Ensembl Show fit	PPARG coactivator 1 beta
chr9_+_64095978 Show fit	0.02	ENSRNOT00000021533	Maip1 Links NCBI RGD Ensembl Show fit	matrix AAA peptidase interacting protein 1
chr5_-_126782726 Show fit	0.02	ENSRNOT00000048784	Tceanc2 Links NCBI RGD Ensembl Show fit	transcription elongation factor A N-terminal and central domain containing 2
chr3_-_52510507 Show fit	0.02	ENSRNOT00000091259	Scn1a Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel alpha subunit 1
chr7_+_91832988 Show fit	0.02	ENSRNOT00000006410	Slc30a8 Links NCBI RGD Ensembl Show fit	solute carrier family 30 member 8
chr20_-_35450513 Show fit	0.02	ENSRNOT00000087342	Man1a1 Links NCBI RGD Ensembl Show fit	mannosidase, alpha, class 1A, member 1
chr6_+_123974798 Show fit	0.01	ENSRNOT00000075794	Kcnk13 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 13
chr1_-_47213749 Show fit	0.01	ENSRNOT00000024656	Dynlt1 Links NCBI RGD Ensembl Show fit	dynein light chain Tctex-type 1
chr1_-_40921508 Show fit	0.01	ENSRNOT00000026433	Zbtb2 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 2
chr5_-_33892462 Show fit	0.01	ENSRNOT00000009334	Atp6v0d2 Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V0 subunit D2
chr4_+_112773938 Show fit	0.01	ENSRNOT00000009321	Eva1a Links NCBI RGD Ensembl Show fit	eva-1 homolog A, regulator of programmed cell death
chr2_+_165076607 Show fit	0.01	ENSRNOT00000012831	Il12a Links NCBI RGD Ensembl Show fit	interleukin 12A
chr5_-_59913348 Show fit	0.01	ENSRNOT00000018164	LOC100359916 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein K-like
chr5_-_107858104 Show fit	0.01	ENSRNOT00000092196	Cdkn2b Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 2B
chr5_+_154077944 Show fit	0.01	ENSRNOT00000031512	Il22ra1 Links NCBI RGD Ensembl Show fit	interleukin 22 receptor subunit alpha 1
chr1_+_260289589 Show fit	0.01	ENSRNOT00000051058	Dntt Links NCBI RGD Ensembl Show fit	DNA nucleotidylexotransferase
chr11_+_67757928 Show fit	0.01	ENSRNOT00000039215	Dtx3l Links NCBI RGD Ensembl Show fit	deltex E3 ubiquitin ligase 3L
chr15_-_9086282 Show fit	0.01	ENSRNOT00000008989	Thrb Links NCBI RGD Ensembl Show fit	thyroid hormone receptor beta
chr3_+_120726906 Show fit	0.01	ENSRNOT00000051069	Bcl2l11 Links NCBI RGD Ensembl Show fit	BCL2 like 11
chr1_-_201110928 Show fit	0.01	ENSRNOT00000027721	Nsmce4a Links NCBI RGD Ensembl Show fit	NSE4 homolog A, SMC5-SMC6 complex component
chr20_-_4542073 Show fit	0.01	ENSRNOT00000000477	Cfb Links NCBI RGD Ensembl Show fit	complement factor B
chr17_+_36334147 Show fit	0.01	ENSRNOT00000050261	E2f3 Links NCBI RGD Ensembl Show fit	E2F transcription factor 3
chr4_+_161685258 Show fit	0.01	ENSRNOT00000008012 ENSRNOT00000008003	Foxm1 Links NCBI RGD Ensembl Show fit	forkhead box M1
chr7_-_15364203 Show fit	0.01	ENSRNOT00000036473	RGD1310212 Links NCBI RGD Ensembl Show fit	similar to KIAA1111-like protein
chr3_-_37445907 Show fit	0.01	ENSRNOT00000006172	Rbm43 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 43
chr8_-_40122450 Show fit	0.01	ENSRNOT00000039729	Tbrg1 Links NCBI RGD Ensembl Show fit	transforming growth factor beta regulator 1
chr9_-_82514399 Show fit	0.01	ENSRNOT00000026799	Dnpep Links NCBI RGD Ensembl Show fit	aspartyl aminopeptidase
chr12_-_47482961 Show fit	0.01	ENSRNOT00000001600	Oasl2 Links NCBI RGD Ensembl Show fit	2'-5' oligoadenylate synthetase-like 2
chr1_-_266333105 Show fit	0.01	ENSRNOT00000027093	Arl3 Links NCBI RGD Ensembl Show fit	ADP ribosylation factor like GTPase 3
chr1_+_13261876 Show fit	0.00	ENSRNOT00000090703	Reps1 Links NCBI RGD Ensembl Show fit	RALBP1 associated Eps domain containing 1
chr7_-_24885775 Show fit	0.00	ENSRNOT00000010024	Tcp11l2 Links NCBI RGD Ensembl Show fit	t-complex 11 like 2
chr15_+_3996328 Show fit	0.00	ENSRNOT00000088252	Ndst2 Links NCBI RGD Ensembl Show fit	N-deacetylase and N-sulfotransferase 2
chr2_-_57196568 Show fit	0.00	ENSRNOT00000060146	Wdr70 Links NCBI RGD Ensembl Show fit	WD repeat domain 70
chr2_-_30633857 Show fit	0.00	ENSRNOT00000085488	Marveld2 Links NCBI RGD Ensembl Show fit	MARVEL domain containing 2
chr5_-_62153762 Show fit	0.00	ENSRNOT00000066001 ENSRNOT00000086962	Trim14 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 14
chrX_+_85338928 Show fit	0.00	ENSRNOT00000074811 ENSRNOT00000006907	Dach2 Links NCBI RGD Ensembl Show fit	dachshund family transcription factor 2
chr12_-_9998779 Show fit	0.00	ENSRNOT00000001265	Rpl21 Links NCBI RGD Ensembl Show fit	ribosomal protein L21
chr15_+_3996048 Show fit	0.00	ENSRNOT00000078653	Ndst2 Links NCBI RGD Ensembl Show fit	N-deacetylase and N-sulfotransferase 2
chr17_-_69827112 Show fit	0.00	ENSRNOT00000023835	Akr1c14 Links NCBI RGD Ensembl Show fit	aldo-keto reductase family 1, member C14
chr10_-_89454681 Show fit	0.00	ENSRNOT00000028109	Brca1 Links NCBI RGD Ensembl Show fit	BRCA1, DNA repair associated
chr5_-_153924896 Show fit	0.00	ENSRNOT00000065247	Grhl3 Links NCBI RGD Ensembl Show fit	grainyhead-like transcription factor 3
chr1_-_79930263 Show fit	0.00	ENSRNOT00000019219	Foxa3 Links NCBI RGD Ensembl Show fit	forkhead box A3
chr20_+_25990304 Show fit	0.00	ENSRNOT00000033980	Lrrtm3 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 3
chr10_+_76343847 Show fit	0.00	ENSRNOT00000055674	Trim25 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 25
chr13_+_82438697 Show fit	0.00	ENSRNOT00000003759	Selp Links NCBI RGD Ensembl Show fit	selectin P
chr18_-_53181503 Show fit	0.00	ENSRNOT00000066548	Fbn2 Links NCBI RGD Ensembl Show fit	fibrillin 2
chr6_+_135866739 Show fit	0.00	ENSRNOT00000013460	Exoc3l4 Links NCBI RGD Ensembl Show fit	exocyst complex component 3-like 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002572	pro-T cell differentiation(GO:0002572)
0.0	0.1	GO:1903769	negative regulation of cell proliferation in bone marrow(GO:1903769)
0.0	0.2	GO:0045625	regulation of T-helper 1 cell differentiation(GO:0045625)
0.0	0.0	GO:0006651	diacylglycerol biosynthetic process(GO:0006651)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0008537	proteasome activator complex(GO:0008537)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005134	interleukin-2 receptor binding(GO:0005134)
0.0	0.1	GO:0019863	IgE binding(GO:0019863) advanced glycation end-product receptor activity(GO:0050785)
0.0	0.0	GO:0002134	UTP binding(GO:0002134) sulfonylurea receptor binding(GO:0017098) pyrimidine ribonucleoside binding(GO:0032551)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	PID IL27 PATHWAY	IL27-mediated signaling events