GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_28654733 Show fit	0.81	ENSRNOT00000006174	Pmch Links NCBI RGD Ensembl Show fit	pro-melanin-concentrating hormone
chr1_+_33910912 Show fit	0.24	ENSRNOT00000044690	Irx1 Links NCBI RGD Ensembl Show fit	iroquois homeobox 1
chr1_-_7801438 Show fit	0.17	ENSRNOT00000022273	AABR07000276.1 Links NCBI RGD Ensembl Show fit
chr5_+_50381244 Show fit	0.17	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr1_+_279798187 Show fit	0.15	ENSRNOT00000024065	Pnlip Links NCBI RGD Ensembl Show fit	pancreatic lipase
chr5_-_127273656 Show fit	0.14	ENSRNOT00000057341	Dmrtb1 Links NCBI RGD Ensembl Show fit	DMRT-like family B with proline-rich C-terminal, 1
chr7_-_119441487 Show fit	0.13	ENSRNOT00000067635	Pvalb Links NCBI RGD Ensembl Show fit	parvalbumin
chr8_-_61917125 Show fit	0.11	ENSRNOT00000085049	RGD1305464 Links NCBI RGD Ensembl Show fit	similar to human chromosome 15 open reading frame 39
chr10_-_87407634 Show fit	0.11	ENSRNOT00000016657	Krt23 Links NCBI RGD Ensembl Show fit	keratin 23
chr3_+_161018511 Show fit	0.11	ENSRNOT00000019804 ENSRNOT00000039664	Wfdc2 Links NCBI RGD Ensembl Show fit	WAP four-disulfide core domain 2
chr4_-_30338679 Show fit	0.10	ENSRNOT00000012050	Pon3 Links NCBI RGD Ensembl Show fit	paraoxonase 3
chr6_-_145777767 Show fit	0.10	ENSRNOT00000046799	Rpl32 Links NCBI RGD Ensembl Show fit	ribosomal protein L32
chr5_-_38923095 Show fit	0.09	ENSRNOT00000009146	AABR07047593.1 Links NCBI RGD Ensembl Show fit
chr11_+_81358592 Show fit	0.09	ENSRNOT00000002487	Rfc4 Links NCBI RGD Ensembl Show fit	replication factor C subunit 4
chrM_+_7758 Show fit	0.08	ENSRNOT00000046201	Mt-atp8 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 8
chr14_-_44375804 Show fit	0.08	ENSRNOT00000042825	LOC100362751 Links NCBI RGD Ensembl Show fit	ribosomal protein P2-like
chr9_-_29337922 Show fit	0.08	ENSRNOT00000018896	RGD1309049 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4933415F23
chr20_-_27117663 Show fit	0.07	ENSRNOT00000000434	Pbld1 Links NCBI RGD Ensembl Show fit	phenazine biosynthesis-like protein domain containing 1
chrX_+_77065397 Show fit	0.07	ENSRNOT00000090007	Cox7b Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 7B
chr9_+_69953440 Show fit	0.07	ENSRNOT00000034740	Eef1b2 Links NCBI RGD Ensembl Show fit	eukaryotic translation elongation factor 1 beta 2
chr1_+_256786124 Show fit	0.07	ENSRNOT00000034563	Ffar4 Links NCBI RGD Ensembl Show fit	free fatty acid receptor 4
chr8_-_43480777 Show fit	0.07	ENSRNOT00000060074	LOC688473 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S2
chr3_-_2798470 Show fit	0.07	ENSRNOT00000022495	Phpt1 Links NCBI RGD Ensembl Show fit	phosphohistidine phosphatase 1
chr12_+_22274828 Show fit	0.07	ENSRNOT00000001914	Epo Links NCBI RGD Ensembl Show fit	erythropoietin
chr1_-_84812486 Show fit	0.06	ENSRNOT00000078369	AABR07002779.1 Links NCBI RGD Ensembl Show fit
chr3_-_60813869 Show fit	0.06	ENSRNOT00000058234	Atp5g3 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
chr12_-_30566032 Show fit	0.06	ENSRNOT00000093378	Gbas Links NCBI RGD Ensembl Show fit	glioblastoma amplified sequence
chr11_+_60072727 Show fit	0.06	ENSRNOT00000090230	Tagln3 Links NCBI RGD Ensembl Show fit	transgelin 3
chr11_+_57505005 Show fit	0.06	ENSRNOT00000002942	LOC103693564 Links NCBI RGD Ensembl Show fit	transgelin-3
chr7_+_98813040 Show fit	0.06	ENSRNOT00000012616	Ndufb9 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit B9
chr6_-_93562314 Show fit	0.06	ENSRNOT00000010871 ENSRNOT00000088790	Timm9 Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 9
chr12_+_44046217 Show fit	0.05	ENSRNOT00000080853 ENSRNOT00000079510	Fbxw8 Links NCBI RGD Ensembl Show fit	F-box and WD repeat domain containing 8
chr1_-_233140237 Show fit	0.05	ENSRNOT00000083372	Psat1 Links NCBI RGD Ensembl Show fit	phosphoserine aminotransferase 1
chr13_+_42220251 Show fit	0.05	ENSRNOT00000078185	AABR07020815.1 Links NCBI RGD Ensembl Show fit
chr14_+_46649971 Show fit	0.04	ENSRNOT00000085875	AABR07015078.1 Links NCBI RGD Ensembl Show fit
chr4_-_176720012 Show fit	0.04	ENSRNOT00000017965	Ldhb Links NCBI RGD Ensembl Show fit	lactate dehydrogenase B
chr8_+_89369417 Show fit	0.04	ENSRNOT00000037530	Mei4 Links NCBI RGD Ensembl Show fit	meiotic double-stranded break formation protein 4
chr4_+_145413230 Show fit	0.04	ENSRNOT00000056508	Il17re Links NCBI RGD Ensembl Show fit	interleukin 17 receptor E
chr13_+_51972974 Show fit	0.04	ENSRNOT00000008164	Arl8a Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor like GTPase 8A
chr7_-_55604403 Show fit	0.04	ENSRNOT00000088732	Atxn7l3b Links NCBI RGD Ensembl Show fit	ataxin 7-like 3B
chr15_-_29369504 Show fit	0.04	ENSRNOT00000060297	AABR07017624.1 Links NCBI RGD Ensembl Show fit
chr8_+_48406260 Show fit	0.04	ENSRNOT00000009975	Usp2 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 2
chrX_-_15467875 Show fit	0.04	ENSRNOT00000011207	Pim2 Links NCBI RGD Ensembl Show fit	Pim-2 proto-oncogene, serine/threonine kinase
chr8_+_62283336 Show fit	0.04	ENSRNOT00000025410	Rpp25 Links NCBI RGD Ensembl Show fit	ribonuclease P/MRP 25 subunit
chr8_-_115626380 Show fit	0.04	ENSRNOT00000019107	Manf Links NCBI RGD Ensembl Show fit	mesencephalic astrocyte-derived neurotrophic factor
chr9_-_17254949 Show fit	0.04	ENSRNOT00000026499	Mrps18a Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein S18A
chr2_+_251983339 Show fit	0.03	ENSRNOT00000020230	Mcoln3 Links NCBI RGD Ensembl Show fit	mucolipin 3
chr4_-_145390447 Show fit	0.03	ENSRNOT00000091965 ENSRNOT00000012136	Cidec Links NCBI RGD Ensembl Show fit	cell death-inducing DFFA-like effector c
chr6_+_58467254 Show fit	0.03	ENSRNOT00000065396	Etv1 Links NCBI RGD Ensembl Show fit	ets variant 1
chrX_+_128493614 Show fit	0.03	ENSRNOT00000044240	Stag2 Links NCBI RGD Ensembl Show fit	stromal antigen 2
chrM_+_7919 Show fit	0.03	ENSRNOT00000046108	Mt-atp6 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 6
chr4_-_131694755 Show fit	0.03	ENSRNOT00000013271	Foxp1 Links NCBI RGD Ensembl Show fit	forkhead box P1
chr9_+_66058047 Show fit	0.03	ENSRNOT00000071819	Cdk15 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 15
chr10_-_31493419 Show fit	0.03	ENSRNOT00000009211	Itk Links NCBI RGD Ensembl Show fit	IL2-inducible T-cell kinase
chr14_+_108826831 Show fit	0.03	ENSRNOT00000083146 ENSRNOT00000009421	Bcl11a Links NCBI RGD Ensembl Show fit	B-cell CLL/lymphoma 11A
chr2_+_205525204 Show fit	0.03	ENSRNOT00000091210	Csde1 Links NCBI RGD Ensembl Show fit	cold shock domain containing E1
chr15_-_28696122 Show fit	0.03	ENSRNOT00000060467	Rab2b Links NCBI RGD Ensembl Show fit	RAB2B, member RAS oncogene family
chr7_+_35773928 Show fit	0.03	ENSRNOT00000034639	Cep83 Links NCBI RGD Ensembl Show fit	centrosomal protein 83
chr6_-_138662365 Show fit	0.03	ENSRNOT00000066209 ENSRNOT00000084892	Ighm Links NCBI RGD Ensembl Show fit	immunoglobulin heavy constant mu
chr2_-_23260965 Show fit	0.03	ENSRNOT00000046772	LOC103691423 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L36 pseudogene
chrX_-_16526028 Show fit	0.03	ENSRNOT00000093647	Dgkk Links NCBI RGD Ensembl Show fit	diacylglycerol kinase kappa
chr1_-_90091287 Show fit	0.02	ENSRNOT00000032613	Gpi Links NCBI RGD Ensembl Show fit	glucose-6-phosphate isomerase
chr2_-_241472694 Show fit	0.02	ENSRNOT00000051498	Bank1 Links NCBI RGD Ensembl Show fit	B-cell scaffold protein with ankyrin repeats 1
chr3_-_113342675 Show fit	0.02	ENSRNOT00000020130	Strc Links NCBI RGD Ensembl Show fit	stereocilin
chr20_+_41184287 Show fit	0.02	ENSRNOT00000081117	Col10a1 Links NCBI RGD Ensembl Show fit	collagen type X alpha 1 chain
chrX_-_152367861 Show fit	0.02	ENSRNOT00000089414	LOC103690371 Links NCBI RGD Ensembl Show fit	melanoma-associated antigen 10-like
chr1_-_174047572 Show fit	0.02	ENSRNOT00000019597	Stk33 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 33
chr12_+_48101673 Show fit	0.02	ENSRNOT00000065060	Foxn4 Links NCBI RGD Ensembl Show fit	forkhead box N4
chr17_+_54280851 Show fit	0.02	ENSRNOT00000024022	Arhgap12 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 12
chr10_+_15241590 Show fit	0.02	ENSRNOT00000037372 ENSRNOT00000037381	Mettl26 Links NCBI RGD Ensembl Show fit	methyltransferase like 26
chr7_+_141355994 Show fit	0.02	ENSRNOT00000081195	Smarcd1 Links NCBI RGD Ensembl Show fit	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
chrX_-_64908682 Show fit	0.02	ENSRNOT00000084107	Zc4h2 Links NCBI RGD Ensembl Show fit	zinc finger C4H2-type containing
chr19_-_14945302 Show fit	0.02	ENSRNOT00000079391	AABR07042936.2 Links NCBI RGD Ensembl Show fit
chr5_-_107388182 Show fit	0.01	ENSRNOT00000058358	LOC100912356 Links NCBI RGD Ensembl Show fit	interferon alpha-1-like
chr9_+_81644355 Show fit	0.01	ENSRNOT00000071700	Catip Links NCBI RGD Ensembl Show fit	ciliogenesis associated TTC17 interacting protein
chr15_+_28696378 Show fit	0.01	ENSRNOT00000017476	Tox4 Links NCBI RGD Ensembl Show fit	TOX high mobility group box family member 4
chr20_-_4132604 Show fit	0.01	ENSRNOT00000077630 ENSRNOT00000048332	RT1-Da Links NCBI RGD Ensembl Show fit	RT1 class II, locus Da
chr20_+_3364814 Show fit	0.01	ENSRNOT00000001077	RGD1302996 Links NCBI RGD Ensembl Show fit	hypothetical protein MGC:15854
chrX_-_81817101 Show fit	0.01	ENSRNOT00000003730	AABR07039648.1 Links NCBI RGD Ensembl Show fit
chr5_-_153184940 Show fit	0.01	ENSRNOT00000079536	Tmem57 Links NCBI RGD Ensembl Show fit	transmembrane protein 57
chr15_+_58170967 Show fit	0.01	ENSRNOT00000001366	Nufip1 Links NCBI RGD Ensembl Show fit	NUFIP1, FMR1 interacting protein 1
chr8_-_39266959 Show fit	0.01	ENSRNOT00000046590	Ei24 Links NCBI RGD Ensembl Show fit	EI24, autophagy associated transmembrane protein
chr18_-_52017734 Show fit	0.01	ENSRNOT00000081020	March3 Links NCBI RGD Ensembl Show fit	membrane associated ring-CH-type finger 3
chr1_-_90961717 Show fit	0.01	ENSRNOT00000071180	LOC108348106 Links NCBI RGD Ensembl Show fit	alpha-ketoglutarate-dependent dioxygenase alkB homolog 6
chr5_-_73494030 Show fit	0.01	ENSRNOT00000022291	Actl7b Links NCBI RGD Ensembl Show fit	actin-like 7b
chr1_-_197778490 Show fit	0.01	ENSRNOT00000024185	Spns1 Links NCBI RGD Ensembl Show fit	SPNS sphingolipid transporter 1
chr7_+_142106465 Show fit	0.01	ENSRNOT00000042786 ENSRNOT00000088681	Letmd1 Links NCBI RGD Ensembl Show fit	LETM1 domain containing 1
chr17_-_52569036 Show fit	0.01	ENSRNOT00000019396	Gli3 Links NCBI RGD Ensembl Show fit	GLI family zinc finger 3
chr17_+_47721977 Show fit	0.01	ENSRNOT00000080800	LOC100910792 Links NCBI RGD Ensembl Show fit	amphiphysin-like
chr18_+_30010918 Show fit	0.01	ENSRNOT00000084132	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr19_-_41010122 Show fit	0.00	ENSRNOT00000088770	Vac14 Links NCBI RGD Ensembl Show fit	Vac14, PIKFYVE complex component
chr11_-_67037115 Show fit	0.00	ENSRNOT00000003137	Ildr1 Links NCBI RGD Ensembl Show fit	immunoglobulin-like domain containing receptor 1
chrX_-_23649466 Show fit	0.00	ENSRNOT00000059431	Shroom2 Links NCBI RGD Ensembl Show fit	shroom family member 2
chr8_+_50525091 Show fit	0.00	ENSRNOT00000074357	Apoa1 Links NCBI RGD Ensembl Show fit	apolipoprotein A1
chr9_+_81427730 Show fit	0.00	ENSRNOT00000019109 ENSRNOT00000081711	Cxcr2 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine receptor 2
chrX_+_71155894 Show fit	0.00	ENSRNOT00000076479	Foxo4 Links NCBI RGD Ensembl Show fit	forkhead box O4
chr8_+_85951191 Show fit	0.00	ENSRNOT00000037665	Cd109 Links NCBI RGD Ensembl Show fit	CD109 molecule
chr1_+_46779860 Show fit	0.00	ENSRNOT00000075268	Snx9 Links NCBI RGD Ensembl Show fit	sorting nexin 9
chr12_-_11144754 Show fit	0.00	ENSRNOT00000084637	Zfp655 Links NCBI RGD Ensembl Show fit	zinc finger protein 655

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.8	GO:0032227	negative regulation of synaptic transmission, dopaminergic(GO:0032227)
0.1	0.2	GO:0072268	specification of loop of Henle identity(GO:0072086) pattern specification involved in metanephros development(GO:0072268)
0.0	0.1	GO:0060392	negative regulation of SMAD protein import into nucleus(GO:0060392)
0.0	0.1	GO:1902219	negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress(GO:1902219)
0.0	0.1	GO:0009804	coumarin metabolic process(GO:0009804) negative regulation of superoxide anion generation(GO:0032929)
0.0	0.1	GO:0061365	positive regulation of triglyceride lipase activity(GO:0061365)
0.0	0.1	GO:0045039	protein import into mitochondrial inner membrane(GO:0045039)
0.0	0.2	GO:0046884	thyroid hormone generation(GO:0006590) follicle-stimulating hormone secretion(GO:0046884)
0.0	0.0	GO:0061470	T follicular helper cell differentiation(GO:0061470)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005853	eukaryotic translation elongation factor 1 complex(GO:0005853)
0.0	0.1	GO:0005663	DNA replication factor C complex(GO:0005663)
0.0	0.2	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263)
0.0	0.1	GO:0042719	mitochondrial intermembrane space protein transporter complex(GO:0042719)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0046573	lactonohydrolase activity(GO:0046573) acyl-L-homoserine-lactone lactonohydrolase activity(GO:0102007)
0.0	0.1	GO:0005128	erythropoietin receptor binding(GO:0005128)
0.0	0.8	GO:0071855	neuropeptide receptor binding(GO:0071855)
0.0	0.0	GO:0004459	L-lactate dehydrogenase activity(GO:0004459)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	REACTOME GLYCOPROTEIN HORMONES	Genes involved in Glycoprotein hormones