GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nf1x	rn6_v1_chr19_-_25914689_25914696	-0.51	3.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_213595240 Show fit	0.09	ENSRNOT00000017137	Scgb1c1 Links NCBI RGD Ensembl Show fit	secretoglobin, family 1C, member 1
chr7_-_28711761 Show fit	0.09	ENSRNOT00000006249	Parpbp Links NCBI RGD Ensembl Show fit	PARP1 binding protein
chr17_-_389967 Show fit	0.07	ENSRNOT00000023865	Fbp2 Links NCBI RGD Ensembl Show fit	fructose-bisphosphatase 2
chr11_+_45888221 Show fit	0.07	ENSRNOT00000071932 ENSRNOT00000066008 ENSRNOT00000060802	Lnp1 Links NCBI RGD Ensembl Show fit	leukemia NUP98 fusion partner 1
chr13_-_82005741 Show fit	0.07	ENSRNOT00000076404	Mettl11b Links NCBI RGD Ensembl Show fit	methyltransferase like 11B
chr6_-_77421286 Show fit	0.06	ENSRNOT00000011453	Nkx2-1 Links NCBI RGD Ensembl Show fit	NK2 homeobox 1
chr17_-_51912496 Show fit	0.06	ENSRNOT00000019272	Inhba Links NCBI RGD Ensembl Show fit	inhibin beta A subunit
chr14_+_24129592 Show fit	0.06	ENSRNOT00000040647	LOC689899 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L23a
chr16_+_72401887 Show fit	0.05	ENSRNOT00000074449	LOC100910163 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100910163
chr5_-_2803855 Show fit	0.05	ENSRNOT00000009490	LOC297756 Links NCBI RGD Ensembl Show fit	ribosomal protein S8-like
chr4_+_165732643 Show fit	0.05	ENSRNOT00000034403	LOC690326 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC690326
chr1_-_82279145 Show fit	0.05	ENSRNOT00000057433	Cxcl17 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine ligand 17
chr1_-_103323476 Show fit	0.05	ENSRNOT00000019051	Mrgprx3 Links NCBI RGD Ensembl Show fit	MAS related GPR family member X3
chr6_+_135139292 Show fit	0.04	ENSRNOT00000043508	Rpl35al1 Links NCBI RGD Ensembl Show fit	ribosomal protein L35a-like 1
chr2_-_14701903 Show fit	0.04	ENSRNOT00000051895	Cox7c Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 7C
chr20_+_40769586 Show fit	0.04	ENSRNOT00000001079	Fabp7 Links NCBI RGD Ensembl Show fit	fatty acid binding protein 7
chr13_-_50549981 Show fit	0.04	ENSRNOT00000003918 ENSRNOT00000080486	Golt1a Links NCBI RGD Ensembl Show fit	golgi transport 1A
chr13_-_82006005 Show fit	0.04	ENSRNOT00000039581	Mettl11b Links NCBI RGD Ensembl Show fit	methyltransferase like 11B
chr14_-_19191863 Show fit	0.04	ENSRNOT00000003921	Alb Links NCBI RGD Ensembl Show fit	albumin
chr1_+_80256973 Show fit	0.03	ENSRNOT00000024113	Ercc1 Links NCBI RGD Ensembl Show fit	ERCC excision repair 1, endonuclease non-catalytic subunit
chr5_+_164923302 Show fit	0.03	ENSRNOT00000042285	LOC108349682 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L35a
chr14_+_104452917 Show fit	0.03	ENSRNOT00000050489	LOC682793 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L38
chr4_+_7076759 Show fit	0.03	ENSRNOT00000066598	Smarcd3 Links NCBI RGD Ensembl Show fit	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
chrX_-_72078551 Show fit	0.03	ENSRNOT00000076978	Rps4x Links NCBI RGD Ensembl Show fit	ribosomal protein S4, X-linked
chr1_+_22332090 Show fit	0.03	ENSRNOT00000091252	AABR07000663.1 Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8c (Taar8c), mRNA
chr2_+_233602732 Show fit	0.03	ENSRNOT00000044232	Pitx2 Links NCBI RGD Ensembl Show fit	paired-like homeodomain 2
chr13_-_50497466 Show fit	0.03	ENSRNOT00000076072	Etnk2 Links NCBI RGD Ensembl Show fit	ethanolamine kinase 2
chr10_+_49259194 Show fit	0.03	ENSRNOT00000091100 ENSRNOT00000004390	Fbxw10 Links NCBI RGD Ensembl Show fit	F-box and WD repeat domain containing 10
chr20_+_27592379 Show fit	0.03	ENSRNOT00000047000	Trappc3l Links NCBI RGD Ensembl Show fit	trafficking protein particle complex 3-like
chr2_+_188528979 Show fit	0.03	ENSRNOT00000087934	Thbs3 Links NCBI RGD Ensembl Show fit	thrombospondin 3
chr10_-_88036040 Show fit	0.03	ENSRNOT00000018851	Krt13 Links NCBI RGD Ensembl Show fit	keratin 13
chrX_+_77278240 Show fit	0.03	ENSRNOT00000085653	Pgk1 Links NCBI RGD Ensembl Show fit	phosphoglycerate kinase 1
chr16_+_2537248 Show fit	0.03	ENSRNOT00000017995	Asb14 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box-containing 14
chr16_+_26859397 Show fit	0.03	ENSRNOT00000044171	Msmo1 Links NCBI RGD Ensembl Show fit	methylsterol monooxygenase 1
chr6_-_77848434 Show fit	0.02	ENSRNOT00000034342	Slc25a21 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 21
chr7_+_2459141 Show fit	0.02	ENSRNOT00000075681	Naca Links NCBI RGD Ensembl Show fit	nascent polypeptide-associated complex alpha subunit
chr10_+_53740841 Show fit	0.02	ENSRNOT00000004295	Myh2 Links NCBI RGD Ensembl Show fit	myosin heavy chain 2
chr3_-_51297852 Show fit	0.02	ENSRNOT00000001607	Cobll1 Links NCBI RGD Ensembl Show fit	cordon-bleu WH2 repeat protein-like 1
chr2_-_183128932 Show fit	0.02	ENSRNOT00000031179	Mnd1 Links NCBI RGD Ensembl Show fit	meiotic nuclear divisions 1
chr8_-_62399648 Show fit	0.02	ENSRNOT00000026192	Lman1l Links NCBI RGD Ensembl Show fit	lectin, mannose-binding, 1 like
chrX_-_152781574 Show fit	0.02	ENSRNOT00000007487	RGD1566078 Links NCBI RGD Ensembl Show fit	similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1)
chr19_-_15733412 Show fit	0.02	ENSRNOT00000014831	Irx6 Links NCBI RGD Ensembl Show fit	iroquois homeobox 6
chr14_-_45376127 Show fit	0.02	ENSRNOT00000059247	AABR07015015.2 Links NCBI RGD Ensembl Show fit
chr10_+_34578356 Show fit	0.02	ENSRNOT00000047454	Olr1389 Links NCBI RGD Ensembl Show fit	olfactory receptor 1389
chr14_+_22806132 Show fit	0.02	ENSRNOT00000002728	Ugt2b10 Links NCBI RGD Ensembl Show fit	UDP glucuronosyltransferase 2 family, polypeptide B10
chr1_-_16687817 Show fit	0.02	ENSRNOT00000091376 ENSRNOT00000081620	Myb Links NCBI RGD Ensembl Show fit	MYB proto-oncogene, transcription factor
chr20_-_1099336 Show fit	0.02	ENSRNOT00000071766	LOC100362856 Links NCBI RGD Ensembl Show fit	olfactory receptor-like protein-like
chr2_-_211207465 Show fit	0.02	ENSRNOT00000027263	Celsr2 Links NCBI RGD Ensembl Show fit	cadherin, EGF LAG seven-pass G-type receptor 2
chr17_+_21600432 Show fit	0.02	ENSRNOT00000060340	RGD1562963 Links NCBI RGD Ensembl Show fit	similar to chromosome 6 open reading frame 52
chr7_-_68549763 Show fit	0.02	ENSRNOT00000078014	Slc16a7 Links NCBI RGD Ensembl Show fit	solute carrier family 16 member 7
chr7_-_30105132 Show fit	0.02	ENSRNOT00000091227	Nr1h4 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 1, group H, member 4
chr10_-_56935141 Show fit	0.02	ENSRNOT00000025910	Alox12e Links NCBI RGD Ensembl Show fit	arachidonate 12-lipoxygenase, epidermal
chr4_+_35279063 Show fit	0.02	ENSRNOT00000011833	Nxph1 Links NCBI RGD Ensembl Show fit	neurexophilin 1
chr11_+_13499164 Show fit	0.02	ENSRNOT00000013159	LOC680121 Links NCBI RGD Ensembl Show fit	similar to heat shock protein 8
chr1_+_170147300 Show fit	0.02	ENSRNOT00000048075	Olr200 Links NCBI RGD Ensembl Show fit	olfactory receptor 200
chr9_+_67699379 Show fit	0.02	ENSRNOT00000091237 ENSRNOT00000088183	Ctla4 Links NCBI RGD Ensembl Show fit	cytotoxic T-lymphocyte-associated protein 4
chr4_-_101393329 Show fit	0.02	ENSRNOT00000007636	RGD1562515 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931417E11
chr11_-_17340373 Show fit	0.02	ENSRNOT00000089762	AABR07033324.1 Links NCBI RGD Ensembl Show fit
chr17_-_21705773 Show fit	0.02	ENSRNOT00000078010	Gcnt2 Links NCBI RGD Ensembl Show fit	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
chr11_-_29710849 Show fit	0.02	ENSRNOT00000029345	Krtap11-1 Links NCBI RGD Ensembl Show fit	keratin associated protein 11-1
chr5_-_99033107 Show fit	0.02	ENSRNOT00000041306	Hspa8 Links NCBI RGD Ensembl Show fit	heat shock protein family A (Hsp70) member 8
chr5_-_102743417 Show fit	0.02	ENSRNOT00000067389	Bnc2 Links NCBI RGD Ensembl Show fit	basonuclin 2
chr6_+_59757397 Show fit	0.02	ENSRNOT00000047001	AABR07064000.1 Links NCBI RGD Ensembl Show fit
chr8_+_119214541 Show fit	0.02	ENSRNOT00000050117	RGD1564138 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L29 (P23)
chr5_-_102786331 Show fit	0.02	ENSRNOT00000086635	Bnc2 Links NCBI RGD Ensembl Show fit	basonuclin 2
chr5_-_64850427 Show fit	0.01	ENSRNOT00000008883	Tmem246 Links NCBI RGD Ensembl Show fit	transmembrane protein 246
chrX_-_136150209 Show fit	0.01	ENSRNOT00000048498	Enox2 Links NCBI RGD Ensembl Show fit	ecto-NOX disulfide-thiol exchanger 2
chr1_-_22661377 Show fit	0.01	ENSRNOT00000021896	Vnn3 Links NCBI RGD Ensembl Show fit	vanin 3
chrX_+_53053609 Show fit	0.01	ENSRNOT00000058357	Dmd Links NCBI RGD Ensembl Show fit	dystrophin
chr14_+_7113544 Show fit	0.01	ENSRNOT00000038188	Hsd17b13 Links NCBI RGD Ensembl Show fit	hydroxysteroid (17-beta) dehydrogenase 13
chr2_+_69415057 Show fit	0.01	ENSRNOT00000013152	Cdh10 Links NCBI RGD Ensembl Show fit	cadherin 10
chr10_+_53778662 Show fit	0.01	ENSRNOT00000045718	Myh2 Links NCBI RGD Ensembl Show fit	myosin heavy chain 2
chr6_+_147315328 Show fit	0.01	ENSRNOT00000056654	Macc1 Links NCBI RGD Ensembl Show fit	MACC1, MET transcriptional regulator
chr2_-_45518502 Show fit	0.01	ENSRNOT00000014627	Hspb3 Links NCBI RGD Ensembl Show fit	heat shock protein family B (small) member 3
chr16_+_6962722 Show fit	0.01	ENSRNOT00000023330	Mustn1 Links NCBI RGD Ensembl Show fit	musculoskeletal, embryonic nuclear protein 1
chr4_-_165541314 Show fit	0.01	ENSRNOT00000013833	Styk1 Links NCBI RGD Ensembl Show fit	serine/threonine/tyrosine kinase 1
chr8_+_91820783 Show fit	0.01	ENSRNOT00000043351	RGD1560917 Links NCBI RGD Ensembl Show fit	similar to mitochondrial ribosomal protein L41
chr17_+_37675569 Show fit	0.01	ENSRNOT00000032995	RGD1563300 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L29 (P23)
chr4_-_71227872 Show fit	0.01	ENSRNOT00000050392	Tcaf2 Links NCBI RGD Ensembl Show fit	TRPM8 channel-associated factor 2
chr1_+_282568287 Show fit	0.01	ENSRNOT00000015997	Ces2i Links NCBI RGD Ensembl Show fit	carboxylesterase 2I
chr10_-_78690857 Show fit	0.01	ENSRNOT00000089255	LOC303448 Links NCBI RGD Ensembl Show fit	similar to glyceraldehyde-3-phosphate dehydrogenase
chr1_+_225048149 Show fit	0.01	ENSRNOT00000036454	Lrrn4cl Links NCBI RGD Ensembl Show fit	LRRN4 C-terminal like
chr1_+_84067938 Show fit	0.01	ENSRNOT00000057213	Numbl Links NCBI RGD Ensembl Show fit	NUMB-like, endocytic adaptor protein
chr9_-_94495333 Show fit	0.01	ENSRNOT00000021507	Kcnj13 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily J member 13
chr3_+_91870208 Show fit	0.01	ENSRNOT00000040249	Rpl21 Links NCBI RGD Ensembl Show fit	ribosomal protein L21
chr3_-_2181962 Show fit	0.01	ENSRNOT00000044802	Mrpl41 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L41
chrX_+_124631881 Show fit	0.01	ENSRNOT00000009329	Atp1b4 Links NCBI RGD Ensembl Show fit	ATPase Na+/K+ transporting family member beta 4
chr10_-_87335823 Show fit	0.01	ENSRNOT00000079297	Krt12 Links NCBI RGD Ensembl Show fit	keratin 12
chr1_+_41323194 Show fit	0.01	ENSRNOT00000026350	Esr1 Links NCBI RGD Ensembl Show fit	estrogen receptor 1
chr4_+_170820594 Show fit	0.01	ENSRNOT00000032568	LOC500354 Links NCBI RGD Ensembl Show fit	similar to C030030A07Rik protein
chr2_+_199199845 Show fit	0.01	ENSRNOT00000020932	LOC100909441 Links NCBI RGD Ensembl Show fit	tubulin alpha-1C chain-like
chr19_-_12942943 Show fit	0.01	ENSRNOT00000064105 ENSRNOT00000090886	Large1 Links NCBI RGD Ensembl Show fit	LARGE xylosyl- and glucuronyltransferase 1
chr16_-_39476384 Show fit	0.01	ENSRNOT00000092968	Gpm6a Links NCBI RGD Ensembl Show fit	glycoprotein m6a
chr11_-_71284939 Show fit	0.01	ENSRNOT00000002421	AABR07034428.1 Links NCBI RGD Ensembl Show fit
chr14_+_107268128 Show fit	0.01	ENSRNOT00000012224	Tmem17 Links NCBI RGD Ensembl Show fit	transmembrane protein 17
chrX_+_134940615 Show fit	0.01	ENSRNOT00000005604	Xpnpep2 Links NCBI RGD Ensembl Show fit	X-prolyl aminopeptidase 2
chr6_-_109205004 Show fit	0.01	ENSRNOT00000010512	Tmed10 Links NCBI RGD Ensembl Show fit	transmembrane p24 trafficking protein 10
chr6_-_21135880 Show fit	0.01	ENSRNOT00000051239	Rasgrp3 Links NCBI RGD Ensembl Show fit	RAS guanyl releasing protein 3
chr1_-_162385575 Show fit	0.01	ENSRNOT00000016540	Thrsp Links NCBI RGD Ensembl Show fit	thyroid hormone responsive
chr3_-_11417546 Show fit	0.00	ENSRNOT00000018776	Lcn2 Links NCBI RGD Ensembl Show fit	lipocalin 2
chr13_+_89622632 Show fit	0.00	ENSRNOT00000004713	Adamts4 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 4
chr17_-_15511972 Show fit	0.00	ENSRNOT00000074041	Aspnl1 Links NCBI RGD Ensembl Show fit	asporin-like 1
chr1_-_211196868 Show fit	0.00	ENSRNOT00000022714	Mapk1ip1 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 1 interacting protein 1
chr1_-_48565711 Show fit	0.00	ENSRNOT00000023387	AABR07001512.1 Links NCBI RGD Ensembl Show fit
chr3_-_134696654 Show fit	0.00	ENSRNOT00000006454	Flrt3 Links NCBI RGD Ensembl Show fit	fibronectin leucine rich transmembrane protein 3
chr10_-_43512287 Show fit	0.00	ENSRNOT00000036481	Faxdc2 Links NCBI RGD Ensembl Show fit	fatty acid hydroxylase domain containing 2
chr3_-_155192806 Show fit	0.00	ENSRNOT00000051343	RGD1563145 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L13
chr8_-_84522588 Show fit	0.00	ENSRNOT00000076213	Mlip Links NCBI RGD Ensembl Show fit	muscular LMNA-interacting protein
chr7_-_143523457 Show fit	0.00	ENSRNOT00000012943 ENSRNOT00000082264	Krt4 Links NCBI RGD Ensembl Show fit	keratin 4
chrX_-_63807810 Show fit	0.00	ENSRNOT00000084632	Maged1 Links NCBI RGD Ensembl Show fit	MAGE family member D1
chrX_-_32095867 Show fit	0.00	ENSRNOT00000049947 ENSRNOT00000080730	Ace2 Links NCBI RGD Ensembl Show fit	angiotensin I converting enzyme 2
chr4_-_144318580 Show fit	0.00	ENSRNOT00000007591	Ssuh2 Links NCBI RGD Ensembl Show fit	ssu-2 homolog
chr13_-_90602365 Show fit	0.00	ENSRNOT00000009344	Casq1 Links NCBI RGD Ensembl Show fit	calsequestrin 1
chr5_-_93244202 Show fit	0.00	ENSRNOT00000075474	Ptprd Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, receptor type, D

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0006480	N-terminal protein amino acid methylation(GO:0006480)
0.0	0.1	GO:0046351	disaccharide biosynthetic process(GO:0046351)
0.0	0.1	GO:0060279	positive regulation of ovulation(GO:0060279)
0.0	0.0	GO:0000720	pyrimidine dimer repair by nucleotide-excision repair(GO:0000720) nucleotide-excision repair, DNA incision, 5'-to lesion(GO:0006296)
0.0	0.1	GO:0060486	globus pallidus development(GO:0021759) Clara cell differentiation(GO:0060486)
0.0	0.0	GO:0003219	cardiac right ventricle formation(GO:0003219)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0043511	inhibin complex(GO:0043511)
0.0	0.0	GO:0000110	nucleotide-excision repair factor 1 complex(GO:0000110)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0071885	N-terminal protein N-methyltransferase activity(GO:0071885)
0.0	0.1	GO:0070699	type II activin receptor binding(GO:0070699)