GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Mef2c Links NCBI RGD Ensembl	ENSRNOG00000033134	myocyte enhancer factor 2C

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Mef2c	rn6_v1_chr2_+_11658568_11658568	-0.06	9.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_142912316 Show fit	0.24	ENSRNOT00000010171	Nr4a1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 4, group A, member 1
chr1_-_25839198 Show fit	0.19	ENSRNOT00000090388 ENSRNOT00000092757 ENSRNOT00000042072	Trdn Links NCBI RGD Ensembl Show fit	triadin
chr20_-_22459025 Show fit	0.14	ENSRNOT00000000792	Egr2 Links NCBI RGD Ensembl Show fit	early growth response 2
chr16_-_73827488 Show fit	0.13	ENSRNOT00000064070	Ank1 Links NCBI RGD Ensembl Show fit	ankyrin 1
chr3_-_170040953 Show fit	0.12	ENSRNOT00000005866	Cbln4 Links NCBI RGD Ensembl Show fit	cerebellin 4 precursor
chr1_+_215666628 Show fit	0.10	ENSRNOT00000040598 ENSRNOT00000066135 ENSRNOT00000051425 ENSRNOT00000080339 ENSRNOT00000066896 ENSRNOT00000063918	Tnnt3 Links NCBI RGD Ensembl Show fit	troponin T3, fast skeletal type
chr2_-_45518502 Show fit	0.10	ENSRNOT00000014627	Hspb3 Links NCBI RGD Ensembl Show fit	heat shock protein family B (small) member 3
chr18_-_26211445 Show fit	0.10	ENSRNOT00000027739	Nrep Links NCBI RGD Ensembl Show fit	neuronal regeneration related protein
chr1_+_219250265 Show fit	0.10	ENSRNOT00000024353	Doc2g Links NCBI RGD Ensembl Show fit	double C2-like domains, gamma
chr10_-_76039964 Show fit	0.09	ENSRNOT00000003164	Msi2 Links NCBI RGD Ensembl Show fit	musashi RNA-binding protein 2
chr1_-_199624783 Show fit	0.08	ENSRNOT00000026908	Cox6a2 Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 6A2
chr12_-_23841049 Show fit	0.08	ENSRNOT00000031555	Hspb1 Links NCBI RGD Ensembl Show fit	heat shock protein family B (small) member 1
chr13_+_52624878 Show fit	0.08	ENSRNOT00000076054 ENSRNOT00000076299	Tnni1 Links NCBI RGD Ensembl Show fit	troponin I1, slow skeletal type
chr3_+_58965552 Show fit	0.08	ENSRNOT00000002068	Map3k20 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase kinase kinase 20
chr1_+_31531143 Show fit	0.07	ENSRNOT00000034704	Lrrc14b Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 14B
chr5_-_114014277 Show fit	0.07	ENSRNOT00000011731	Jun Links NCBI RGD Ensembl Show fit	Jun proto-oncogene, AP-1 transcription factor subunit
chr2_+_204512302 Show fit	0.07	ENSRNOT00000021846	Casq2 Links NCBI RGD Ensembl Show fit	calsequestrin 2
chr11_+_9642365 Show fit	0.06	ENSRNOT00000087080 ENSRNOT00000042384	Robo1 Links NCBI RGD Ensembl Show fit	roundabout guidance receptor 1
chr10_-_4257868 Show fit	0.06	ENSRNOT00000035886	Tnfrsf17 Links NCBI RGD Ensembl Show fit	TNF receptor superfamily member 17
chr1_-_166912524 Show fit	0.06	ENSRNOT00000092952	Inppl1 Links NCBI RGD Ensembl Show fit	inositol polyphosphate phosphatase-like 1
chr5_+_147257678 Show fit	0.06	ENSRNOT00000066268	Rnf19b Links NCBI RGD Ensembl Show fit	ring finger protein 19B
chr10_-_86688730 Show fit	0.06	ENSRNOT00000055333	Nr1d1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 1, group D, member 1
chr1_+_100299626 Show fit	0.05	ENSRNOT00000092327 ENSRNOT00000044257	Shank1 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 1
chrX_+_33895769 Show fit	0.05	ENSRNOT00000085993 ENSRNOT00000079365	Reps2 Links NCBI RGD Ensembl Show fit	RALBP1 associated Eps domain containing protein 2
chr3_+_151126591 Show fit	0.05	ENSRNOT00000025859	Myh7b Links NCBI RGD Ensembl Show fit	myosin heavy chain 7B
chr16_+_72388880 Show fit	0.05	ENSRNOT00000072459	LOC684871 Links NCBI RGD Ensembl Show fit	similar to Protein C8orf4 (Thyroid cancer protein 1) (TC-1)
chr1_+_21748261 Show fit	0.05	ENSRNOT00000019519	Enpp1 Links NCBI RGD Ensembl Show fit	ectonucleotide pyrophosphatase/phosphodiesterase 1
chr2_+_198772937 Show fit	0.05	ENSRNOT00000028812	Itga10 Links NCBI RGD Ensembl Show fit	integrin subunit alpha 10
chr1_+_101178104 Show fit	0.05	ENSRNOT00000028072	Pth2 Links NCBI RGD Ensembl Show fit	parathyroid hormone 2
chr5_+_151776004 Show fit	0.05	ENSRNOT00000009683	Nr0b2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 0, group B, member 2
chr11_+_45888221 Show fit	0.04	ENSRNOT00000071932 ENSRNOT00000066008 ENSRNOT00000060802	Lnp1 Links NCBI RGD Ensembl Show fit	leukemia NUP98 fusion partner 1
chr13_-_90710148 Show fit	0.04	ENSRNOT00000010113 ENSRNOT00000080638	Kcnj9 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily J member 9
chr11_-_90406797 Show fit	0.04	ENSRNOT00000073049	Snai2 Links NCBI RGD Ensembl Show fit	snail family transcriptional repressor 2
chr6_+_73553210 Show fit	0.04	ENSRNOT00000006562	Akap6 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 6
chr3_+_79918969 Show fit	0.04	ENSRNOT00000016306	Spi1 Links NCBI RGD Ensembl Show fit	Spi-1 proto-oncogene
chr2_+_154604832 Show fit	0.04	ENSRNOT00000013777	Vom2r44 Links NCBI RGD Ensembl Show fit	vomeronasal 2 receptor 44
chr5_+_154598758 Show fit	0.04	ENSRNOT00000015776	Tcea3 Links NCBI RGD Ensembl Show fit	transcription elongation factor A3
chr15_+_34187223 Show fit	0.04	ENSRNOT00000024978	Cpne6 Links NCBI RGD Ensembl Show fit	copine 6
chr17_-_43422846 Show fit	0.04	ENSRNOT00000050526	Hist1h2aa Links NCBI RGD Ensembl Show fit	histone cluster 1 H2A family member a
chr3_+_56868167 Show fit	0.04	ENSRNOT00000087134	Gad1 Links NCBI RGD Ensembl Show fit	glutamate decarboxylase 1
chr3_+_161433410 Show fit	0.04	ENSRNOT00000024657	Slc12a5 Links NCBI RGD Ensembl Show fit	solute carrier family 12 member 5
chrX_+_71528988 Show fit	0.04	ENSRNOT00000075963	Ogt Links NCBI RGD Ensembl Show fit	O-linked N-acetylglucosamine (GlcNAc) transferase
chrX_+_159158194 Show fit	0.03	ENSRNOT00000043820 ENSRNOT00000001169 ENSRNOT00000083502	Fhl1 Links NCBI RGD Ensembl Show fit	four and a half LIM domains 1
chr13_+_52662996 Show fit	0.03	ENSRNOT00000047682	Tnnt2 Links NCBI RGD Ensembl Show fit	troponin T2, cardiac type
chr9_+_111028824 Show fit	0.03	ENSRNOT00000041418 ENSRNOT00000056457	Pam Links NCBI RGD Ensembl Show fit	peptidylglycine alpha-amidating monooxygenase
chr13_-_81214494 Show fit	0.03	ENSRNOT00000004950 ENSRNOT00000082385	Prrx1 Links NCBI RGD Ensembl Show fit	paired related homeobox 1
chr2_+_242634399 Show fit	0.03	ENSRNOT00000035700	Emcn Links NCBI RGD Ensembl Show fit	endomucin
chr3_-_123119460 Show fit	0.03	ENSRNOT00000028833	Avp Links NCBI RGD Ensembl Show fit	arginine vasopressin
chr10_+_86337728 Show fit	0.03	ENSRNOT00000085408	Tcap Links NCBI RGD Ensembl Show fit	titin-cap
chr2_-_172361779 Show fit	0.03	ENSRNOT00000085876	Schip1 Links NCBI RGD Ensembl Show fit	schwannomin interacting protein 1
chr17_+_57075218 Show fit	0.03	ENSRNOT00000089536	Crem Links NCBI RGD Ensembl Show fit	cAMP responsive element modulator
chr10_+_54352270 Show fit	0.03	ENSRNOT00000036752	Dhrs7c Links NCBI RGD Ensembl Show fit	dehydrogenase/reductase 7C
chr3_+_110442637 Show fit	0.03	ENSRNOT00000010471	Pak6 Links NCBI RGD Ensembl Show fit	p21 (RAC1) activated kinase 6
chr4_+_153874852 Show fit	0.03	ENSRNOT00000079744	Slc6a13 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 13
chr6_-_76608864 Show fit	0.03	ENSRNOT00000010824	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr11_-_74315248 Show fit	0.03	ENSRNOT00000002346	Hes1 Links NCBI RGD Ensembl Show fit	hes family bHLH transcription factor 1
chr2_-_247988462 Show fit	0.03	ENSRNOT00000022387	Pdlim5 Links NCBI RGD Ensembl Show fit	PDZ and LIM domain 5
chr5_-_160219812 Show fit	0.03	ENSRNOT00000016333	Plekhm2 Links NCBI RGD Ensembl Show fit	pleckstrin homology and RUN domain containing M2
chr17_-_55346279 Show fit	0.02	ENSRNOT00000025037	Svil Links NCBI RGD Ensembl Show fit	supervillin
chr9_-_9702306 Show fit	0.02	ENSRNOT00000082341	Trip10 Links NCBI RGD Ensembl Show fit	thyroid hormone receptor interactor 10
chr13_+_99136871 Show fit	0.02	ENSRNOT00000078263 ENSRNOT00000004350	Sde2 Links NCBI RGD Ensembl Show fit	SDE2 telomere maintenance homolog
chr5_-_22769907 Show fit	0.02	ENSRNOT00000047805 ENSRNOT00000076167 ENSRNOT00000076507 ENSRNOT00000076113 ENSRNOT00000083779	Asph Links NCBI RGD Ensembl Show fit	aspartate-beta-hydroxylase
chr2_-_104958034 Show fit	0.02	ENSRNOT00000080699	Gyg1 Links NCBI RGD Ensembl Show fit	glycogenin 1
chr5_-_139748489 Show fit	0.02	ENSRNOT00000078741	Nfyc Links NCBI RGD Ensembl Show fit	nuclear transcription factor Y subunit gamma
chr11_+_86520992 Show fit	0.02	ENSRNOT00000040954	Gp1bb Links NCBI RGD Ensembl Show fit	glycoprotein Ib platelet beta subunit
chr2_+_198721724 Show fit	0.02	ENSRNOT00000043535	Ankrd34a Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 34A
chr7_-_114305896 Show fit	0.02	ENSRNOT00000067327 ENSRNOT00000038172	Trappc9 Links NCBI RGD Ensembl Show fit	trafficking protein particle complex 9
chr3_+_150323116 Show fit	0.02	ENSRNOT00000023429 ENSRNOT00000080485	Raly Links NCBI RGD Ensembl Show fit	RALY heterogeneous nuclear ribonucleoprotein
chr1_-_56683731 Show fit	0.02	ENSRNOT00000014552	Thbs2 Links NCBI RGD Ensembl Show fit	thrombospondin 2
chr3_-_36660758 Show fit	0.02	ENSRNOT00000006111	Rnd3 Links NCBI RGD Ensembl Show fit	Rho family GTPase 3
chr7_+_70807867 Show fit	0.02	ENSRNOT00000010639	Stac3 Links NCBI RGD Ensembl Show fit	SH3 and cysteine rich domain 3
chr1_-_128341240 Show fit	0.02	ENSRNOT00000070864 ENSRNOT00000072915	Mef2a Links NCBI RGD Ensembl Show fit	myocyte enhancer factor 2a
chr5_+_25042710 Show fit	0.02	ENSRNOT00000061385	RGD1559904 Links NCBI RGD Ensembl Show fit	similar to mKIAA1429 protein
chr2_+_238257031 Show fit	0.02	ENSRNOT00000016066	Ints12 Links NCBI RGD Ensembl Show fit	integrator complex subunit 12
chr9_-_81864202 Show fit	0.02	ENSRNOT00000084964	Zfp142 Links NCBI RGD Ensembl Show fit	zinc finger protein 142
chr10_+_90217924 Show fit	0.02	ENSRNOT00000028388	Asb16 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box-containing 16
chr15_-_33250546 Show fit	0.02	ENSRNOT00000017857	RGD1565222 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931414P19
chr3_+_122114108 Show fit	0.02	ENSRNOT00000091935	Sirpa Links NCBI RGD Ensembl Show fit	signal-regulatory protein alpha
chr2_-_178057157 Show fit	0.02	ENSRNOT00000091135	Rapgef2 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 2
chr14_-_17171580 Show fit	0.02	ENSRNOT00000085525	Art3 Links NCBI RGD Ensembl Show fit	ADP-ribosyltransferase 3
chr12_+_17734133 Show fit	0.01	ENSRNOT00000042117	Pdgfa Links NCBI RGD Ensembl Show fit	platelet derived growth factor subunit A
chr13_-_99531959 Show fit	0.01	ENSRNOT00000005059	Wdr26 Links NCBI RGD Ensembl Show fit	WD repeat domain 26
chr15_+_39779648 Show fit	0.01	ENSRNOT00000084505	Cab39l Links NCBI RGD Ensembl Show fit	calcium binding protein 39-like
chr5_+_148528725 Show fit	0.01	ENSRNOT00000017325	Fabp3 Links NCBI RGD Ensembl Show fit	fatty acid binding protein 3
chr9_+_82571269 Show fit	0.01	ENSRNOT00000026941	Speg Links NCBI RGD Ensembl Show fit	SPEG complex locus
chr8_+_130416355 Show fit	0.01	ENSRNOT00000026234	Klhl40 Links NCBI RGD Ensembl Show fit	kelch-like family member 40
chr2_+_32820322 Show fit	0.01	ENSRNOT00000013768	Cd180 Links NCBI RGD Ensembl Show fit	CD180 molecule
chr8_-_76579099 Show fit	0.01	ENSRNOT00000088628	Fam81a Links NCBI RGD Ensembl Show fit	family with sequence similarity 81, member A
chr4_-_161850875 Show fit	0.01	ENSRNOT00000009467	Pzp Links NCBI RGD Ensembl Show fit	pregnancy-zone protein
chr10_+_89459650 Show fit	0.01	ENSRNOT00000028149 ENSRNOT00000077942	Nbr1 Links NCBI RGD Ensembl Show fit	NBR1, autophagy cargo receptor
chr15_-_33428942 Show fit	0.01	ENSRNOT00000019618 ENSRNOT00000092160	Slc7a8 Links NCBI RGD Ensembl Show fit	solute carrier family 7 member 8
chr10_-_16046033 Show fit	0.01	ENSRNOT00000089460	Cpeb4 Links NCBI RGD Ensembl Show fit	cytoplasmic polyadenylation element binding protein 4
chrX_-_9999401 Show fit	0.01	ENSRNOT00000060992	Gpr82 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 82
chr2_+_219598162 Show fit	0.01	ENSRNOT00000020297	Lrrc39 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 39
chr10_-_56558487 Show fit	0.01	ENSRNOT00000023256	Slc2a4 Links NCBI RGD Ensembl Show fit	solute carrier family 2 member 4
chr10_+_82032656 Show fit	0.01	ENSRNOT00000067751	Ankrd40 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 40
chr10_+_3218466 Show fit	0.01	ENSRNOT00000093629 ENSRNOT00000093338 ENSRNOT00000077695	Ntan1 Links NCBI RGD Ensembl Show fit	N-terminal asparagine amidase
chr5_-_152589719 Show fit	0.01	ENSRNOT00000022522	Extl1 Links NCBI RGD Ensembl Show fit	exostosin-like glycosyltransferase 1
chr9_+_47536824 Show fit	0.01	ENSRNOT00000049349	Tmem182 Links NCBI RGD Ensembl Show fit	transmembrane protein 182
chr18_+_63203063 Show fit	0.01	ENSRNOT00000024144	Prelid3a Links NCBI RGD Ensembl Show fit	PRELI domain containing 3A
chr1_-_221370322 Show fit	0.01	ENSRNOT00000028431	Capn1 Links NCBI RGD Ensembl Show fit	calpain 1
chr8_-_30222036 Show fit	0.01	ENSRNOT00000035454	Ntm Links NCBI RGD Ensembl Show fit	neurotrimin
chr7_+_11383116 Show fit	0.01	ENSRNOT00000066348	Nmrk2 Links NCBI RGD Ensembl Show fit	nicotinamide riboside kinase 2
chr14_-_43072843 Show fit	0.01	ENSRNOT00000064263	Limch1 Links NCBI RGD Ensembl Show fit	LIM and calponin homology domains 1
chr3_+_5709236 Show fit	0.01	ENSRNOT00000061201 ENSRNOT00000070887	Dbh Links NCBI RGD Ensembl Show fit	dopamine beta-hydroxylase
chr10_-_62699723 Show fit	0.01	ENSRNOT00000086706	Coro6 Links NCBI RGD Ensembl Show fit	coronin 6
chr5_+_58995249 Show fit	0.01	ENSRNOT00000023411	Ccdc107 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 107
chr8_+_67295727 Show fit	0.01	ENSRNOT00000020443	Anp32a Links NCBI RGD Ensembl Show fit	acidic nuclear phosphoprotein 32 family member A
chr7_-_107391184 Show fit	0.01	ENSRNOT00000056793	Tmem71 Links NCBI RGD Ensembl Show fit	transmembrane protein 71
chr18_+_73256085 Show fit	0.01	ENSRNOT00000080660	Hdhd2 Links NCBI RGD Ensembl Show fit	haloacid dehalogenase-like hydrolase domain containing 2
chr17_+_36334147 Show fit	0.01	ENSRNOT00000050261	E2f3 Links NCBI RGD Ensembl Show fit	E2F transcription factor 3
chr8_+_110982777 Show fit	0.00	ENSRNOT00000010992	Ky Links NCBI RGD Ensembl Show fit	kyphoscoliosis peptidase
chr9_-_113504605 Show fit	0.00	ENSRNOT00000067974	Rab31 Links NCBI RGD Ensembl Show fit	RAB31, member RAS oncogene family
chr2_-_261337163 Show fit	0.00	ENSRNOT00000030341	Tnni3k Links NCBI RGD Ensembl Show fit	TNNI3 interacting kinase
chr5_+_152533349 Show fit	0.00	ENSRNOT00000067524	Trim63 Links NCBI RGD Ensembl Show fit	tripartite motif containing 63
chr7_+_80351774 Show fit	0.00	ENSRNOT00000081948	Oxr1 Links NCBI RGD Ensembl Show fit	oxidation resistance 1
chr13_-_90602365 Show fit	0.00	ENSRNOT00000009344	Casq1 Links NCBI RGD Ensembl Show fit	calsequestrin 1
chr7_+_35309265 Show fit	0.00	ENSRNOT00000080291	Tmcc3 Links NCBI RGD Ensembl Show fit	transmembrane and coiled-coil domain family 3
chr9_-_81772851 Show fit	0.00	ENSRNOT00000032719	Usp37 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 37
chr3_+_79940561 Show fit	0.00	ENSRNOT00000016652	Mybpc3 Links NCBI RGD Ensembl Show fit	myosin binding protein C, cardiac
chr4_+_14001761 Show fit	0.00	ENSRNOT00000076519	Cd36 Links NCBI RGD Ensembl Show fit	CD36 molecule
chr10_-_16045835 Show fit	0.00	ENSRNOT00000064832	Cpeb4 Links NCBI RGD Ensembl Show fit	cytoplasmic polyadenylation element binding protein 4

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0090158	endoplasmic reticulum membrane organization(GO:0090158)
0.0	0.2	GO:0043435	response to corticotropin-releasing hormone(GO:0043435) cellular response to corticotropin-releasing hormone stimulus(GO:0071376)
0.0	0.1	GO:0021593	rhombomere morphogenesis(GO:0021593)
0.0	0.1	GO:0071348	cellular response to interleukin-11(GO:0071348) response to butyrate(GO:1903544)
0.0	0.1	GO:0060086	circadian temperature homeostasis(GO:0060086)
0.0	0.0	GO:0030505	inorganic diphosphate transport(GO:0030505)
0.0	0.0	GO:0070563	negative regulation of vitamin D receptor signaling pathway(GO:0070563)
0.0	0.1	GO:0050893	sensory processing(GO:0050893)
0.0	0.1	GO:0050925	negative regulation of negative chemotaxis(GO:0050925)
0.0	0.1	GO:0051365	cellular response to potassium ion starvation(GO:0051365)
0.0	0.0	GO:0032972	regulation of muscle filament sliding speed(GO:0032972)
0.0	0.0	GO:1902261	positive regulation of delayed rectifier potassium channel activity(GO:1902261)
0.0	0.0	GO:0045347	negative regulation of MHC class II biosynthetic process(GO:0045347)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0014701	junctional sarcoplasmic reticulum membrane(GO:0014701)
0.0	0.2	GO:0097512	cardiac myofibril(GO:0097512)
0.0	0.1	GO:0033018	sarcoplasmic reticulum lumen(GO:0033018)
0.0	0.1	GO:0035976	AP1 complex(GO:0035976)
0.0	0.1	GO:0014731	spectrin-associated cytoskeleton(GO:0014731)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0030172	troponin C binding(GO:0030172)
0.0	0.1	GO:0008093	cytoskeletal adaptor activity(GO:0008093)
0.0	0.0	GO:0004528	phosphodiesterase I activity(GO:0004528)
0.0	0.0	GO:0097363	protein O-GlcNAc transferase activity(GO:0097363)