GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nkx2-6 Links NCBI RGD Ensembl	ENSRNOG00000021910	NK2 homeobox 6

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_+_91830654 Show fit	0.07	ENSRNOT00000005176	Wnt3 Links NCBI RGD Ensembl Show fit	wingless-type MMTV integration site family, member 3
chrX_-_157286936 Show fit	0.03	ENSRNOT00000078100	Atp2b3 Links NCBI RGD Ensembl Show fit	ATPase plasma membrane Ca2+ transporting 3
chr4_-_180234804 Show fit	0.03	ENSRNOT00000070957	Bhlhe41 Links NCBI RGD Ensembl Show fit	basic helix-loop-helix family, member e41
chr17_-_81187739 Show fit	0.02	ENSRNOT00000063911	Hacd1 Links NCBI RGD Ensembl Show fit	3-hydroxyacyl-CoA dehydratase 1
chr10_+_49538588 Show fit	0.02	ENSRNOT00000081415	Pmp22 Links NCBI RGD Ensembl Show fit	peripheral myelin protein 22
chr7_+_107406962 Show fit	0.02	ENSRNOT00000093254	Phf20l1 Links NCBI RGD Ensembl Show fit	PHD finger protein 20-like protein 1
chr3_-_141411170 Show fit	0.01	ENSRNOT00000017364	Nkx2-2 Links NCBI RGD Ensembl Show fit	NK2 homeobox 2
chr9_+_17784468 Show fit	0.01	ENSRNOT00000026831	Slc29a1 Links NCBI RGD Ensembl Show fit	solute carrier family 29 member 1
chr2_+_84645084 Show fit	0.01	ENSRNOT00000015448	Cmbl Links NCBI RGD Ensembl Show fit	carboxymethylenebutenolidase homolog
chr5_-_115222075 Show fit	0.01	ENSRNOT00000058163 ENSRNOT00000012503	LOC100912642 Links NCBI RGD Ensembl Show fit	cytochrome P450 2J3-like
chr1_-_252922486 Show fit	0.01	ENSRNOT00000076802	Ifit1bl Links NCBI RGD Ensembl Show fit	interferon-induced protein with tetratricopeptide repeats 1B-like
chr3_-_46051096 Show fit	0.01	ENSRNOT00000081302	Baz2b Links NCBI RGD Ensembl Show fit	bromodomain adjacent to zinc finger domain, 2B
chr3_-_46942966 Show fit	0.00	ENSRNOT00000087439	Rbms1 Links NCBI RGD Ensembl Show fit	RNA binding motif, single stranded interacting protein 1
chr15_+_4475051 Show fit	0.00	ENSRNOT00000008461	Kcnk16 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 16
chr1_-_282251257 Show fit	0.00	ENSRNOT00000015186	Prdx3 Links NCBI RGD Ensembl Show fit	peroxiredoxin 3
chr14_+_88549947 Show fit	0.00	ENSRNOT00000086177	Hnrnpc Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein C
chr3_+_140024043 Show fit	0.00	ENSRNOT00000086409	Rin2 Links NCBI RGD Ensembl Show fit	Ras and Rab interactor 2
chr16_-_56900052 Show fit	0.00	ENSRNOT00000017339	Msr1 Links NCBI RGD Ensembl Show fit	macrophage scavenger receptor 1
chrX_+_78259409 Show fit	0.00	ENSRNOT00000049779	RGD1560455 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA A630033H20 gene

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1904954	Spemann organizer formation(GO:0060061) canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation(GO:1904954)