GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nkx1-1 Links NCBI RGD Ensembl	ENSRNOG00000005113	NK1 homeobox 1
Nkx1-2 Links NCBI RGD Ensembl	ENSRNOG00000017006	NK1 homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nkx1-2	rn6_v1_chr1_-_204605552_204605552	0.57	3.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_35979193 Show fit	0.20	ENSRNOT00000071104	Tmem132b Links NCBI RGD Ensembl Show fit	transmembrane protein 132B
chr2_+_145174876 Show fit	0.19	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr5_-_168734296 Show fit	0.16	ENSRNOT00000066120	Camta1 Links NCBI RGD Ensembl Show fit	calmodulin binding transcription activator 1
chrX_+_15113878 Show fit	0.15	ENSRNOT00000007464	Wdr13 Links NCBI RGD Ensembl Show fit	WD repeat domain 13
chr1_+_278557792 Show fit	0.14	ENSRNOT00000023414	Atrnl1 Links NCBI RGD Ensembl Show fit	attractin like 1
chr10_+_103395511 Show fit	0.11	ENSRNOT00000004256	Gprc5c Links NCBI RGD Ensembl Show fit	G protein-coupled receptor, class C, group 5, member C
chr3_+_14889510 Show fit	0.09	ENSRNOT00000080760	Dab2ip Links NCBI RGD Ensembl Show fit	DAB2 interacting protein
chr9_+_10013854 Show fit	0.08	ENSRNOT00000077653 ENSRNOT00000072033	Khsrp Links NCBI RGD Ensembl Show fit	KH-type splicing regulatory protein
chr19_+_45938915 Show fit	0.07	ENSRNOT00000065508	Mon1b Links NCBI RGD Ensembl Show fit	MON1 homolog B, secretory trafficking associated
chr2_-_33025271 Show fit	0.07	ENSRNOT00000074941	NEWGENE_1310139 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr7_+_2752680 Show fit	0.06	ENSRNOT00000033726	Cs Links NCBI RGD Ensembl Show fit	citrate synthase
chr4_+_88694583 Show fit	0.06	ENSRNOT00000009202	Ppm1k Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1K
chr3_-_120076788 Show fit	0.06	ENSRNOT00000047158	Kcnip3 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel interacting protein 3
chr9_+_71915421 Show fit	0.05	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr11_-_51202703 Show fit	0.05	ENSRNOT00000002719 ENSRNOT00000077220	Cblb Links NCBI RGD Ensembl Show fit	Cbl proto-oncogene B
chr9_+_73418607 Show fit	0.05	ENSRNOT00000092547	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr20_+_6211420 Show fit	0.05	ENSRNOT00000000624	Kctd20 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 20
chr17_+_63635086 Show fit	0.05	ENSRNOT00000020634	Dip2c Links NCBI RGD Ensembl Show fit	disco-interacting protein 2 homolog C
chr1_+_282134981 Show fit	0.05	ENSRNOT00000036203	Nanos1 Links NCBI RGD Ensembl Show fit	nanos C2HC-type zinc finger 1
chr3_+_62648447 Show fit	0.05	ENSRNOT00000002111	Agps Links NCBI RGD Ensembl Show fit	alkylglycerone phosphate synthase
chr8_+_32188617 Show fit	0.05	ENSRNOT00000081145	Zbtb44 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 44
chr1_-_64147251 Show fit	0.05	ENSRNOT00000088502	Cnot3 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex, subunit 3
chr10_+_103206014 Show fit	0.05	ENSRNOT00000004081	Ttyh2 Links NCBI RGD Ensembl Show fit	tweety family member 2
chr2_-_196177775 Show fit	0.04	ENSRNOT00000028553	Zfp687 Links NCBI RGD Ensembl Show fit	zinc finger protein 687
chr1_-_215284548 Show fit	0.04	ENSRNOT00000090375	Cttn Links NCBI RGD Ensembl Show fit	cortactin
chr2_-_188718704 Show fit	0.04	ENSRNOT00000028010	Zbtb7b Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 7B
chr12_+_49665282 Show fit	0.04	ENSRNOT00000086397	Grk3 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor kinase 3
chr1_+_141767940 Show fit	0.04	ENSRNOT00000064034	Zfp710 Links NCBI RGD Ensembl Show fit	zinc finger protein 710
chr17_-_22678253 Show fit	0.04	ENSRNOT00000083122	LOC100362172 Links NCBI RGD Ensembl Show fit	LRRGT00112-like
chr16_-_10802512 Show fit	0.04	ENSRNOT00000079554	Bmpr1a Links NCBI RGD Ensembl Show fit	bone morphogenetic protein receptor type 1A
chr20_+_12944786 Show fit	0.03	ENSRNOT00000048218	Pcnt Links NCBI RGD Ensembl Show fit	pericentrin
chr1_-_100926335 Show fit	0.03	ENSRNOT00000020304	Ap2a1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 2, alpha 1 subunit
chr16_+_7035068 Show fit	0.03	ENSRNOT00000024296	Nek4 Links NCBI RGD Ensembl Show fit	NIMA-related kinase 4
chr9_-_43022998 Show fit	0.03	ENSRNOT00000063781 ENSRNOT00000089843	Lman2l Links NCBI RGD Ensembl Show fit	lectin, mannose-binding 2-like
chr7_-_12673659 Show fit	0.03	ENSRNOT00000091650 ENSRNOT00000041277 ENSRNOT00000044865	Ptbp1 Links NCBI RGD Ensembl Show fit	polypyrimidine tract binding protein 1
chr1_+_15834779 Show fit	0.03	ENSRNOT00000079069 ENSRNOT00000083012	Bclaf1 Links NCBI RGD Ensembl Show fit	BCL2-associated transcription factor 1
chr16_+_7035241 Show fit	0.03	ENSRNOT00000084977	Nek4 Links NCBI RGD Ensembl Show fit	NIMA-related kinase 4
chr5_+_131380297 Show fit	0.03	ENSRNOT00000010548	Agbl4 Links NCBI RGD Ensembl Show fit	ATP/GTP binding protein-like 4
chr6_+_111076351 Show fit	0.03	ENSRNOT00000089644	Tmem63c Links NCBI RGD Ensembl Show fit	transmembrane protein 63c
chr17_-_87826421 Show fit	0.03	ENSRNOT00000068156	Arhgap21 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 21
chr2_+_148765412 Show fit	0.03	ENSRNOT00000018248 ENSRNOT00000084662	Selenot Links NCBI RGD Ensembl Show fit	selenoprotein T
chr8_-_21492801 Show fit	0.03	ENSRNOT00000077465	Zfp426 Links NCBI RGD Ensembl Show fit	zinc finger protein 426
chr1_-_198450047 Show fit	0.03	ENSRNOT00000027360	Mvp Links NCBI RGD Ensembl Show fit	major vault protein
chr10_-_65502936 Show fit	0.03	ENSRNOT00000089615	Supt6h Links NCBI RGD Ensembl Show fit	SPT6 homolog, histone chaperone
chr13_+_92569785 Show fit	0.03	ENSRNOT00000082700	Fmn2 Links NCBI RGD Ensembl Show fit	formin 2
chr17_-_78812111 Show fit	0.02	ENSRNOT00000021506	Dclre1c Links NCBI RGD Ensembl Show fit	DNA cross-link repair 1C
chr13_+_91054974 Show fit	0.02	ENSRNOT00000091089	Crp Links NCBI RGD Ensembl Show fit	C-reactive protein
chr2_-_219458271 Show fit	0.02	ENSRNOT00000064735	Cdc14a Links NCBI RGD Ensembl Show fit	cell division cycle 14A
chr9_+_3896337 Show fit	0.02	ENSRNOT00000079166	LOC103693189 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase type IVA 1
chr14_+_82375181 Show fit	0.02	ENSRNOT00000023904	Fam53a Links NCBI RGD Ensembl Show fit	family with sequence similarity 53, member A
chrX_+_73390903 Show fit	0.02	ENSRNOT00000077002	Zfp449 Links NCBI RGD Ensembl Show fit	zinc finger protein 449
chrX_+_140878216 Show fit	0.02	ENSRNOT00000075840 ENSRNOT00000077026	Zic3 Links NCBI RGD Ensembl Show fit	Zic family member 3
chr7_-_91538673 Show fit	0.02	ENSRNOT00000006209	Rad21 Links NCBI RGD Ensembl Show fit	RAD21 cohesin complex component
chr13_-_83457888 Show fit	0.02	ENSRNOT00000076289 ENSRNOT00000004065	Sft2d2 Links NCBI RGD Ensembl Show fit	SFT2 domain containing 2
chr1_-_101819478 Show fit	0.02	ENSRNOT00000056181	Grwd1 Links NCBI RGD Ensembl Show fit	glutamate-rich WD repeat containing 1
chr4_+_158088505 Show fit	0.02	ENSRNOT00000026643	Vwf Links NCBI RGD Ensembl Show fit	von Willebrand factor
chr1_-_134867001 Show fit	0.02	ENSRNOT00000090149	Chd2 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 2
chr5_+_71742911 Show fit	0.02	ENSRNOT00000047225	Zfp462 Links NCBI RGD Ensembl Show fit	zinc finger protein 462
chr5_-_154222702 Show fit	0.01	ENSRNOT00000080069	Pnrc2 Links NCBI RGD Ensembl Show fit	proline-rich nuclear receptor coactivator 2
chr7_+_71157664 Show fit	0.01	ENSRNOT00000005919	Sdr9c7 Links NCBI RGD Ensembl Show fit	short chain dehydrogenase/reductase family 9C, member 7
chr12_-_46493203 Show fit	0.01	ENSRNOT00000057036	Cit Links NCBI RGD Ensembl Show fit	citron rho-interacting serine/threonine kinase
chr11_-_60882379 Show fit	0.01	ENSRNOT00000002799	Cd200r1 Links NCBI RGD Ensembl Show fit	CD200 receptor 1
chr6_-_108660063 Show fit	0.01	ENSRNOT00000006240	Arel1 Links NCBI RGD Ensembl Show fit	apoptosis resistant E3 ubiquitin protein ligase 1
chr8_+_70789256 Show fit	0.01	ENSRNOT00000048302	Clpx Links NCBI RGD Ensembl Show fit	caseinolytic mitochondrial matrix peptidase chaperone subunit
chr3_-_90751055 Show fit	0.01	ENSRNOT00000040741	LOC499843 Links NCBI RGD Ensembl Show fit	LRRGT00091
chr1_-_89007041 Show fit	0.01	ENSRNOT00000032363	Proser3 Links NCBI RGD Ensembl Show fit	proline and serine rich 3
chr13_+_67611708 Show fit	0.01	ENSRNOT00000063833	Tpr Links NCBI RGD Ensembl Show fit	translocated promoter region, nuclear basket protein
chr1_-_134871167 Show fit	0.01	ENSRNOT00000076300	Chd2 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 2
chr8_-_78096302 Show fit	0.01	ENSRNOT00000086185 ENSRNOT00000077999	Myzap Links NCBI RGD Ensembl Show fit	myocardial zonula adherens protein
chr2_-_210088949 Show fit	0.01	ENSRNOT00000070994	Rbm15 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 15
chr15_-_80713153 Show fit	0.01	ENSRNOT00000063800	Klhl1 Links NCBI RGD Ensembl Show fit	kelch-like family member 1
chr1_+_261180007 Show fit	0.01	ENSRNOT00000072181	Zdhhc16 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 16
chr12_-_12738620 Show fit	0.01	ENSRNOT00000078603 ENSRNOT00000067021	Pms2 Links NCBI RGD Ensembl Show fit	PMS1 homolog 2, mismatch repair system component
chr6_+_18880737 Show fit	0.01	ENSRNOT00000003432	Alkbh8 Links NCBI RGD Ensembl Show fit	alkB homolog 8, tRNA methyltransferase
chr20_-_13994794 Show fit	0.01	ENSRNOT00000093466	Ggt5 Links NCBI RGD Ensembl Show fit	gamma-glutamyltransferase 5
chr3_+_80081647 Show fit	0.01	ENSRNOT00000057161	Arfgap2 Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor GTPase activating protein 2
chr10_+_48569555 Show fit	0.01	ENSRNOT00000003966	Adora2b Links NCBI RGD Ensembl Show fit	adenosine A2B receptor
chr5_+_36566783 Show fit	0.01	ENSRNOT00000077650	Fbxl4 Links NCBI RGD Ensembl Show fit	F-box and leucine-rich repeat protein 4
chr5_+_144114012 Show fit	0.01	ENSRNOT00000035597	Stk40 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 40
chr1_-_127292090 Show fit	0.01	ENSRNOT00000016959	Lrrk1 Links NCBI RGD Ensembl Show fit	leucine-rich repeat kinase 1
chr16_+_39144972 Show fit	0.01	ENSRNOT00000086728	Adam21 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 21
chr14_-_7863664 Show fit	0.00	ENSRNOT00000061162	Ptpn13 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 13
chr5_+_58995249 Show fit	0.00	ENSRNOT00000023411	Ccdc107 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 107
chr2_-_149432106 Show fit	0.00	ENSRNOT00000051027	P2ry13 Links NCBI RGD Ensembl Show fit	purinergic receptor P2Y13
chr7_+_117055395 Show fit	0.00	ENSRNOT00000091960	Mapk15 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 15
chr6_-_44361908 Show fit	0.00	ENSRNOT00000009491	Id2 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 2, HLH protein
chr1_-_80544825 Show fit	0.00	ENSRNOT00000057802 ENSRNOT00000040060 ENSRNOT00000067049 ENSRNOT00000052387 ENSRNOT00000073352	Relb Links NCBI RGD Ensembl Show fit	RELB proto-oncogene, NF-kB subunit
chr4_+_14001761 Show fit	0.00	ENSRNOT00000076519	Cd36 Links NCBI RGD Ensembl Show fit	CD36 molecule
chr1_+_88113445 Show fit	0.00	ENSRNOT00000056955	Ggn Links NCBI RGD Ensembl Show fit	gametogenetin
chr14_-_16903242 Show fit	0.00	ENSRNOT00000003001	Shroom3 Links NCBI RGD Ensembl Show fit	shroom family member 3
chr4_-_55011415 Show fit	0.00	ENSRNOT00000056996	Grm8 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 8
chr14_+_81858737 Show fit	0.00	ENSRNOT00000029784 ENSRNOT00000058068 ENSRNOT00000058067	Poln Links NCBI RGD Ensembl Show fit	DNA polymerase nu
chr14_-_113644779 Show fit	0.00	ENSRNOT00000005306	Cfap36 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 36
chr18_+_4084228 Show fit	0.00	ENSRNOT00000071392	Cabyr Links NCBI RGD Ensembl Show fit	calcium binding tyrosine phosphorylation regulated
chr4_-_88684415 Show fit	0.00	ENSRNOT00000009001	LOC500148 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S7 (S8)
chr2_+_248398917 Show fit	0.00	ENSRNOT00000045855	Gbp1 Links NCBI RGD Ensembl Show fit	guanylate binding protein 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019086	late viral transcription(GO:0019086)
0.0	0.1	GO:0036324	vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324)
0.0	0.1	GO:0098749	cerebellar neuron development(GO:0098749)
0.0	0.0	GO:0046154	eye pigment metabolic process(GO:0042441) pigment metabolic process involved in developmental pigmentation(GO:0043324) pigment metabolic process involved in pigmentation(GO:0043474) rhodopsin metabolic process(GO:0046154)
0.0	0.0	GO:0048382	lateral mesodermal cell fate commitment(GO:0048372) lateral mesodermal cell fate specification(GO:0048377) regulation of lateral mesodermal cell fate specification(GO:0048378) mesendoderm development(GO:0048382) regulation of cardiac ventricle development(GO:1904412)
0.0	0.0	GO:1900126	negative regulation of hyaluronan biosynthetic process(GO:1900126)
0.0	0.1	GO:0061469	regulation of type B pancreatic cell proliferation(GO:0061469)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990032	parallel fiber(GO:1990032)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0035662	Toll-like receptor 4 binding(GO:0035662)
0.0	0.1	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912)
0.0	0.0	GO:0001069	regulatory region RNA binding(GO:0001069)