GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Isl1 Links NCBI RGD Ensembl	ENSRNOG00000012556	ISL LIM homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Isl1	rn6_v1_chr2_-_48501436_48501436	-0.37	5.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_43638161 Show fit	0.11	ENSRNOT00000024460	Ipcef1 Links NCBI RGD Ensembl Show fit	interaction protein for cytohesin exchange factors 1
chr10_-_64657089 Show fit	0.09	ENSRNOT00000080703	Abr Links NCBI RGD Ensembl Show fit	active BCR-related
chrX_+_153677811 Show fit	0.08	ENSRNOT00000072808	AABR07042361.1 Links NCBI RGD Ensembl Show fit
chr19_-_58735173 Show fit	0.07	ENSRNOT00000030077	Pcnx2 Links NCBI RGD Ensembl Show fit	pecanex homolog 2 (Drosophila)
chr3_+_54253949 Show fit	0.07	ENSRNOT00000010018	B3galt1 Links NCBI RGD Ensembl Show fit	Beta-1,3-galactosyltransferase 1
chr3_+_8192575 Show fit	0.06	ENSRNOT00000060977	Rapgef1 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 1
chr20_-_12820466 Show fit	0.06	ENSRNOT00000001699	Ftcd Links NCBI RGD Ensembl Show fit	formimidoyltransferase cyclodeaminase
chr2_+_66940057 Show fit	0.06	ENSRNOT00000043050	Cdh9 Links NCBI RGD Ensembl Show fit	cadherin 9
chr15_+_62406873 Show fit	0.05	ENSRNOT00000047572	Olfm4 Links NCBI RGD Ensembl Show fit	olfactomedin 4
chr9_-_52238564 Show fit	0.05	ENSRNOT00000005073	Col5a2 Links NCBI RGD Ensembl Show fit	collagen type V alpha 2 chain
chr15_-_45927804 Show fit	0.05	ENSRNOT00000086271	Ints6 Links NCBI RGD Ensembl Show fit	integrator complex subunit 6
chr1_-_19376301 Show fit	0.05	ENSRNOT00000015547	Arhgap18 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 18
chr15_+_56666012 Show fit	0.05	ENSRNOT00000013408	Htr2a Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 2A
chr5_+_172364421 Show fit	0.04	ENSRNOT00000018769	Hes5 Links NCBI RGD Ensembl Show fit	hes family bHLH transcription factor 5
chr3_-_44177689 Show fit	0.04	ENSRNOT00000006387	Cytip Links NCBI RGD Ensembl Show fit	cytohesin 1 interacting protein
chr15_+_4209703 Show fit	0.04	ENSRNOT00000082236	Ppp3cb Links NCBI RGD Ensembl Show fit	protein phosphatase 3 catalytic subunit beta
chr3_-_25212049 Show fit	0.04	ENSRNOT00000040023	Lrp1b Links NCBI RGD Ensembl Show fit	LDL receptor related protein 1B
chr14_+_69800156 Show fit	0.04	ENSRNOT00000072746	Lcorl Links NCBI RGD Ensembl Show fit	ligand dependent nuclear receptor corepressor-like
chr3_+_33440191 Show fit	0.04	ENSRNOT00000034632 ENSRNOT00000092907	Mbd5 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 5
chr8_-_45137893 Show fit	0.04	ENSRNOT00000010743	RGD1309108 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ23554
chr18_-_28017925 Show fit	0.04	ENSRNOT00000075420	Lrrtm2 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 2
chr10_-_21265026 Show fit	0.03	ENSRNOT00000011922	Tenm2 Links NCBI RGD Ensembl Show fit	teneurin transmembrane protein 2
chr10_-_31359699 Show fit	0.03	ENSRNOT00000081280	Cyfip2 Links NCBI RGD Ensembl Show fit	cytoplasmic FMR1 interacting protein 2
chr1_-_88240057 Show fit	0.03	ENSRNOT00000073092	LOC103690038 Links NCBI RGD Ensembl Show fit	zinc finger protein 569
chr18_-_4294136 Show fit	0.03	ENSRNOT00000091909	Osbpl1a Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 1A
chr20_+_48504264 Show fit	0.03	ENSRNOT00000087740	Cdc40 Links NCBI RGD Ensembl Show fit	cell division cycle 40
chr2_-_53300404 Show fit	0.03	ENSRNOT00000088876	Ghr Links NCBI RGD Ensembl Show fit	growth hormone receptor
chr17_-_84247038 Show fit	0.03	ENSRNOT00000068553	Nebl Links NCBI RGD Ensembl Show fit	nebulette
chr6_-_80107236 Show fit	0.03	ENSRNOT00000006369	Sec23a Links NCBI RGD Ensembl Show fit	Sec23 homolog A, coat complex II component
chr1_-_126211439 Show fit	0.03	ENSRNOT00000014988	Tjp1 Links NCBI RGD Ensembl Show fit	tight junction protein 1
chr13_-_89242443 Show fit	0.02	ENSRNOT00000029202	Atf6 Links NCBI RGD Ensembl Show fit	activating transcription factor 6
chrX_-_128268285 Show fit	0.02	ENSRNOT00000009755 ENSRNOT00000081880	Thoc2 Links NCBI RGD Ensembl Show fit	THO complex 2
chr2_+_4989295 Show fit	0.02	ENSRNOT00000041541	Fam172a Links NCBI RGD Ensembl Show fit	family with sequence similarity 172, member A
chr3_-_71798531 Show fit	0.02	ENSRNOT00000088170	Calcrl Links NCBI RGD Ensembl Show fit	calcitonin receptor like receptor
chr17_+_5513930 Show fit	0.02	ENSRNOT00000091370	Agtpbp1 Links NCBI RGD Ensembl Show fit	ATP/GTP binding protein 1
chr14_-_3288017 Show fit	0.02	ENSRNOT00000080452	LOC689986 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC689986
chr5_+_113725717 Show fit	0.02	ENSRNOT00000032248	Tek Links NCBI RGD Ensembl Show fit	TEK receptor tyrosine kinase
chr2_+_34312766 Show fit	0.02	ENSRNOT00000060962	Cenpk Links NCBI RGD Ensembl Show fit	centromere protein K
chr12_+_37444072 Show fit	0.02	ENSRNOT00000077380 ENSRNOT00000092699 ENSRNOT00000001373 ENSRNOT00000092416	Eif2b1 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 2B subunit 1 alpha
chr2_+_157453428 Show fit	0.02	ENSRNOT00000051494	Lekr1 Links NCBI RGD Ensembl Show fit	leucine, glutamate and lysine rich 1
chr8_+_99894762 Show fit	0.02	ENSRNOT00000081768	Plscr4 Links NCBI RGD Ensembl Show fit	phospholipid scramblase 4
chr15_-_52320385 Show fit	0.02	ENSRNOT00000067776	Dmtn Links NCBI RGD Ensembl Show fit	dematin actin binding protein
chr20_+_9948908 Show fit	0.02	ENSRNOT00000001541	Ubash3a Links NCBI RGD Ensembl Show fit	ubiquitin associated and SH3 domain containing, A
chr13_-_102942863 Show fit	0.02	ENSRNOT00000003198	Mark1 Links NCBI RGD Ensembl Show fit	microtubule affinity regulating kinase 1
chr1_-_255815733 Show fit	0.02	ENSRNOT00000047387	Cpeb3 Links NCBI RGD Ensembl Show fit	cytoplasmic polyadenylation element binding protein 3
chr1_+_239412884 Show fit	0.01	ENSRNOT00000067384	Tmem2 Links NCBI RGD Ensembl Show fit	transmembrane protein 2
chr14_-_5033941 Show fit	0.01	ENSRNOT00000072818 ENSRNOT00000082331	Zfp326 Links NCBI RGD Ensembl Show fit	zinc finger protein 326
chr14_-_19191863 Show fit	0.01	ENSRNOT00000003921	Alb Links NCBI RGD Ensembl Show fit	albumin
chr11_-_17119582 Show fit	0.01	ENSRNOT00000087665	RGD1563888 Links NCBI RGD Ensembl Show fit	similar to DNA segment, Chr 16, ERATO Doi 472, expressed
chr2_+_83393282 Show fit	0.01	ENSRNOT00000044871	Ctnnd2 Links NCBI RGD Ensembl Show fit	catenin delta 2
chr13_+_56513286 Show fit	0.01	ENSRNOT00000015596	Zbtb41 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 41
chr6_-_117972898 Show fit	0.01	ENSRNOT00000032968	AABR07065265.1 Links NCBI RGD Ensembl Show fit
chrX_-_63182385 Show fit	0.01	ENSRNOT00000076613	Zfx Links NCBI RGD Ensembl Show fit	zinc finger protein X-linked
chr4_+_157836912 Show fit	0.01	ENSRNOT00000067271	Scnn1a Links NCBI RGD Ensembl Show fit	sodium channel epithelial 1 alpha subunit
chr7_-_134722215 Show fit	0.01	ENSRNOT00000036750	Prickle1 Links NCBI RGD Ensembl Show fit	prickle planar cell polarity protein 1
chr7_+_138707426 Show fit	0.01	ENSRNOT00000037874	Pced1b Links NCBI RGD Ensembl Show fit	PC-esterase domain containing 1B
chr2_+_188844073 Show fit	0.01	ENSRNOT00000028117	Kcnn3 Links NCBI RGD Ensembl Show fit	potassium calcium-activated channel subfamily N member 3
chr4_+_57883849 Show fit	0.01	ENSRNOT00000013880	Cpa4 Links NCBI RGD Ensembl Show fit	carboxypeptidase A4
chr8_+_57936650 Show fit	0.01	ENSRNOT00000089686	Exph5 Links NCBI RGD Ensembl Show fit	exophilin 5
chr18_-_26656879 Show fit	0.00	ENSRNOT00000086729	Epb41l4a Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4A
chr2_-_157759819 Show fit	0.00	ENSRNOT00000015763 ENSRNOT00000016016	LOC100909712 Links NCBI RGD Ensembl Show fit	cyclin-L1-like
chr15_+_12827707 Show fit	0.00	ENSRNOT00000012452	Fezf2 Links NCBI RGD Ensembl Show fit	Fez family zinc finger 2
chr15_+_28023018 Show fit	0.00	ENSRNOT00000090272	Rnase4 Links NCBI RGD Ensembl Show fit	ribonuclease A family member 4
chrX_+_23081125 Show fit	0.00	ENSRNOT00000071639	AABR07037520.1 Links NCBI RGD Ensembl Show fit
chr8_+_64489942 Show fit	0.00	ENSRNOT00000083666	Pkm Links NCBI RGD Ensembl Show fit	pyruvate kinase, muscle
chr6_-_107678156 Show fit	0.00	ENSRNOT00000014158	Elmsan1 Links NCBI RGD Ensembl Show fit	ELM2 and Myb/SANT domain containing 1
chr20_+_48503973 Show fit	0.00	ENSRNOT00000064081	Cdc40 Links NCBI RGD Ensembl Show fit	cell division cycle 40
chr5_+_18901039 Show fit	0.00	ENSRNOT00000012066	Fam110b Links NCBI RGD Ensembl Show fit	family with sequence similarity 110, member B
chr14_-_86560694 Show fit	0.00	ENSRNOT00000075827	Npc1l1 Links NCBI RGD Ensembl Show fit	NPC1 like intracellular cholesterol transporter 1
chr3_-_161819029 Show fit	0.00	ENSRNOT00000091834	LOC102555457 Links NCBI RGD Ensembl Show fit	engulfment and cell motility protein 2-like
chr4_+_158088505 Show fit	0.00	ENSRNOT00000026643	Vwf Links NCBI RGD Ensembl Show fit	von Willebrand factor
chr1_-_102826965 Show fit	0.00	ENSRNOT00000078692	Saa4 Links NCBI RGD Ensembl Show fit	serum amyloid A4
chr2_-_100372252 Show fit	0.00	ENSRNOT00000011890	Hnf4g Links NCBI RGD Ensembl Show fit	hepatocyte nuclear factor 4, gamma
chrX_+_78769419 Show fit	0.00	ENSRNOT00000003190	Tbx22 Links NCBI RGD Ensembl Show fit	T-box 22
chr4_-_7885301 Show fit	0.00	ENSRNOT00000035034	Rint1 Links NCBI RGD Ensembl Show fit	RAD50 interactor 1
chr17_-_77527894 Show fit	0.00	ENSRNOT00000032173	Bend7 Links NCBI RGD Ensembl Show fit	BEN domain containing 7

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0043314	negative regulation of neutrophil degranulation(GO:0043314)
0.0	0.1	GO:0015942	formate metabolic process(GO:0015942) histidine catabolic process to glutamate and formamide(GO:0019556) formamide metabolic process(GO:0043606)
0.0	0.0	GO:0007208	phospholipase C-activating serotonin receptor signaling pathway(GO:0007208)
0.0	0.0	GO:0042668	auditory receptor cell fate determination(GO:0042668) negative regulation of pro-B cell differentiation(GO:2000974) negative regulation of forebrain neuron differentiation(GO:2000978)
0.0	0.0	GO:0001915	negative regulation of T cell mediated cytotoxicity(GO:0001915)
0.0	0.0	GO:0060399	positive regulation of growth hormone receptor signaling pathway(GO:0060399)
0.0	0.1	GO:1903225	negative regulation of endodermal cell differentiation(GO:1903225)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005588	collagen type V trimer(GO:0005588)
0.0	0.1	GO:0030868	smooth endoplasmic reticulum membrane(GO:0030868) smooth endoplasmic reticulum part(GO:0097425)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0071886	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding(GO:0071886)
0.0	0.1	GO:0008499	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity(GO:0008499)
0.0	0.1	GO:0016841	ammonia-lyase activity(GO:0016841)