GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Msx2 Links NCBI RGD Ensembl	ENSRNOG00000018355	msh homeobox 2
Hoxd4 Links NCBI RGD Ensembl	ENSRNOG00000001578	homeo box D4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Msx2	rn6_v1_chr17_+_11683862_11683862	-0.41	4.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr13_-_86671515 Show fit	0.07	ENSRNOT00000082869	AABR07021704.1 Links NCBI RGD Ensembl Show fit
chr2_+_72006099 Show fit	0.06	ENSRNOT00000034044	Cdh12 Links NCBI RGD Ensembl Show fit	cadherin 12
chr6_-_76552559 Show fit	0.06	ENSRNOT00000065230	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr9_-_30844199 Show fit	0.06	ENSRNOT00000017169	Col19a1 Links NCBI RGD Ensembl Show fit	collagen type XIX alpha 1 chain
chr2_-_31753528 Show fit	0.05	ENSRNOT00000075057	Pik3r1 Links NCBI RGD Ensembl Show fit	phosphoinositide-3-kinase regulatory subunit 1
chr20_+_25990656 Show fit	0.05	ENSRNOT00000081254	Lrrtm3 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 3
chr19_+_25043680 Show fit	0.05	ENSRNOT00000043971	Adgrl1 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor L1
chr5_-_168734296 Show fit	0.05	ENSRNOT00000066120	Camta1 Links NCBI RGD Ensembl Show fit	calmodulin binding transcription activator 1
chrX_+_908044 Show fit	0.04	ENSRNOT00000072087	Zfp300 Links NCBI RGD Ensembl Show fit	zinc finger protein 300
chr15_+_56666012 Show fit	0.04	ENSRNOT00000013408	Htr2a Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 2A
chr1_-_166912524 Show fit	0.04	ENSRNOT00000092952	Inppl1 Links NCBI RGD Ensembl Show fit	inositol polyphosphate phosphatase-like 1
chr13_-_76049363 Show fit	0.04	ENSRNOT00000075865 ENSRNOT00000007455	Brinp2 Links NCBI RGD Ensembl Show fit	BMP/retinoic acid inducible neural specific 2
chr6_+_64789940 Show fit	0.03	ENSRNOT00000085979 ENSRNOT00000059739 ENSRNOT00000051908 ENSRNOT00000082793 ENSRNOT00000078583 ENSRNOT00000091677 ENSRNOT00000093241	Nrcam Links NCBI RGD Ensembl Show fit	neuronal cell adhesion molecule
chr6_+_27887797 Show fit	0.03	ENSRNOT00000015827	Asxl2 Links NCBI RGD Ensembl Show fit	additional sex combs like 2, transcriptional regulator
chr14_+_38192870 Show fit	0.03	ENSRNOT00000077080	Nfxl1 Links NCBI RGD Ensembl Show fit	nuclear transcription factor, X-box binding-like 1
chr9_+_52687868 Show fit	0.03	ENSRNOT00000083864	Wdr75 Links NCBI RGD Ensembl Show fit	WD repeat domain 75
chr19_-_22194740 Show fit	0.03	ENSRNOT00000086187	Phkb Links NCBI RGD Ensembl Show fit	phosphorylase kinase regulatory subunit beta
chr1_+_47032113 Show fit	0.03	ENSRNOT00000024412	Tulp4 Links NCBI RGD Ensembl Show fit	tubby like protein 4
chr11_-_29710849 Show fit	0.03	ENSRNOT00000029345	Krtap11-1 Links NCBI RGD Ensembl Show fit	keratin associated protein 11-1
chr3_-_25212049 Show fit	0.03	ENSRNOT00000040023	Lrp1b Links NCBI RGD Ensembl Show fit	LDL receptor related protein 1B
chr2_-_35104963 Show fit	0.03	ENSRNOT00000018058	Rgs7bp Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 7-binding protein
chr18_-_1828606 Show fit	0.03	ENSRNOT00000033312	Esco1 Links NCBI RGD Ensembl Show fit	establishment of sister chromatid cohesion N-acetyltransferase 1
chr2_+_127489771 Show fit	0.03	ENSRNOT00000093581	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr9_-_63641400 Show fit	0.03	ENSRNOT00000087684	Satb2 Links NCBI RGD Ensembl Show fit	SATB homeobox 2
chr15_-_71779033 Show fit	0.03	ENSRNOT00000017765	Pcdh20 Links NCBI RGD Ensembl Show fit	protocadherin 20
chrX_+_84064427 Show fit	0.03	ENSRNOT00000046364	Zfp711 Links NCBI RGD Ensembl Show fit	zinc finger protein 711
chr3_-_90751055 Show fit	0.02	ENSRNOT00000040741	LOC499843 Links NCBI RGD Ensembl Show fit	LRRGT00091
chr2_-_33025271 Show fit	0.02	ENSRNOT00000074941	NEWGENE_1310139 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr13_+_46169963 Show fit	0.02	ENSRNOT00000005212	Thsd7b Links NCBI RGD Ensembl Show fit	thrombospondin type 1 domain containing 7B
chr11_-_90406797 Show fit	0.02	ENSRNOT00000073049	Snai2 Links NCBI RGD Ensembl Show fit	snail family transcriptional repressor 2
chr13_+_90533365 Show fit	0.02	ENSRNOT00000082469	Dcaf8 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 8
chr8_+_70317586 Show fit	0.02	ENSRNOT00000016260	Dennd4a Links NCBI RGD Ensembl Show fit	DENN domain containing 4A
chr7_+_122818975 Show fit	0.02	ENSRNOT00000000206	Ep300 Links NCBI RGD Ensembl Show fit	E1A binding protein p300
chr12_-_35979193 Show fit	0.02	ENSRNOT00000071104	Tmem132b Links NCBI RGD Ensembl Show fit	transmembrane protein 132B
chr2_-_30634243 Show fit	0.02	ENSRNOT00000077537	Marveld2 Links NCBI RGD Ensembl Show fit	MARVEL domain containing 2
chr5_+_104698040 Show fit	0.02	ENSRNOT00000009127	Adamtsl1 Links NCBI RGD Ensembl Show fit	ADAMTS-like 1
chr20_+_27975549 Show fit	0.02	ENSRNOT00000092075	Lims1 Links NCBI RGD Ensembl Show fit	LIM zinc finger domain containing 1
chr14_+_48768537 Show fit	0.02	ENSRNOT00000082599	Arap2 Links NCBI RGD Ensembl Show fit	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr7_+_42304534 Show fit	0.02	ENSRNOT00000085097	Kitlg Links NCBI RGD Ensembl Show fit	KIT ligand
chr2_+_196013799 Show fit	0.02	ENSRNOT00000084023	Pogz Links NCBI RGD Ensembl Show fit	pogo transposable element with ZNF domain
chr5_-_154363329 Show fit	0.02	ENSRNOT00000064596	Eloa Links NCBI RGD Ensembl Show fit	elongin A
chr16_-_54137660 Show fit	0.02	ENSRNOT00000085435	Pcm1 Links NCBI RGD Ensembl Show fit	pericentriolar material 1
chr19_+_32308236 Show fit	0.02	ENSRNOT00000015508	Mmaa Links NCBI RGD Ensembl Show fit	methylmalonic aciduria (cobalamin deficiency) cblA type
chr2_-_196377883 Show fit	0.02	ENSRNOT00000028661	Gabpb2 Links NCBI RGD Ensembl Show fit	GA binding protein transcription factor, beta subunit 2
chr19_+_43163129 Show fit	0.01	ENSRNOT00000073721	Clec18a Links NCBI RGD Ensembl Show fit	C-type lectin domain family 18, member A
chr8_-_96266342 Show fit	0.01	ENSRNOT00000078891	Syncrip Links NCBI RGD Ensembl Show fit	synaptotagmin binding, cytoplasmic RNA interacting protein
chr6_-_94834908 Show fit	0.01	ENSRNOT00000006284	L3hypdh Links NCBI RGD Ensembl Show fit	trans-L-3-hydroxyproline dehydratase
chr6_+_69971227 Show fit	0.01	ENSRNOT00000075349	Foxg1 Links NCBI RGD Ensembl Show fit	forkhead box G1
chr10_-_90940118 Show fit	0.01	ENSRNOT00000093143	Eftud2 Links NCBI RGD Ensembl Show fit	elongation factor Tu GTP binding domain containing 2
chr11_-_782954 Show fit	0.01	ENSRNOT00000040065	Epha3 Links NCBI RGD Ensembl Show fit	Eph receptor A3
chr3_-_52447622 Show fit	0.01	ENSRNOT00000083552	Scn1a Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel alpha subunit 1
chr5_-_48436531 Show fit	0.01	ENSRNOT00000060914	Pm20d2 Links NCBI RGD Ensembl Show fit	peptidase M20 domain containing 2
chr17_-_53713408 Show fit	0.01	ENSRNOT00000022445	LOC100912163 Links NCBI RGD Ensembl Show fit	AT-rich interactive domain-containing protein 4B-like
chrX_-_106607352 Show fit	0.01	ENSRNOT00000082858	AABR07040624.1 Links NCBI RGD Ensembl Show fit
chrM_+_8599 Show fit	0.01	ENSRNOT00000049683	Mt-cox3 Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome C oxidase III
chr14_-_45859908 Show fit	0.01	ENSRNOT00000086994	Pgm2 Links NCBI RGD Ensembl Show fit	phosphoglucomutase 2
chr2_-_181531978 Show fit	0.01	ENSRNOT00000072029	Npy2r Links NCBI RGD Ensembl Show fit	neuropeptide Y receptor Y2
chr4_-_129619142 Show fit	0.01	ENSRNOT00000047453	Lmod3 Links NCBI RGD Ensembl Show fit	leiomodin 3
chr11_+_61605937 Show fit	0.01	ENSRNOT00000093455 ENSRNOT00000093242	Gramd1c Links NCBI RGD Ensembl Show fit	GRAM domain containing 1C
chr2_+_165805144 Show fit	0.01	ENSRNOT00000073716	Rabif Links NCBI RGD Ensembl Show fit	RAB interacting factor
chr2_-_210766501 Show fit	0.01	ENSRNOT00000025800	Gstm3 Links NCBI RGD Ensembl Show fit	glutathione S-transferase mu 3
chr20_+_9948908 Show fit	0.01	ENSRNOT00000001541	Ubash3a Links NCBI RGD Ensembl Show fit	ubiquitin associated and SH3 domain containing, A
chr2_-_219262901 Show fit	0.00	ENSRNOT00000037068	Gpr88 Links NCBI RGD Ensembl Show fit	G-protein coupled receptor 88
chr10_-_87521514 Show fit	0.00	ENSRNOT00000084668 ENSRNOT00000071705	Krtap2-4l Links NCBI RGD Ensembl Show fit	keratin associated protein 2-4-like
chr5_-_12172009 Show fit	0.00	ENSRNOT00000061903	Pcmtd1 Links NCBI RGD Ensembl Show fit	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
chr16_+_50049828 Show fit	0.00	ENSRNOT00000034448	Fam149a Links NCBI RGD Ensembl Show fit	family with sequence similarity 149, member A
chr2_+_54466280 Show fit	0.00	ENSRNOT00000033112	C6 Links NCBI RGD Ensembl Show fit	complement C6
chrM_+_7006 Show fit	0.00	ENSRNOT00000043693	Mt-co2 Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome c oxidase II
chr10_+_65733991 Show fit	0.00	ENSRNOT00000013698	Slc46a1 Links NCBI RGD Ensembl Show fit	solute carrier family 46 member 1
chrM_+_7919 Show fit	0.00	ENSRNOT00000046108	Mt-atp6 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 6
chr1_+_22364551 Show fit	0.00	ENSRNOT00000043157	LOC108348200 Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8a
chr16_+_61926586 Show fit	0.00	ENSRNOT00000058884	AABR07026059.1 Links NCBI RGD Ensembl Show fit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0007208	phospholipase C-activating serotonin receptor signaling pathway(GO:0007208)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005943	phosphatidylinositol 3-kinase complex, class IA(GO:0005943)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0071886	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding(GO:0071886)