GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Mga Links NCBI RGD Ensembl	ENSRNOG00000006378	MGA, MAX dimerization protein

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Mga	rn6_v1_chr3_+_111699021_111699087	0.15	8.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_+_72540538 Show fit	0.09	ENSRNOT00000012379	Aplnr Links NCBI RGD Ensembl Show fit	apelin receptor
chr17_-_78910671 Show fit	0.08	ENSRNOT00000064609	Acbd7 Links NCBI RGD Ensembl Show fit	acyl-CoA binding domain containing 7
chr7_+_119820537 Show fit	0.06	ENSRNOT00000077256 ENSRNOT00000056221	Cyth4 Links NCBI RGD Ensembl Show fit	cytohesin 4
chr10_+_105498728 Show fit	0.06	ENSRNOT00000032163	Sphk1 Links NCBI RGD Ensembl Show fit	sphingosine kinase 1
chr14_+_104250617 Show fit	0.06	ENSRNOT00000079874	Spred2 Links NCBI RGD Ensembl Show fit	sprouty-related, EVH1 domain containing 2
chr16_-_81434363 Show fit	0.05	ENSRNOT00000080963	Rasa3 Links NCBI RGD Ensembl Show fit	RAS p21 protein activator 3
chr12_+_31530699 Show fit	0.05	ENSRNOT00000033379 ENSRNOT00000067867	Rimbp2 Links NCBI RGD Ensembl Show fit	RIMS binding protein 2
chr1_+_282134981 Show fit	0.05	ENSRNOT00000036203	Nanos1 Links NCBI RGD Ensembl Show fit	nanos C2HC-type zinc finger 1
chr7_-_117680004 Show fit	0.04	ENSRNOT00000040422	Slc39a4 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 4
chr4_+_163162211 Show fit	0.04	ENSRNOT00000082537	Clec1b Links NCBI RGD Ensembl Show fit	C-type lectin domain family 1, member B
chr17_+_43632397 Show fit	0.04	ENSRNOT00000013790	Hist1h2ah Links NCBI RGD Ensembl Show fit	histone cluster 1, H2ah
chr18_-_70924708 Show fit	0.04	ENSRNOT00000025257	Lipg Links NCBI RGD Ensembl Show fit	lipase G, endothelial type
chr2_-_195678848 Show fit	0.04	ENSRNOT00000028303 ENSRNOT00000075569	Oaz3 Links NCBI RGD Ensembl Show fit	ornithine decarboxylase antizyme 3
chr1_+_29191192 Show fit	0.03	ENSRNOT00000018718	Hey2 Links NCBI RGD Ensembl Show fit	hes-related family bHLH transcription factor with YRPW motif 2
chr1_+_65781547 Show fit	0.03	ENSRNOT00000026204	Zfp329 Links NCBI RGD Ensembl Show fit	zinc finger protein 329
chr7_+_120176530 Show fit	0.03	ENSRNOT00000087548	Triobp Links NCBI RGD Ensembl Show fit	TRIO and F-actin binding protein
chr6_+_106496992 Show fit	0.03	ENSRNOT00000086136 ENSRNOT00000058181	Rgs6 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 6
chr7_+_58366192 Show fit	0.03	ENSRNOT00000081891	Zfc3h1 Links NCBI RGD Ensembl Show fit	zinc finger, C3H1-type containing
chr7_+_25808419 Show fit	0.03	ENSRNOT00000091571	Rfx4 Links NCBI RGD Ensembl Show fit	regulatory factor X4
chr6_-_123405246 Show fit	0.03	ENSRNOT00000083665	Foxn3 Links NCBI RGD Ensembl Show fit	forkhead box N3
chr8_-_50526843 Show fit	0.03	ENSRNOT00000092188	AABR07070085.1 Links NCBI RGD Ensembl Show fit
chr6_+_132242328 Show fit	0.03	ENSRNOT00000081088	Cyp46a1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 46, subfamily a, polypeptide 1
chr5_+_119727839 Show fit	0.03	ENSRNOT00000014354	Cachd1 Links NCBI RGD Ensembl Show fit	cache domain containing 1
chr1_+_127604197 Show fit	0.03	ENSRNOT00000018463	Lins1 Links NCBI RGD Ensembl Show fit	lines homolog 1
chr19_-_17494516 Show fit	0.03	ENSRNOT00000078786 ENSRNOT00000076138	Chd9 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 9
chrX_+_45637415 Show fit	0.03	ENSRNOT00000050544	RGD1563378 Links NCBI RGD Ensembl Show fit	similar to ferritin heavy polypeptide-like 17
chr2_+_187512164 Show fit	0.03	ENSRNOT00000051394	Mef2d Links NCBI RGD Ensembl Show fit	myocyte enhancer factor 2D
chrX_-_1786978 Show fit	0.03	ENSRNOT00000011317	Rbm10 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 10
chr10_-_110232843 Show fit	0.02	ENSRNOT00000054934	Cd7 Links NCBI RGD Ensembl Show fit	Cd7 molecule
chr4_+_152437966 Show fit	0.02	ENSRNOT00000013070	Rad52 Links NCBI RGD Ensembl Show fit	RAD52 homolog, DNA repair protein
chr7_+_126096793 Show fit	0.02	ENSRNOT00000047234 ENSRNOT00000088042	Fbln1 Links NCBI RGD Ensembl Show fit	fibulin 1
chr9_+_82632230 Show fit	0.02	ENSRNOT00000085165	Gmppa Links NCBI RGD Ensembl Show fit	GDP-mannose pyrophosphorylase A
chr8_-_114449956 Show fit	0.02	ENSRNOT00000056414	Col6a6 Links NCBI RGD Ensembl Show fit	collagen type VI alpha 6 chain
chr10_+_105500290 Show fit	0.02	ENSRNOT00000079080 ENSRNOT00000083593	Sphk1 Links NCBI RGD Ensembl Show fit	sphingosine kinase 1
chr2_+_188141350 Show fit	0.02	ENSRNOT00000078913	Gon4l Links NCBI RGD Ensembl Show fit	gon-4 like
chr8_-_132027006 Show fit	0.02	ENSRNOT00000050963	LOC367195 Links NCBI RGD Ensembl Show fit	similar to 60S RIBOSOMAL PROTEIN L7
chr1_-_101095594 Show fit	0.02	ENSRNOT00000027944	Fcgrt Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor and transporter
chr9_+_82632384 Show fit	0.02	ENSRNOT00000027064	Gmppa Links NCBI RGD Ensembl Show fit	GDP-mannose pyrophosphorylase A
chr8_+_16287804 Show fit	0.02	ENSRNOT00000024691	Vkorc1l1 Links NCBI RGD Ensembl Show fit	vitamin K epoxide reductase complex, subunit 1-like 1
chr10_-_31359699 Show fit	0.02	ENSRNOT00000081280	Cyfip2 Links NCBI RGD Ensembl Show fit	cytoplasmic FMR1 interacting protein 2
chr8_-_107656861 Show fit	0.02	ENSRNOT00000050374	Mras Links NCBI RGD Ensembl Show fit	muscle RAS oncogene homolog
chr1_-_256013495 Show fit	0.02	ENSRNOT00000023342	Ide Links NCBI RGD Ensembl Show fit	insulin degrading enzyme
chr4_+_181481147 Show fit	0.01	ENSRNOT00000002523	Klhl42 Links NCBI RGD Ensembl Show fit	kelch-like family, member 42
chr20_-_5618254 Show fit	0.01	ENSRNOT00000092326 ENSRNOT00000000576	Bak1 Links NCBI RGD Ensembl Show fit	BCL2-antagonist/killer 1
chr9_-_65442257 Show fit	0.01	ENSRNOT00000037660	Fam126b Links NCBI RGD Ensembl Show fit	family with sequence similarity 126, member B
chr3_-_177095597 Show fit	0.01	ENSRNOT00000029386	Samd10 Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 10
chr6_+_113898420 Show fit	0.01	ENSRNOT00000064872	Nrxn3 Links NCBI RGD Ensembl Show fit	neurexin 3
chr2_-_240611560 Show fit	0.01	ENSRNOT00000074632	Cisd2 Links NCBI RGD Ensembl Show fit	CDGSH iron sulfur domain 2
chr4_+_85427555 Show fit	0.01	ENSRNOT00000015469	Fam188b Links NCBI RGD Ensembl Show fit	family with sequence similarity 188, member B
chr14_+_75880410 Show fit	0.01	ENSRNOT00000014078	Hs3st1 Links NCBI RGD Ensembl Show fit	heparan sulfate-glucosamine 3-sulfotransferase 1
chr5_+_69833225 Show fit	0.01	ENSRNOT00000013759	Nipsnap3b Links NCBI RGD Ensembl Show fit	nipsnap homolog 3B
chr7_+_61165640 Show fit	0.01	ENSRNOT00000087955	Mdm1 Links NCBI RGD Ensembl Show fit	Mdm1 nuclear protein
chr20_-_14393793 Show fit	0.01	ENSRNOT00000001764	Specc1l Links NCBI RGD Ensembl Show fit	sperm antigen with calponin homology and coiled-coil domains 1-like
chr4_-_78342863 Show fit	0.01	ENSRNOT00000049038	Gimap6 Links NCBI RGD Ensembl Show fit	GTPase, IMAP family member 6
chr10_-_56167426 Show fit	0.01	ENSRNOT00000013955	Efnb3 Links NCBI RGD Ensembl Show fit	ephrin B3
chr8_+_131845696 Show fit	0.01	ENSRNOT00000005440	Tcaim Links NCBI RGD Ensembl Show fit	T cell activation inhibitor, mitochondrial
chr1_-_90151405 Show fit	0.01	ENSRNOT00000028688	RGD1308428 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931406P16
chr1_-_47477524 Show fit	0.01	ENSRNOT00000067916	Rsph3 Links NCBI RGD Ensembl Show fit	radial spoke 3 homolog
chr20_-_7219548 Show fit	0.01	ENSRNOT00000033907	Rps10 Links NCBI RGD Ensembl Show fit	ribosomal protein S10
chr2_+_155076464 Show fit	0.01	ENSRNOT00000057619	LOC691033 Links NCBI RGD Ensembl Show fit	similar to GTPase activating protein testicular GAP1
chrX_-_118513061 Show fit	0.01	ENSRNOT00000043338	Il13ra2 Links NCBI RGD Ensembl Show fit	interleukin 13 receptor subunit alpha 2
chr5_+_68717519 Show fit	0.01	ENSRNOT00000066226	Smc2 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 2
chr12_-_2610917 Show fit	0.01	ENSRNOT00000034124	Evi5l Links NCBI RGD Ensembl Show fit	ecotropic viral integration site 5-like
chr8_-_22929294 Show fit	0.01	ENSRNOT00000015609	Rab3d Links NCBI RGD Ensembl Show fit	RAB3D, member RAS oncogene family
chr1_-_81152384 Show fit	0.01	ENSRNOT00000026263 ENSRNOT00000077305	Zfp94 Links NCBI RGD Ensembl Show fit	zinc finger protein 94
chr16_+_80729400 Show fit	0.01	ENSRNOT00000036383	Tdrp Links NCBI RGD Ensembl Show fit	testis development related protein
chr8_+_5768811 Show fit	0.01	ENSRNOT00000013936	Mmp8 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 8
chr19_-_25220010 Show fit	0.01	ENSRNOT00000008786	Dcaf15 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 15
chr1_+_104106245 Show fit	0.01	ENSRNOT00000019175 ENSRNOT00000081660	Zdhhc13 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 13
chr6_+_12253788 Show fit	0.01	ENSRNOT00000061675	Ppp1r21 Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 21
chr5_-_162602339 Show fit	0.01	ENSRNOT00000071779	RGD1563334 Links NCBI RGD Ensembl Show fit	similar to novel protein similar to esterases
chr5_-_153840178 Show fit	0.01	ENSRNOT00000025075	Nipal3 Links NCBI RGD Ensembl Show fit	NIPA-like domain containing 3
chr6_-_41842817 Show fit	0.01	ENSRNOT00000084155	Lpin1 Links NCBI RGD Ensembl Show fit	lipin 1
chr14_+_33108024 Show fit	0.01	ENSRNOT00000090350 ENSRNOT00000067650 ENSRNOT00000077242	Noa1 Links NCBI RGD Ensembl Show fit	nitric oxide associated 1
chr4_+_180062799 Show fit	0.01	ENSRNOT00000021623	Rassf8 Links NCBI RGD Ensembl Show fit	Ras association domain family member 8
chr7_-_70661891 Show fit	0.00	ENSRNOT00000010240	Inhbc Links NCBI RGD Ensembl Show fit	inhibin beta C subunit
chr9_+_61738471 Show fit	0.00	ENSRNOT00000090305	AABR07067762.1 Links NCBI RGD Ensembl Show fit
chr1_-_80271001 Show fit	0.00	ENSRNOT00000034266	Cd3eap Links NCBI RGD Ensembl Show fit	CD3e molecule associated protein
chr5_+_157820908 Show fit	0.00	ENSRNOT00000068168	Emc1 Links NCBI RGD Ensembl Show fit	ER membrane protein complex subunit 1
chr6_-_79306443 Show fit	0.00	ENSRNOT00000030706	Clec14a Links NCBI RGD Ensembl Show fit	C-type lectin domain family 14, member A
chr9_+_100956477 Show fit	0.00	ENSRNOT00000078222	D2hgdh Links NCBI RGD Ensembl Show fit	D-2-hydroxyglutarate dehydrogenase
chr16_+_80729959 Show fit	0.00	ENSRNOT00000082049	Tdrp Links NCBI RGD Ensembl Show fit	testis development related protein
chr8_+_119524039 Show fit	0.00	ENSRNOT00000056050	Epm2aip1 Links NCBI RGD Ensembl Show fit	EPM2A interacting protein 1
chr18_+_70248713 Show fit	0.00	ENSRNOT00000032202	Mbd1 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 1
chr16_-_81880502 Show fit	0.00	ENSRNOT00000079096	Mcf2l Links NCBI RGD Ensembl Show fit	MCF.2 cell line derived transforming sequence-like
chr4_-_118487633 Show fit	0.00	ENSRNOT00000068093	Gmcl1 Links NCBI RGD Ensembl Show fit	germ cell-less, spermatogenesis associated 1
chr7_-_14369821 Show fit	0.00	ENSRNOT00000008560	Akap8l Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 8 like
chrX_+_122507374 Show fit	0.00	ENSRNOT00000032275 ENSRNOT00000080517	Dock11 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 11
chr18_-_43945273 Show fit	0.00	ENSRNOT00000088900	Dtwd2 Links NCBI RGD Ensembl Show fit	DTW domain containing 2
chr5_-_57683932 Show fit	0.00	ENSRNOT00000074796	Dcaf12 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 12
chrX_+_76083549 Show fit	0.00	ENSRNOT00000003573	Magee1 Links NCBI RGD Ensembl Show fit	MAGE family member E1
chr2_-_34923024 Show fit	0.00	ENSRNOT00000090060	Cwc27 Links NCBI RGD Ensembl Show fit	CWC27 spliceosome-associated protein homolog
chr9_+_69497121 Show fit	0.00	ENSRNOT00000042562	Nrp2 Links NCBI RGD Ensembl Show fit	neuropilin 2
chr3_-_12007570 Show fit	0.00	ENSRNOT00000060186	Lrsam1 Links NCBI RGD Ensembl Show fit	leucine rich repeat and sterile alpha motif containing 1
chr7_+_120273117 Show fit	0.00	ENSRNOT00000014349	Galr3 Links NCBI RGD Ensembl Show fit	galanin receptor 3
chr1_-_82108083 Show fit	0.00	ENSRNOT00000027677 ENSRNOT00000084530	Gsk3a Links NCBI RGD Ensembl Show fit	glycogen synthase kinase 3 alpha
chr2_+_140541619 Show fit	0.00	ENSRNOT00000017396	Rab33b Links NCBI RGD Ensembl Show fit	RAB33B, member RAS oncogene family
chrX_-_2657155 Show fit	0.00	ENSRNOT00000005630	Chst7 Links NCBI RGD Ensembl Show fit	carbohydrate sulfotransferase 7
chr10_-_74119009 Show fit	0.00	ENSRNOT00000085712 ENSRNOT00000006926	Dhx40 Links NCBI RGD Ensembl Show fit	DEAH-box helicase 40
chr2_-_140464607 Show fit	0.00	ENSRNOT00000058190	Ndufc1 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit C1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019371	cyclooxygenase pathway(GO:0019371)
0.0	0.0	GO:0098749	cerebellar neuron development(GO:0098749)
0.0	0.0	GO:0034224	cellular response to zinc ion starvation(GO:0034224)
0.0	0.0	GO:0010986	regulation of high-density lipoprotein particle clearance(GO:0010982) positive regulation of lipoprotein particle clearance(GO:0010986)
0.0	0.0	GO:1902268	negative regulation of polyamine transmembrane transport(GO:1902268)
0.0	0.0	GO:2000820	cardiac vascular smooth muscle cell development(GO:0060948) negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation(GO:2000820)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0008481	sphinganine kinase activity(GO:0008481)
0.0	0.0	GO:0015489	ornithine decarboxylase inhibitor activity(GO:0008073) polyamine transmembrane transporter activity(GO:0015203) putrescine transmembrane transporter activity(GO:0015489)
0.0	0.0	GO:0035939	microsatellite binding(GO:0035939)