GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Mafa Links NCBI RGD Ensembl	ENSRNOG00000007668	MAF bZIP transcription factor A

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Mafa	rn6_v1_chr7_-_116781766_116781766	-0.24	7.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_145931583 Show fit	0.17	ENSRNOT00000016433	Cfap161 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 161
chr10_+_14828597 Show fit	0.16	ENSRNOT00000025434	Tekt4 Links NCBI RGD Ensembl Show fit	tektin 4
chr15_+_50891127 Show fit	0.13	ENSRNOT00000020728	Stc1 Links NCBI RGD Ensembl Show fit	stanniocalcin 1
chrX_-_111102464 Show fit	0.13	ENSRNOT00000084176	Ripply1 Links NCBI RGD Ensembl Show fit	ripply transcriptional repressor 1
chr10_-_46145548 Show fit	0.12	ENSRNOT00000033483	Pld6 Links NCBI RGD Ensembl Show fit	phospholipase D family, member 6
chr20_-_12938891 Show fit	0.12	ENSRNOT00000017141	RGD1564149 Links NCBI RGD Ensembl Show fit	similar to Protein C21orf58
chr2_-_187160373 Show fit	0.10	ENSRNOT00000018961	Ntrk1 Links NCBI RGD Ensembl Show fit	neurotrophic receptor tyrosine kinase 1
chr15_-_61873406 Show fit	0.09	ENSRNOT00000045115	LOC100360244 Links NCBI RGD Ensembl Show fit	LRRGT00053-like
chr6_+_102392828 Show fit	0.09	ENSRNOT00000089162	Rdh12 Links NCBI RGD Ensembl Show fit	retinol dehydrogenase 12 (all-trans/9-cis/11-cis)
chr1_-_254735548 Show fit	0.09	ENSRNOT00000025258	Ankrd1 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 1
chr1_-_215858034 Show fit	0.08	ENSRNOT00000027656	Ins2 Links NCBI RGD Ensembl Show fit	insulin 2
chr8_-_48774898 Show fit	0.08	ENSRNOT00000016303	Upk2 Links NCBI RGD Ensembl Show fit	uroplakin 2
chr10_+_94170766 Show fit	0.07	ENSRNOT00000010627	Ace Links NCBI RGD Ensembl Show fit	angiotensin I converting enzyme
chr5_+_3955227 Show fit	0.07	ENSRNOT00000009908	Msc Links NCBI RGD Ensembl Show fit	musculin
chr1_-_197770669 Show fit	0.07	ENSRNOT00000023563	Lat Links NCBI RGD Ensembl Show fit	linker for activation of T cells
chr1_+_245237736 Show fit	0.06	ENSRNOT00000035814	Vldlr Links NCBI RGD Ensembl Show fit	very low density lipoprotein receptor
chr8_+_32018560 Show fit	0.06	ENSRNOT00000007358	Adamts8 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 8
chr20_+_10438444 Show fit	0.06	ENSRNOT00000071248 ENSRNOT00000075545	Cryaa Links NCBI RGD Ensembl Show fit	crystallin, alpha A
chr8_-_58542844 Show fit	0.06	ENSRNOT00000012041	Elmod1 Links NCBI RGD Ensembl Show fit	ELMO domain containing 1
chr20_-_7930929 Show fit	0.06	ENSRNOT00000000607	Tead3 Links NCBI RGD Ensembl Show fit	TEA domain transcription factor 3
chr2_-_26870421 Show fit	0.05	ENSRNOT00000088791	AABR07007744.2 Links NCBI RGD Ensembl Show fit
chr1_-_224974203 Show fit	0.05	ENSRNOT00000065694	Tmem179b Links NCBI RGD Ensembl Show fit	transmembrane protein 179B
chr2_-_27949066 Show fit	0.05	ENSRNOT00000081472 ENSRNOT00000022138	Nsa2 Links NCBI RGD Ensembl Show fit	NSA2 ribosome biogenesis homolog
chr10_+_83081168 Show fit	0.05	ENSRNOT00000035023	Tac4 Links NCBI RGD Ensembl Show fit	tachykinin 4 (hemokinin)
chr3_-_60813869 Show fit	0.05	ENSRNOT00000058234	Atp5g3 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
chr11_+_17538063 Show fit	0.05	ENSRNOT00000031889 ENSRNOT00000090878	Chodl Links NCBI RGD Ensembl Show fit	chondrolectin
chr15_+_45834302 Show fit	0.05	ENSRNOT00000051307	Serpine3 Links NCBI RGD Ensembl Show fit	serpin family E member 3
chr8_-_107602263 Show fit	0.04	ENSRNOT00000017658	Esyt3 Links NCBI RGD Ensembl Show fit	extended synaptotagmin 3
chrX_+_123913072 Show fit	0.04	ENSRNOT00000071376	Rhox5 Links NCBI RGD Ensembl Show fit	reproductive homeobox 5
chr5_+_26493212 Show fit	0.04	ENSRNOT00000061328	Triqk Links NCBI RGD Ensembl Show fit	triple QxxK/R motif containing
chr1_-_87221826 Show fit	0.04	ENSRNOT00000046611 ENSRNOT00000028006	Spint2 Links NCBI RGD Ensembl Show fit	serine peptidase inhibitor, Kunitz type, 2
chr10_+_73333119 Show fit	0.04	ENSRNOT00000004736	Tbx4 Links NCBI RGD Ensembl Show fit	T-box 4
chr3_-_117766120 Show fit	0.04	ENSRNOT00000056022	Fbn1 Links NCBI RGD Ensembl Show fit	fibrillin 1
chrX_+_17823554 Show fit	0.04	ENSRNOT00000004118	Mycs Links NCBI RGD Ensembl Show fit	myc-like oncogene, s-myc protein
chr19_-_37525762 Show fit	0.04	ENSRNOT00000023606	Atp6v0d1 Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V0 subunit D1
chr19_-_11341863 Show fit	0.03	ENSRNOT00000025694	Mt4 Links NCBI RGD Ensembl Show fit	metallothionein 4
chr4_+_7282948 Show fit	0.03	ENSRNOT00000011052	Cdk5 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 5
chr18_+_65814026 Show fit	0.03	ENSRNOT00000016112	Mbd2 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 2
chr3_-_7203420 Show fit	0.03	ENSRNOT00000015236	Gfi1b Links NCBI RGD Ensembl Show fit	growth factor independent 1B transcriptional repressor
chr6_-_12554439 Show fit	0.03	ENSRNOT00000022481	Lhcgr Links NCBI RGD Ensembl Show fit	luteinizing hormone/choriogonadotropin receptor
chr20_-_11556312 Show fit	0.03	ENSRNOT00000091856	RGD1561557 Links NCBI RGD Ensembl Show fit	similar to chromosome 21 open reading frame 29
chr15_+_61873056 Show fit	0.03	ENSRNOT00000017086	Sugt1 Links NCBI RGD Ensembl Show fit	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone
chr1_-_101741441 Show fit	0.03	ENSRNOT00000028570	Sult2b1 Links NCBI RGD Ensembl Show fit	sulfotransferase family 2B member 1
chrX_-_10413984 Show fit	0.03	ENSRNOT00000039551 ENSRNOT00000091448	Ddx3x Links NCBI RGD Ensembl Show fit	DEAD-box helicase 3, X-linked
chr17_-_15478343 Show fit	0.03	ENSRNOT00000078029	Omd Links NCBI RGD Ensembl Show fit	osteomodulin
chrX_-_115908693 Show fit	0.03	ENSRNOT00000091423	Trpc5 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily C, member 5
chr20_-_21689553 Show fit	0.03	ENSRNOT00000038095	Tmem26 Links NCBI RGD Ensembl Show fit	transmembrane protein 26
chr17_-_14637832 Show fit	0.03	ENSRNOT00000074323	LOC103690116 Links NCBI RGD Ensembl Show fit	osteomodulin
chr8_+_132828091 Show fit	0.02	ENSRNOT00000008269	Ccr9 Links NCBI RGD Ensembl Show fit	C-C motif chemokine receptor 9
chr7_+_4951747 Show fit	0.02	ENSRNOT00000061482	AABR07055527.1 Links NCBI RGD Ensembl Show fit
chr13_-_74276964 Show fit	0.02	ENSRNOT00000005726	Tor3a Links NCBI RGD Ensembl Show fit	torsin family 3, member A
chr1_-_52495582 Show fit	0.02	ENSRNOT00000067142	Pde10a Links NCBI RGD Ensembl Show fit	phosphodiesterase 10A
chrX_+_156911345 Show fit	0.02	ENSRNOT00000080945	L1cam Links NCBI RGD Ensembl Show fit	L1 cell adhesion molecule
chrX_-_62903530 Show fit	0.02	ENSRNOT00000076652 ENSRNOT00000017370	Pdk3 Links NCBI RGD Ensembl Show fit	pyruvate dehydrogenase kinase 3
chr9_-_65693822 Show fit	0.02	ENSRNOT00000038431	Als2cr12 Links NCBI RGD Ensembl Show fit	amyotrophic lateral sclerosis 2 chromosome region, candidate 12
chr4_-_144318580 Show fit	0.02	ENSRNOT00000007591	Ssuh2 Links NCBI RGD Ensembl Show fit	ssu-2 homolog
chr13_-_25262469 Show fit	0.02	ENSRNOT00000019921	Rnf152 Links NCBI RGD Ensembl Show fit	ring finger protein 152
chr18_+_30172740 Show fit	0.02	ENSRNOT00000027340	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr18_+_44810388 Show fit	0.02	ENSRNOT00000021646 ENSRNOT00000089750	Hsd17b4 Links NCBI RGD Ensembl Show fit	hydroxysteroid (17-beta) dehydrogenase 4
chr1_-_167210919 Show fit	0.01	ENSRNOT00000027507	Chrna10 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic alpha 10 subunit
chr13_+_63526486 Show fit	0.01	ENSRNOT00000003788	Brinp3 Links NCBI RGD Ensembl Show fit	BMP/retinoic acid inducible neural specific 3
chr10_+_53818818 Show fit	0.01	ENSRNOT00000057260	Myh8 Links NCBI RGD Ensembl Show fit	myosin heavy chain 8
chr10_+_89174684 Show fit	0.01	ENSRNOT00000043754	Vps25 Links NCBI RGD Ensembl Show fit	vacuolar protein sorting 25
chr9_+_16543688 Show fit	0.01	ENSRNOT00000021868	Cnpy3 Links NCBI RGD Ensembl Show fit	canopy FGF signaling regulator 3
chr5_-_13097341 Show fit	0.01	ENSRNOT00000061884	Rb1cc1 Links NCBI RGD Ensembl Show fit	RB1-inducible coiled-coil 1
chrX_+_105134498 Show fit	0.01	ENSRNOT00000002058	Tmem35 Links NCBI RGD Ensembl Show fit	transmembrane protein 35
chr12_+_11215886 Show fit	0.01	ENSRNOT00000076896 ENSRNOT00000060924	Ptcd1 Links NCBI RGD Ensembl Show fit	pentatricopeptide repeat domain 1
chr9_-_45505767 Show fit	0.01	ENSRNOT00000033964	Lonrf2 Links NCBI RGD Ensembl Show fit	LON peptidase N-terminal domain and ring finger 2
chr3_+_171213936 Show fit	0.01	ENSRNOT00000031586	Pck1 Links NCBI RGD Ensembl Show fit	phosphoenolpyruvate carboxykinase 1
chr14_+_114126943 Show fit	0.01	ENSRNOT00000041638 ENSRNOT00000006443 ENSRNOT00000006957	Rtn4 Links NCBI RGD Ensembl Show fit	reticulon 4
chr1_-_213987053 Show fit	0.01	ENSRNOT00000072774	LOC100911519 Links NCBI RGD Ensembl Show fit	p53-induced protein with a death domain-like
chr12_-_22726982 Show fit	0.01	ENSRNOT00000001921	Plod3 Links NCBI RGD Ensembl Show fit	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
chr7_-_124423832 Show fit	0.01	ENSRNOT00000013994	Mcat Links NCBI RGD Ensembl Show fit	malonyl-CoA-acyl carrier protein transacylase
chr4_+_57715946 Show fit	0.00	ENSRNOT00000079059 ENSRNOT00000034429	Klhdc10 Links NCBI RGD Ensembl Show fit	kelch domain containing 10
chr1_+_199225100 Show fit	0.00	ENSRNOT00000088606	Setd1a Links NCBI RGD Ensembl Show fit	SET domain containing 1A
chr10_+_89181180 Show fit	0.00	ENSRNOT00000078931 ENSRNOT00000027770	Wnk4 Links NCBI RGD Ensembl Show fit	WNK lysine deficient protein kinase 4
chr1_-_225128740 Show fit	0.00	ENSRNOT00000026897	Rom1 Links NCBI RGD Ensembl Show fit	retinal outer segment membrane protein 1
chr12_+_46615649 Show fit	0.00	ENSRNOT00000086531 ENSRNOT00000089494	Bicdl1 Links NCBI RGD Ensembl Show fit	BICD family like cargo adaptor 1
chr5_-_58113553 Show fit	0.00	ENSRNOT00000046589	Arid3c Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 3C
chr10_-_88677055 Show fit	0.00	ENSRNOT00000025590	Ghdc Links NCBI RGD Ensembl Show fit	GH3 domain containing

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0008358	oocyte construction(GO:0007308) oocyte axis specification(GO:0007309) oocyte anterior/posterior axis specification(GO:0007314) pole plasm assembly(GO:0007315) maternal determination of anterior/posterior axis, embryo(GO:0008358) P granule organization(GO:0030719)
0.0	0.2	GO:0080154	regulation of fertilization(GO:0080154)
0.0	0.1	GO:0033861	negative regulation of NAD(P)H oxidase activity(GO:0033861)
0.0	0.1	GO:0014707	branchiomeric skeletal muscle development(GO:0014707)
0.0	0.1	GO:0061368	behavioral response to chemical pain(GO:0061366) behavioral response to formalin induced pain(GO:0061368)
0.0	0.1	GO:1903596	regulation of gap junction assembly(GO:1903596)
0.0	0.1	GO:0034436	glycoprotein transport(GO:0034436)
0.0	0.0	GO:0060672	epithelial cell differentiation involved in embryonic placenta development(GO:0060671) epithelial cell morphogenesis involved in placental branching(GO:0060672)
0.0	0.0	GO:0035582	sequestering of BMP in extracellular matrix(GO:0035582)
0.0	0.1	GO:0032525	somite rostral/caudal axis specification(GO:0032525)
0.0	0.1	GO:0001886	endothelial cell morphogenesis(GO:0001886)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0016533	cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031711	bradykinin receptor binding(GO:0031711) metallodipeptidase activity(GO:0070573)
0.0	0.1	GO:0005030	neurotrophin receptor activity(GO:0005030)
0.0	0.1	GO:0034437	glycoprotein transporter activity(GO:0034437)