GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Msx1 Links NCBI RGD Ensembl	ENSRNOG00000006876	msh homeobox 1
Lhx9 Links NCBI RGD Ensembl	ENSRNOG00000010357	LIM homeobox 9
Barx1 Links NCBI RGD Ensembl	ENSRNOG00000016915	BARX homeobox 1
Rax Links NCBI RGD Ensembl	ENSRNOG00000016944	retina and anterior neural fold homeobox
Dlx6 Links NCBI RGD Ensembl	ENSRNOG00000010822	distal-less homeobox 6

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Msx1	rn6_v1_chr14_+_77712240_77712240	0.85	6.7e-02	Click!
Lhx9	rn6_v1_chr13_-_55878094_55878094	0.75	1.4e-01	Click!
Barx1	rn6_v1_chr17_-_14828329_14828329	-0.68	2.1e-01	Click!
Rax	rn6_v1_chr18_-_61642056_61642056	0.39	5.2e-01	Click!
Dlx6	rn6_v1_chr4_+_32373641_32373641	-0.37	5.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_88670430 Show fit	0.38	ENSRNOT00000025547	Hcrt Links NCBI RGD Ensembl Show fit	hypocretin neuropeptide precursor
chr6_+_8886591 Show fit	0.30	ENSRNOT00000091510 ENSRNOT00000089174	Six3 Links NCBI RGD Ensembl Show fit	SIX homeobox 3
chr12_-_2174131 Show fit	0.10	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr4_-_80395502 Show fit	0.10	ENSRNOT00000014437	Npvf Links NCBI RGD Ensembl Show fit	neuropeptide VF precursor
chr2_+_210880777 Show fit	0.09	ENSRNOT00000026237	Gnat2 Links NCBI RGD Ensembl Show fit	G protein subunit alpha transducin 2
chr20_+_44680449 Show fit	0.07	ENSRNOT00000000728	Traf3ip2 Links NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr2_+_145174876 Show fit	0.07	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr3_+_5709236 Show fit	0.07	ENSRNOT00000061201 ENSRNOT00000070887	Dbh Links NCBI RGD Ensembl Show fit	dopamine beta-hydroxylase
chr15_+_44441856 Show fit	0.06	ENSRNOT00000018006	Gnrh1 Links NCBI RGD Ensembl Show fit	gonadotropin releasing hormone 1
chr2_-_235249571 Show fit	0.05	ENSRNOT00000093631 ENSRNOT00000085096	Rrh Links NCBI RGD Ensembl Show fit	retinal pigment epithelium derived rhodopsin homolog
chr3_-_165537940 Show fit	0.05	ENSRNOT00000071119 ENSRNOT00000070964	Sall4 Links NCBI RGD Ensembl Show fit	spalt-like transcription factor 4
chr5_+_50381244 Show fit	0.05	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr9_+_117795132 Show fit	0.04	ENSRNOT00000086943	Akain1 Links NCBI RGD Ensembl Show fit	A-kinase anchor inhibitor 1
chr10_-_87232723 Show fit	0.04	ENSRNOT00000015150	Krt25 Links NCBI RGD Ensembl Show fit	keratin 25
chr15_-_95514259 Show fit	0.04	ENSRNOT00000038433	Slitrk6 Links NCBI RGD Ensembl Show fit	SLIT and NTRK-like family, member 6
chrX_+_118197217 Show fit	0.04	ENSRNOT00000090922	Htr2c Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 2C
chr1_+_101178104 Show fit	0.04	ENSRNOT00000028072	Pth2 Links NCBI RGD Ensembl Show fit	parathyroid hormone 2
chr14_+_59611434 Show fit	0.04	ENSRNOT00000065366	Cckar Links NCBI RGD Ensembl Show fit	cholecystokinin A receptor
chr3_+_9403840 Show fit	0.04	ENSRNOT00000071380	NEWGENE_735020 Links NCBI RGD Ensembl Show fit	pyroglutamylated RFamide peptide
chr15_+_11298478 Show fit	0.03	ENSRNOT00000007672	Lrrc3b Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 3B
chr9_-_85243001 Show fit	0.03	ENSRNOT00000020219	Scg2 Links NCBI RGD Ensembl Show fit	secretogranin II
chr6_-_77421286 Show fit	0.03	ENSRNOT00000011453	Nkx2-1 Links NCBI RGD Ensembl Show fit	NK2 homeobox 1
chr8_+_47674321 Show fit	0.03	ENSRNOT00000026170 ENSRNOT00000078776	Trim29 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 29
chr12_-_47142852 Show fit	0.03	ENSRNOT00000001591	Pop5 Links NCBI RGD Ensembl Show fit	POP5 homolog, ribonuclease P/MRP subunit
chr1_-_48825364 Show fit	0.03	ENSRNOT00000024213	Agpat4 Links NCBI RGD Ensembl Show fit	1-acylglycerol-3-phosphate O-acyltransferase 4
chr8_+_71914867 Show fit	0.02	ENSRNOT00000023372	Dapk2 Links NCBI RGD Ensembl Show fit	death-associated protein kinase 2
chr2_+_198755262 Show fit	0.02	ENSRNOT00000028807	Rbm8a Links NCBI RGD Ensembl Show fit	RNA binding motif protein 8A
chr10_-_88172910 Show fit	0.02	ENSRNOT00000046956	Krt42 Links NCBI RGD Ensembl Show fit	keratin 42
chr20_-_3728844 Show fit	0.02	ENSRNOT00000074958	Psors1c2 Links NCBI RGD Ensembl Show fit	psoriasis susceptibility 1 candidate 2
chr12_-_45801842 Show fit	0.02	ENSRNOT00000078837	AABR07036513.1 Links NCBI RGD Ensembl Show fit
chr2_-_219262901 Show fit	0.02	ENSRNOT00000037068	Gpr88 Links NCBI RGD Ensembl Show fit	G-protein coupled receptor 88
chr12_+_24978483 Show fit	0.01	ENSRNOT00000040069	Eln Links NCBI RGD Ensembl Show fit	elastin
chr14_+_76732650 Show fit	0.01	ENSRNOT00000088197	Clnk Links NCBI RGD Ensembl Show fit	cytokine-dependent hematopoietic cell linker
chr3_+_45683993 Show fit	0.01	ENSRNOT00000038983	Tanc1 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
chr17_+_11683862 Show fit	0.01	ENSRNOT00000024766	Msx2 Links NCBI RGD Ensembl Show fit	msh homeobox 2
chr8_+_106449321 Show fit	0.01	ENSRNOT00000018622	Rbp1 Links NCBI RGD Ensembl Show fit	retinol binding protein 1
chr5_-_28131133 Show fit	0.01	ENSRNOT00000067331	Slc26a7 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 7
chr11_-_32550539 Show fit	0.01	ENSRNOT00000002715	Rcan1 Links NCBI RGD Ensembl Show fit	regulator of calcineurin 1
chr4_+_6827429 Show fit	0.01	ENSRNOT00000071737	Rheb Links NCBI RGD Ensembl Show fit	Ras homolog enriched in brain
chr1_+_185863043 Show fit	0.01	ENSRNOT00000079072	Sox6 Links NCBI RGD Ensembl Show fit	SRY box 6
chr16_+_63958645 Show fit	0.01	ENSRNOT00000081522 ENSRNOT00000082355 ENSRNOT00000013991	Nrg1 Links NCBI RGD Ensembl Show fit	neuregulin 1
chr6_-_125723732 Show fit	0.01	ENSRNOT00000084815	Fbln5 Links NCBI RGD Ensembl Show fit	fibulin 5
chr1_-_279277339 Show fit	0.01	ENSRNOT00000023667	Gfra1 Links NCBI RGD Ensembl Show fit	GDNF family receptor alpha 1
chr3_+_122544788 Show fit	0.01	ENSRNOT00000063828	Tgm3 Links NCBI RGD Ensembl Show fit	transglutaminase 3
chr3_-_171342646 Show fit	0.01	ENSRNOT00000071853	Pmepa1 Links NCBI RGD Ensembl Show fit	prostate transmembrane protein, androgen induced 1
chr4_-_67610710 Show fit	0.01	ENSRNOT00000039067	Mrps33 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein S33
chr9_+_40817654 Show fit	0.01	ENSRNOT00000037392	AABR07067339.1 Links NCBI RGD Ensembl Show fit
chr4_+_61924013 Show fit	0.01	ENSRNOT00000090717	Bpgm Links NCBI RGD Ensembl Show fit	bisphosphoglycerate mutase
chr5_-_28130803 Show fit	0.01	ENSRNOT00000093186	Slc26a7 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 7
chrX_+_6273733 Show fit	0.01	ENSRNOT00000074275	Ndp Links NCBI RGD Ensembl Show fit	NDP, norrin cystine knot growth factor
chr1_+_105284753 Show fit	0.01	ENSRNOT00000041950	Slc6a5 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 5
chr2_+_158097843 Show fit	0.01	ENSRNOT00000016541	Ptx3 Links NCBI RGD Ensembl Show fit	pentraxin 3
chr18_-_31109025 Show fit	0.01	ENSRNOT00000026381	Fchsd1 Links NCBI RGD Ensembl Show fit	FCH and double SH3 domains 1
chr7_-_143228060 Show fit	0.01	ENSRNOT00000088923 ENSRNOT00000012640	Krt75 Links NCBI RGD Ensembl Show fit	keratin 75
chr20_-_25826658 Show fit	0.01	ENSRNOT00000057950 ENSRNOT00000084660	Ctnna3 Links NCBI RGD Ensembl Show fit	catenin alpha 3
chr2_+_239415046 Show fit	0.01	ENSRNOT00000072196	Cxxc4 Links NCBI RGD Ensembl Show fit	CXXC finger protein 4
chr1_-_134871167 Show fit	0.01	ENSRNOT00000076300	Chd2 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 2
chr2_-_170301348 Show fit	0.01	ENSRNOT00000088131	Si Links NCBI RGD Ensembl Show fit	sucrase-isomaltase
chrM_+_7006 Show fit	0.01	ENSRNOT00000043693	Mt-co2 Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome c oxidase II
chr3_+_56766475 Show fit	0.01	ENSRNOT00000078819	Sp5 Links NCBI RGD Ensembl Show fit	Sp5 transcription factor
chr7_+_35773928 Show fit	0.01	ENSRNOT00000034639	Cep83 Links NCBI RGD Ensembl Show fit	centrosomal protein 83
chr18_+_81694808 Show fit	0.00	ENSRNOT00000020446	Cyb5a Links NCBI RGD Ensembl Show fit	cytochrome b5 type A
chr4_+_158088505 Show fit	0.00	ENSRNOT00000026643	Vwf Links NCBI RGD Ensembl Show fit	von Willebrand factor
chr8_-_40137390 Show fit	0.00	ENSRNOT00000042717	Panx3 Links NCBI RGD Ensembl Show fit	pannexin 3
chr10_+_53740841 Show fit	0.00	ENSRNOT00000004295	Myh2 Links NCBI RGD Ensembl Show fit	myosin heavy chain 2
chr13_+_49005405 Show fit	0.00	ENSRNOT00000092560 ENSRNOT00000076457	Lemd1 Links NCBI RGD Ensembl Show fit	LEM domain containing 1
chr4_-_4473307 Show fit	0.00	ENSRNOT00000045773	Dpp6 Links NCBI RGD Ensembl Show fit	dipeptidyl peptidase like 6
chr16_-_39476384 Show fit	0.00	ENSRNOT00000092968	Gpm6a Links NCBI RGD Ensembl Show fit	glycoprotein m6a
chr1_-_151106802 Show fit	0.00	ENSRNOT00000021971	Tyr Links NCBI RGD Ensembl Show fit	tyrosinase
chr6_-_71199110 Show fit	0.00	ENSRNOT00000081883	Prkd1 Links NCBI RGD Ensembl Show fit	protein kinase D1
chr5_-_12526962 Show fit	0.00	ENSRNOT00000092104	St18 Links NCBI RGD Ensembl Show fit	suppression of tumorigenicity 18
chr13_+_79378733 Show fit	0.00	ENSRNOT00000039221	Tnfsf18 Links NCBI RGD Ensembl Show fit	tumor necrosis factor superfamily member 18
chr1_-_101819478 Show fit	0.00	ENSRNOT00000056181	Grwd1 Links NCBI RGD Ensembl Show fit	glutamate-rich WD repeat containing 1
chr2_+_240642847 Show fit	0.00	ENSRNOT00000079694	Ube2d3 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2D 3
chr4_+_119225040 Show fit	0.00	ENSRNOT00000012365	Bmp10 Links NCBI RGD Ensembl Show fit	bone morphogenetic protein 10
chr11_-_60679555 Show fit	0.00	ENSRNOT00000059735	Ccdc80 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 80

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0014016	neuroblast differentiation(GO:0014016)
0.1	0.4	GO:0051970	negative regulation of transmission of nerve impulse(GO:0051970)
0.0	0.0	GO:0031583	phospholipase C-activating serotonin receptor signaling pathway(GO:0007208) phospholipase D-activating G-protein coupled receptor signaling pathway(GO:0031583)
0.0	0.1	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.0	0.1	GO:2000354	regulation of ovarian follicle development(GO:2000354)
0.0	0.1	GO:0042420	dopamine catabolic process(GO:0042420)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0034774	secretory granule lumen(GO:0034774)
0.0	0.1	GO:1990005	granular vesicle(GO:1990005)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen(GO:0016715)
0.0	0.4	GO:0005184	neuropeptide hormone activity(GO:0005184)
0.0	0.3	GO:0001222	transcription corepressor binding(GO:0001222)
0.0	0.0	GO:0071886	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding(GO:0071886)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME HORMONE LIGAND BINDING RECEPTORS	Genes involved in Hormone ligand-binding receptors