GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Lhx3 Links NCBI RGD Ensembl	ENSRNOG00000018427	LIM homeobox 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Lhx3	rn6_v1_chr3_-_3661810_3661810	0.95	1.2e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_2174131 Show fit	0.30	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr1_-_264975132 Show fit	0.12	ENSRNOT00000021748	Lbx1 Links NCBI RGD Ensembl Show fit	ladybird homeobox 1
chr2_+_145174876 Show fit	0.10	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr15_-_93765498 Show fit	0.09	ENSRNOT00000093297	Mycbp2 Links NCBI RGD Ensembl Show fit	MYC binding protein 2, E3 ubiquitin protein ligase
chrX_-_40086870 Show fit	0.08	ENSRNOT00000010027	Smpx Links NCBI RGD Ensembl Show fit	small muscle protein, X-linked
chr9_+_73418607 Show fit	0.06	ENSRNOT00000092547	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr8_+_19888667 Show fit	0.06	ENSRNOT00000078593	Zfp317 Links NCBI RGD Ensembl Show fit	zinc finger protein 317
chr7_+_42304534 Show fit	0.06	ENSRNOT00000085097	Kitlg Links NCBI RGD Ensembl Show fit	KIT ligand
chr10_+_103206014 Show fit	0.05	ENSRNOT00000004081	Ttyh2 Links NCBI RGD Ensembl Show fit	tweety family member 2
chr8_-_7426611 Show fit	0.05	ENSRNOT00000031492	Arhgap42 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 42
chr13_-_83457888 Show fit	0.05	ENSRNOT00000076289 ENSRNOT00000004065	Sft2d2 Links NCBI RGD Ensembl Show fit	SFT2 domain containing 2
chr12_+_25435567 Show fit	0.05	ENSRNOT00000092982	Gtf2i Links NCBI RGD Ensembl Show fit	general transcription factor II I
chr5_-_16799776 Show fit	0.05	ENSRNOT00000011721	Plag1 Links NCBI RGD Ensembl Show fit	PLAG1 zinc finger
chr1_+_238222521 Show fit	0.05	ENSRNOT00000024000	Aldh1a1 Links NCBI RGD Ensembl Show fit	aldehyde dehydrogenase 1 family, member A1
chr19_-_37528011 Show fit	0.05	ENSRNOT00000059628	Agrp Links NCBI RGD Ensembl Show fit	agouti related neuropeptide
chr9_+_66888393 Show fit	0.05	ENSRNOT00000023536	Carf Links NCBI RGD Ensembl Show fit	calcium responsive transcription factor
chr8_-_119012671 Show fit	0.04	ENSRNOT00000028435	Pth1r Links NCBI RGD Ensembl Show fit	parathyroid hormone 1 receptor
chr17_-_89923423 Show fit	0.04	ENSRNOT00000076964	Acbd5 Links NCBI RGD Ensembl Show fit	acyl-CoA binding domain containing 5
chr14_+_7026769 Show fit	0.04	ENSRNOT00000071955	LOC100359907 Links NCBI RGD Ensembl Show fit	secretory calcium-binding phosphoprotein proline-glutamine rich 1-like
chr18_-_43945273 Show fit	0.04	ENSRNOT00000088900	Dtwd2 Links NCBI RGD Ensembl Show fit	DTW domain containing 2
chr18_+_16146447 Show fit	0.04	ENSRNOT00000022117	Galnt1 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 1
chr1_+_101603222 Show fit	0.04	ENSRNOT00000033278	Izumo1 Links NCBI RGD Ensembl Show fit	izumo sperm-egg fusion 1
chr2_-_149444548 Show fit	0.04	ENSRNOT00000018600	P2ry12 Links NCBI RGD Ensembl Show fit	purinergic receptor P2Y12
chrX_+_151103576 Show fit	0.04	ENSRNOT00000015401	Slitrk2 Links NCBI RGD Ensembl Show fit	SLIT and NTRK-like family, member 2
chr15_-_54528480 Show fit	0.04	ENSRNOT00000066888	Fndc3a Links NCBI RGD Ensembl Show fit	fibronectin type III domain containing 3a
chr3_-_71845232 Show fit	0.04	ENSRNOT00000078645	Calcrl Links NCBI RGD Ensembl Show fit	calcitonin receptor like receptor
chr2_+_86996497 Show fit	0.03	ENSRNOT00000042058	Zfp455 Links NCBI RGD Ensembl Show fit	zinc finger protein 455
chr2_+_95320283 Show fit	0.03	ENSRNOT00000015537	Hey1 Links NCBI RGD Ensembl Show fit	hes-related family bHLH transcription factor with YRPW motif 1
chr9_-_88086488 Show fit	0.03	ENSRNOT00000019579	Irs1 Links NCBI RGD Ensembl Show fit	insulin receptor substrate 1
chr13_+_84474319 Show fit	0.03	ENSRNOT00000031367 ENSRNOT00000072244 ENSRNOT00000072897 ENSRNOT00000064168 ENSRNOT00000074954 ENSRNOT00000073696	Ildr2 Links NCBI RGD Ensembl Show fit	immunoglobulin-like domain containing receptor 2
chr14_+_36047144 Show fit	0.03	ENSRNOT00000003088	Lnx1 Links NCBI RGD Ensembl Show fit	ligand of numb-protein X 1
chrX_-_29648359 Show fit	0.03	ENSRNOT00000086721 ENSRNOT00000006777	Gpm6b Links NCBI RGD Ensembl Show fit	glycoprotein m6b
chr6_+_64789940 Show fit	0.02	ENSRNOT00000085979 ENSRNOT00000059739 ENSRNOT00000051908 ENSRNOT00000082793 ENSRNOT00000078583 ENSRNOT00000091677 ENSRNOT00000093241	Nrcam Links NCBI RGD Ensembl Show fit	neuronal cell adhesion molecule
chr6_+_2216623 Show fit	0.02	ENSRNOT00000008045	Rmdn2 Links NCBI RGD Ensembl Show fit	regulator of microtubule dynamics 2
chr20_+_3155652 Show fit	0.02	ENSRNOT00000042882	RT1-S2 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus S2
chr1_-_101095594 Show fit	0.02	ENSRNOT00000027944	Fcgrt Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor and transporter
chr1_-_78180216 Show fit	0.02	ENSRNOT00000071576	C5ar2 Links NCBI RGD Ensembl Show fit	complement component 5a receptor 2
chr10_+_61685645 Show fit	0.02	ENSRNOT00000003933	Mnt Links NCBI RGD Ensembl Show fit	MAX network transcriptional repressor
chrX_-_111191932 Show fit	0.02	ENSRNOT00000088050 ENSRNOT00000083613	Morc4 Links NCBI RGD Ensembl Show fit	MORC family CW-type zinc finger 4
chr3_+_148108539 Show fit	0.02	ENSRNOT00000010149	Rem1 Links NCBI RGD Ensembl Show fit	RRAD and GEM like GTPase 1
chr9_-_42839837 Show fit	0.02	ENSRNOT00000038610	Neurl3 Links NCBI RGD Ensembl Show fit	neuralized E3 ubiquitin protein ligase 3
chr16_+_6048004 Show fit	0.02	ENSRNOT00000020750	Actr8 Links NCBI RGD Ensembl Show fit	ARP8 actin-related protein 8 homolog
chr15_-_57651041 Show fit	0.02	ENSRNOT00000072138	Spert Links NCBI RGD Ensembl Show fit	spermatid associated
chr12_-_39641285 Show fit	0.02	ENSRNOT00000001729	Anapc7 Links NCBI RGD Ensembl Show fit	anaphase promoting complex subunit 7
chr15_+_62406873 Show fit	0.01	ENSRNOT00000047572	Olfm4 Links NCBI RGD Ensembl Show fit	olfactomedin 4
chr2_-_31753528 Show fit	0.01	ENSRNOT00000075057	Pik3r1 Links NCBI RGD Ensembl Show fit	phosphoinositide-3-kinase regulatory subunit 1
chr20_-_4542073 Show fit	0.01	ENSRNOT00000000477	Cfb Links NCBI RGD Ensembl Show fit	complement factor B
chr7_+_120923274 Show fit	0.01	ENSRNOT00000049247	Gtpbp1 Links NCBI RGD Ensembl Show fit	GTP binding protein 1
chr4_+_181315444 Show fit	0.01	ENSRNOT00000044147	Ppfibp1 Links NCBI RGD Ensembl Show fit	PPFIA binding protein 1
chr2_+_86996798 Show fit	0.01	ENSRNOT00000070821	Zfp455 Links NCBI RGD Ensembl Show fit	zinc finger protein 455
chr10_+_67810810 Show fit	0.01	ENSRNOT00000079156	Psmd11 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 11
chr5_+_6373583 Show fit	0.01	ENSRNOT00000084749	AABR07046778.1 Links NCBI RGD Ensembl Show fit
chr17_-_78812111 Show fit	0.01	ENSRNOT00000021506	Dclre1c Links NCBI RGD Ensembl Show fit	DNA cross-link repair 1C
chr19_-_29968424 Show fit	0.01	ENSRNOT00000024981	Inpp4b Links NCBI RGD Ensembl Show fit	inositol polyphosphate-4-phosphatase type II B
chr1_-_101819478 Show fit	0.01	ENSRNOT00000056181	Grwd1 Links NCBI RGD Ensembl Show fit	glutamate-rich WD repeat containing 1
chr4_-_148437961 Show fit	0.01	ENSRNOT00000082907	Alox5 Links NCBI RGD Ensembl Show fit	arachidonate 5-lipoxygenase
chr2_+_30685840 Show fit	0.01	ENSRNOT00000031385	Ccdc125 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 125
chr9_+_73378057 Show fit	0.01	ENSRNOT00000043627 ENSRNOT00000045766 ENSRNOT00000092445 ENSRNOT00000037974	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr7_-_105592804 Show fit	0.01	ENSRNOT00000006789	Adcy8 Links NCBI RGD Ensembl Show fit	adenylate cyclase 8
chr11_+_47061354 Show fit	0.01	ENSRNOT00000039997	Pcnp Links NCBI RGD Ensembl Show fit	PEST proteolytic signal containing nuclear protein
chr8_+_117297670 Show fit	0.01	ENSRNOT00000082628	Qars Links NCBI RGD Ensembl Show fit	glutaminyl-tRNA synthetase
chr14_+_39964588 Show fit	0.01	ENSRNOT00000003240	Gabrg1 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor gamma 1 subunit
chr10_+_67810655 Show fit	0.01	ENSRNOT00000064285	Psmd11 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 11
chr18_+_59748444 Show fit	0.01	ENSRNOT00000024752	St8sia3 Links NCBI RGD Ensembl Show fit	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
chr16_+_23447366 Show fit	0.01	ENSRNOT00000068629	Psd3 Links NCBI RGD Ensembl Show fit	pleckstrin and Sec7 domain containing 3
chr11_-_60547201 Show fit	0.01	ENSRNOT00000093151	Btla Links NCBI RGD Ensembl Show fit	B and T lymphocyte associated
chr9_-_121725716 Show fit	0.01	ENSRNOT00000087405	Adcyap1 Links NCBI RGD Ensembl Show fit	adenylate cyclase activating polypeptide 1
chr15_-_93307420 Show fit	0.01	ENSRNOT00000012195	Slitrk1 Links NCBI RGD Ensembl Show fit	SLIT and NTRK-like family, member 1
chr3_+_102925471 Show fit	0.00	ENSRNOT00000040364	Olr772 Links NCBI RGD Ensembl Show fit	olfactory receptor 772
chr18_+_55666027 Show fit	0.00	ENSRNOT00000045950	RGD1305184 Links NCBI RGD Ensembl Show fit	similar to CDNA sequence BC023105
chr5_-_136166786 Show fit	0.00	ENSRNOT00000026201	Rnf220 Links NCBI RGD Ensembl Show fit	ring finger protein 220
chr6_+_18880737 Show fit	0.00	ENSRNOT00000003432	Alkbh8 Links NCBI RGD Ensembl Show fit	alkB homolog 8, tRNA methyltransferase
chr7_-_140291620 Show fit	0.00	ENSRNOT00000088323	Adcy6 Links NCBI RGD Ensembl Show fit	adenylate cyclase 6
chr3_+_119561290 Show fit	0.00	ENSRNOT00000015843	Blvra Links NCBI RGD Ensembl Show fit	biliverdin reductase A
chr1_+_79631668 Show fit	0.00	ENSRNOT00000083546 ENSRNOT00000035286	Mill1 Links NCBI RGD Ensembl Show fit	MHC I like leukocyte 1
chr9_+_38536920 Show fit	0.00	ENSRNOT00000060452	Prim2 Links NCBI RGD Ensembl Show fit	primase (DNA) subunit 2
chrX_-_9999401 Show fit	0.00	ENSRNOT00000060992	Gpr82 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 82
chr17_+_53965562 Show fit	0.00	ENSRNOT00000090387	Ggps1 Links NCBI RGD Ensembl Show fit	geranylgeranyl diphosphate synthase 1
chr2_-_233743866 Show fit	0.00	ENSRNOT00000087062	Enpep Links NCBI RGD Ensembl Show fit	glutamyl aminopeptidase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.0	0.0	GO:1904694	negative regulation of vascular smooth muscle contraction(GO:1904694)
0.0	0.1	GO:0070662	negative regulation of mast cell apoptotic process(GO:0033026) mast cell proliferation(GO:0070662) regulation of mast cell proliferation(GO:0070666) positive regulation of mast cell proliferation(GO:0070668)
0.0	0.0	GO:1904139	microglial cell migration(GO:1904124) regulation of microglial cell migration(GO:1904139)
0.0	0.0	GO:0030242	pexophagy(GO:0030242)
0.0	0.0	GO:2000820	negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation(GO:2000820)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005927	muscle tendon junction(GO:0005927)
0.0	0.0	GO:0005899	insulin receptor complex(GO:0005899)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0018479	benzaldehyde dehydrogenase (NAD+) activity(GO:0018479)
0.0	0.0	GO:0001605	adrenomedullin receptor activity(GO:0001605)
0.0	0.0	GO:0035939	microsatellite binding(GO:0035939)