GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nfkb2 Links NCBI RGD Ensembl	ENSRNOG00000019311	nuclear factor kappa B subunit 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nfkb2	rn6_v1_chr1_+_266053002_266053002	0.13	8.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_97582188 Show fit	0.10	ENSRNOT00000005076	Rgs9 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 9
chr7_+_70364813 Show fit	0.07	ENSRNOT00000084012 ENSRNOT00000031230	Agap2 Links NCBI RGD Ensembl Show fit	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
chr1_+_163445527 Show fit	0.04	ENSRNOT00000020520	Lrrc32 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 32
chrX_-_68562301 Show fit	0.04	ENSRNOT00000076720	Ophn1 Links NCBI RGD Ensembl Show fit	oligophrenin 1
chr10_-_65200109 Show fit	0.04	ENSRNOT00000030501	Nufip2 Links NCBI RGD Ensembl Show fit	NUFIP2, FMR1 interacting protein 2
chr5_-_137372524 Show fit	0.04	ENSRNOT00000009061	Tmem125 Links NCBI RGD Ensembl Show fit	transmembrane protein 125
chr15_-_28044210 Show fit	0.04	ENSRNOT00000033809	Rnase1l1 Links NCBI RGD Ensembl Show fit	ribonuclease, RNase A family, 1-like 1 (pancreatic)
chr10_+_75055020 Show fit	0.04	ENSRNOT00000010755	Tspoap1 Links NCBI RGD Ensembl Show fit	TSPO associated protein 1
chr1_+_221710670 Show fit	0.03	ENSRNOT00000064798	Map4k2 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase kinase kinase kinase 2
chr12_-_38638536 Show fit	0.03	ENSRNOT00000001690	Mlxip Links NCBI RGD Ensembl Show fit	MLX interacting protein
chr13_+_52887649 Show fit	0.03	ENSRNOT00000048033	Ascl5 Links NCBI RGD Ensembl Show fit	achaete-scute family bHLH transcription factor 5
chr9_+_82053581 Show fit	0.03	ENSRNOT00000086375	Wnt10a Links NCBI RGD Ensembl Show fit	wingless-type MMTV integration site family, member 10A
chr15_-_77736892 Show fit	0.02	ENSRNOT00000057924	Pcdh9 Links NCBI RGD Ensembl Show fit	protocadherin 9
chr11_-_71108184 Show fit	0.02	ENSRNOT00000051989 ENSRNOT00000073865 ENSRNOT00000063883	Lrch3 Links NCBI RGD Ensembl Show fit	leucine rich repeats and calponin homology domain containing 3
chr2_-_31826867 Show fit	0.02	ENSRNOT00000025687	Pik3r1 Links NCBI RGD Ensembl Show fit	phosphoinositide-3-kinase regulatory subunit 1
chr7_-_117732339 Show fit	0.02	ENSRNOT00000092917 ENSRNOT00000020696	Foxh1 Links NCBI RGD Ensembl Show fit	forkhead box H1
chr3_+_92403582 Show fit	0.02	ENSRNOT00000064282	Pamr1 Links NCBI RGD Ensembl Show fit	peptidase domain containing associated with muscle regeneration 1
chr3_+_59408546 Show fit	0.02	ENSRNOT00000031418	AABR07052523.1 Links NCBI RGD Ensembl Show fit
chr3_-_105214989 Show fit	0.02	ENSRNOT00000037895	Grem1 Links NCBI RGD Ensembl Show fit	gremlin 1, DAN family BMP antagonist
chr5_+_14415606 Show fit	0.02	ENSRNOT00000089273	Rgs20 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 20
chr20_+_4852671 Show fit	0.02	ENSRNOT00000001111	Lta Links NCBI RGD Ensembl Show fit	lymphotoxin alpha
chr10_-_74769637 Show fit	0.02	ENSRNOT00000008889	LOC102555183 Links NCBI RGD Ensembl Show fit	zinc finger protein OZF-like
chr19_+_57556694 Show fit	0.02	ENSRNOT00000032359	Trim67 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 67
chr1_+_90919076 Show fit	0.02	ENSRNOT00000081362	LOC108348197 Links NCBI RGD Ensembl Show fit	calpain small subunit 1-like
chr5_+_14415841 Show fit	0.02	ENSRNOT00000010682	Rgs20 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 20
chr15_+_62406873 Show fit	0.02	ENSRNOT00000047572	Olfm4 Links NCBI RGD Ensembl Show fit	olfactomedin 4
chr1_-_166413564 Show fit	0.02	ENSRNOT00000026286	Atg16l2 Links NCBI RGD Ensembl Show fit	autophagy related 16-like 2
chr10_-_56412544 Show fit	0.02	ENSRNOT00000020578	Tmem102 Links NCBI RGD Ensembl Show fit	transmembrane protein 102
chr1_+_80087684 Show fit	0.01	ENSRNOT00000041215	Eml2 Links NCBI RGD Ensembl Show fit	echinoderm microtubule associated protein like 2
chr6_+_52663112 Show fit	0.01	ENSRNOT00000013842	Atxn7l1 Links NCBI RGD Ensembl Show fit	ataxin 7-like 1
chr1_-_15301998 Show fit	0.01	ENSRNOT00000016400	Slc35d3 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member D3
chr15_+_42489377 Show fit	0.01	ENSRNOT00000064306	Pbk Links NCBI RGD Ensembl Show fit	PDZ binding kinase
chr9_+_17705212 Show fit	0.01	ENSRNOT00000026728	Tmem63b Links NCBI RGD Ensembl Show fit	transmembrane protein 63B
chr5_+_142986526 Show fit	0.01	ENSRNOT00000012811	Rspo1 Links NCBI RGD Ensembl Show fit	R-spondin 1
chr20_+_4852496 Show fit	0.01	ENSRNOT00000088936	Lta Links NCBI RGD Ensembl Show fit	lymphotoxin alpha
chr13_+_49870976 Show fit	0.01	ENSRNOT00000090170	Pik3c2b Links NCBI RGD Ensembl Show fit	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
chr20_-_3299420 Show fit	0.01	ENSRNOT00000090999	Gnl1 Links NCBI RGD Ensembl Show fit	G protein nucleolar 1
chr10_+_86514830 Show fit	0.01	ENSRNOT00000048647 ENSRNOT00000009535	Zpbp2 Links NCBI RGD Ensembl Show fit	zona pellucida binding protein 2
chr1_-_167347490 Show fit	0.01	ENSRNOT00000076499	Rhog Links NCBI RGD Ensembl Show fit	ras homolog family member G
chr1_-_170578693 Show fit	0.01	ENSRNOT00000025651	Rrp8 Links NCBI RGD Ensembl Show fit	ribosomal RNA processing 8, methyltransferase, homolog (yeast)
chr2_+_188748359 Show fit	0.01	ENSRNOT00000028038	Shc1 Links NCBI RGD Ensembl Show fit	SHC adaptor protein 1
chr9_-_11114843 Show fit	0.01	ENSRNOT00000072031	Ebi3 Links NCBI RGD Ensembl Show fit	Epstein-Barr virus induced 3
chr1_-_100537377 Show fit	0.01	ENSRNOT00000026599	Spib Links NCBI RGD Ensembl Show fit	Spi-B transcription factor
chr7_+_133856101 Show fit	0.01	ENSRNOT00000038686	Pdzrn4 Links NCBI RGD Ensembl Show fit	PDZ domain containing RING finger 4
chr4_+_117215064 Show fit	0.01	ENSRNOT00000020909	Smyd5 Links NCBI RGD Ensembl Show fit	SMYD family member 5
chr1_-_266086299 Show fit	0.01	ENSRNOT00000026609	Cuedc2 Links NCBI RGD Ensembl Show fit	CUE domain containing 2
chr13_+_111870121 Show fit	0.01	ENSRNOT00000007333	Irf6 Links NCBI RGD Ensembl Show fit	interferon regulatory factor 6
chr1_-_197590277 Show fit	0.01	ENSRNOT00000022502 ENSRNOT00000043433	Xpo6 Links NCBI RGD Ensembl Show fit	exportin 6
chr5_-_146973932 Show fit	0.01	ENSRNOT00000007761	Zfp362 Links NCBI RGD Ensembl Show fit	zinc finger protein 362
chr4_-_77510202 Show fit	0.01	ENSRNOT00000038550	Zfp786 Links NCBI RGD Ensembl Show fit	zinc finger protein 786
chr6_-_24985716 Show fit	0.01	ENSRNOT00000010613	Galnt14 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 14
chr10_-_56624526 Show fit	0.01	ENSRNOT00000024973	Acadvl Links NCBI RGD Ensembl Show fit	acyl-CoA dehydrogenase, very long chain
chr4_+_155653718 Show fit	0.01	ENSRNOT00000065419	Foxj2 Links NCBI RGD Ensembl Show fit	forkhead box J2
chr10_-_72188164 Show fit	0.01	ENSRNOT00000085728 ENSRNOT00000042506	Ggnbp2 Links NCBI RGD Ensembl Show fit	gametogenetin binding protein 2
chr10_-_109630005 Show fit	0.01	ENSRNOT00000075206	Oxld1 Links NCBI RGD Ensembl Show fit	oxidoreductase-like domain containing 1
chr4_+_171250818 Show fit	0.01	ENSRNOT00000040576	Ptpro Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, receptor type, O
chr20_-_3299580 Show fit	0.00	ENSRNOT00000050373	Gnl1 Links NCBI RGD Ensembl Show fit	G protein nucleolar 1
chr20_-_3298835 Show fit	0.00	ENSRNOT00000083617	Gnl1 Links NCBI RGD Ensembl Show fit	G protein nucleolar 1
chr9_+_71230108 Show fit	0.00	ENSRNOT00000018326	Creb1 Links NCBI RGD Ensembl Show fit	cAMP responsive element binding protein 1
chr4_+_71675383 Show fit	0.00	ENSRNOT00000051265	Clcn1 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 1
chr8_-_127782070 Show fit	0.00	ENSRNOT00000045493	Plcd1 Links NCBI RGD Ensembl Show fit	phospholipase C, delta 1
chr4_-_115157263 Show fit	0.00	ENSRNOT00000015296	Tet3 Links NCBI RGD Ensembl Show fit	tet methylcytosine dioxygenase 3
chr1_-_101046208 Show fit	0.00	ENSRNOT00000091711	Prr12 Links NCBI RGD Ensembl Show fit	proline rich 12
chr2_+_199831990 Show fit	0.00	ENSRNOT00000063783 ENSRNOT00000086588	Prkab2 Links NCBI RGD Ensembl Show fit	protein kinase AMP-activated non-catalytic subunit beta 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0002874	regulation of chronic inflammatory response to antigenic stimulus(GO:0002874) positive regulation of chronic inflammatory response to antigenic stimulus(GO:0002876)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0030156	benzodiazepine receptor binding(GO:0030156)