GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nr2c1 Links NCBI RGD Ensembl	ENSRNOG00000006983	nuclear receptor subfamily 2, group C, member 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nr2c1	rn6_v1_chr7_+_35070284_35070284	0.62	2.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr11_+_61531416 Show fit	0.06	ENSRNOT00000093263	Atp6v1a Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V1 subunit A
chr10_+_11373346 Show fit	0.05	ENSRNOT00000044624	LOC108348151 Links NCBI RGD Ensembl Show fit	coronin-7-like
chr10_+_86337728 Show fit	0.03	ENSRNOT00000085408	Tcap Links NCBI RGD Ensembl Show fit	titin-cap
chr8_-_84506328 Show fit	0.03	ENSRNOT00000064754	Mlip Links NCBI RGD Ensembl Show fit	muscular LMNA-interacting protein
chr5_-_137238354 Show fit	0.03	ENSRNOT00000039235	Szt2 Links NCBI RGD Ensembl Show fit	seizure threshold 2 homolog (mouse)
chr2_-_22798214 Show fit	0.03	ENSRNOT00000016135	Papd4 Links NCBI RGD Ensembl Show fit	poly(A) RNA polymerase D4, non-canonical
chr6_+_137184820 Show fit	0.03	ENSRNOT00000073796	Adssl1 Links NCBI RGD Ensembl Show fit	adenylosuccinate synthase like 1
chr4_+_157659147 Show fit	0.03	ENSRNOT00000048379	Iffo1 Links NCBI RGD Ensembl Show fit	intermediate filament family orphan 1
chr4_+_102426224 Show fit	0.02	ENSRNOT00000073768	LOC103694107 Links NCBI RGD Ensembl Show fit	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 pseudogene
chr9_+_66058047 Show fit	0.02	ENSRNOT00000071819	Cdk15 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 15
chr10_-_55965216 Show fit	0.02	ENSRNOT00000057058	Chd3 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 3
chr10_+_11090314 Show fit	0.02	ENSRNOT00000086305	Coro7 Links NCBI RGD Ensembl Show fit	coronin 7
chr2_-_178389608 Show fit	0.02	ENSRNOT00000013262	Etfdh Links NCBI RGD Ensembl Show fit	electron transfer flavoprotein dehydrogenase
chr17_-_63994169 Show fit	0.02	ENSRNOT00000075651	Chrm3 Links NCBI RGD Ensembl Show fit	cholinergic receptor, muscarinic 3
chr14_-_17582823 Show fit	0.02	ENSRNOT00000087686	LOC100911949 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100911949
chr3_+_97723901 Show fit	0.02	ENSRNOT00000080416	Mpped2 Links NCBI RGD Ensembl Show fit	metallophosphoesterase domain containing 2
chr3_-_80000091 Show fit	0.02	ENSRNOT00000079394	Madd Links NCBI RGD Ensembl Show fit	MAP-kinase activating death domain
chr5_-_136112344 Show fit	0.02	ENSRNOT00000050195	RGD1563714 Links NCBI RGD Ensembl Show fit	RGD1563714
chr13_-_73056765 Show fit	0.02	ENSRNOT00000000049	Xpr1 Links NCBI RGD Ensembl Show fit	xenotropic and polytropic retrovirus receptor 1
chr1_+_144601410 Show fit	0.02	ENSRNOT00000047408	Efl1 Links NCBI RGD Ensembl Show fit	elongation factor like GTPase 1
chr7_+_71004417 Show fit	0.01	ENSRNOT00000005575	Myo1a Links NCBI RGD Ensembl Show fit	myosin IA
chr3_+_161272385 Show fit	0.01	ENSRNOT00000021052	Zswim3 Links NCBI RGD Ensembl Show fit	zinc finger, SWIM-type containing 3
chr19_-_55284663 Show fit	0.01	ENSRNOT00000018387	Snai3 Links NCBI RGD Ensembl Show fit	snail family transcriptional repressor 3
chr3_+_155297566 Show fit	0.01	ENSRNOT00000021435 ENSRNOT00000084866	Dhx35 Links NCBI RGD Ensembl Show fit	DEAH-box helicase 35
chr10_-_87541851 Show fit	0.01	ENSRNOT00000089610	RGD1561684 Links NCBI RGD Ensembl Show fit	similar to keratin associated protein 2-4
chr3_+_8873933 Show fit	0.01	ENSRNOT00000030996	Nup188 Links NCBI RGD Ensembl Show fit	nucleoporin 188
chr3_+_62648447 Show fit	0.01	ENSRNOT00000002111	Agps Links NCBI RGD Ensembl Show fit	alkylglycerone phosphate synthase
chr15_-_14510828 Show fit	0.01	ENSRNOT00000039347	Sntn Links NCBI RGD Ensembl Show fit	sentan, cilia apical structure protein
chr20_+_27954433 Show fit	0.01	ENSRNOT00000064288	Lims1 Links NCBI RGD Ensembl Show fit	LIM zinc finger domain containing 1
chr7_+_35069814 Show fit	0.01	ENSRNOT00000089228	Nr2c1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group C, member 1
chr1_+_222519615 Show fit	0.01	ENSRNOT00000083585	Rcor2 Links NCBI RGD Ensembl Show fit	REST corepressor 2
chr20_-_4863011 Show fit	0.01	ENSRNOT00000079503	Ltb Links NCBI RGD Ensembl Show fit	lymphotoxin beta
chr9_-_81565416 Show fit	0.01	ENSRNOT00000083582	Aamp Links NCBI RGD Ensembl Show fit	angio-associated, migratory cell protein
chr7_-_117267803 Show fit	0.01	ENSRNOT00000082271	Plec Links NCBI RGD Ensembl Show fit	plectin
chr9_+_81783349 Show fit	0.01	ENSRNOT00000021548	Cnot9 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex subunit 9
chr4_-_177196180 Show fit	0.01	ENSRNOT00000018999	St8sia1 Links NCBI RGD Ensembl Show fit	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
chr20_+_3351303 Show fit	0.01	ENSRNOT00000080419 ENSRNOT00000001065 ENSRNOT00000086503	Atat1 Links NCBI RGD Ensembl Show fit	alpha tubulin acetyltransferase 1
chr7_+_35070284 Show fit	0.01	ENSRNOT00000009578	Nr2c1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group C, member 1
chr9_-_10659357 Show fit	0.01	ENSRNOT00000091450	Kdm4b Links NCBI RGD Ensembl Show fit	lysine demethylase 4B
chr10_+_11240138 Show fit	0.01	ENSRNOT00000048687	Srl Links NCBI RGD Ensembl Show fit	sarcalumenin
chr7_-_117268300 Show fit	0.01	ENSRNOT00000091840	Plec Links NCBI RGD Ensembl Show fit	plectin
chr7_+_142397371 Show fit	0.01	ENSRNOT00000040890 ENSRNOT00000065379	Slc4a8 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 8
chr1_+_85162452 Show fit	0.01	ENSRNOT00000093347	Pak4 Links NCBI RGD Ensembl Show fit	p21 (RAC1) activated kinase 4
chr1_-_141579871 Show fit	0.01	ENSRNOT00000020002	Anpep Links NCBI RGD Ensembl Show fit	alanyl aminopeptidase, membrane
chr9_-_65763273 Show fit	0.01	ENSRNOT00000015034	Trak2 Links NCBI RGD Ensembl Show fit	trafficking kinesin protein 2
chr11_+_61531571 Show fit	0.00	ENSRNOT00000093467 ENSRNOT00000002727	Atp6v1a Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V1 subunit A
chr8_+_127171537 Show fit	0.00	ENSRNOT00000078625 ENSRNOT00000051290 ENSRNOT00000087753	Golga4 Links NCBI RGD Ensembl Show fit	golgin A4
chr9_+_17105151 Show fit	0.00	ENSRNOT00000091113	Tjap1 Links NCBI RGD Ensembl Show fit	tight junction associated protein 1
chrX_+_140878216 Show fit	0.00	ENSRNOT00000075840 ENSRNOT00000077026	Zic3 Links NCBI RGD Ensembl Show fit	Zic family member 3
chr9_+_65763437 Show fit	0.00	ENSRNOT00000043558	Stradb Links NCBI RGD Ensembl Show fit	STE20-related kinase adaptor beta
chr18_+_29490981 Show fit	0.00	ENSRNOT00000032316	Eif4ebp3 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4E binding protein 3
chr1_+_265904566 Show fit	0.00	ENSRNOT00000086041 ENSRNOT00000036156	Gbf1 Links NCBI RGD Ensembl Show fit	golgi brefeldin A resistant guanine nucleotide exchange factor 1
chr7_-_62162453 Show fit	0.00	ENSRNOT00000010720	Cand1 Links NCBI RGD Ensembl Show fit	cullin-associated and neddylation-dissociated 1
chr9_+_65478496 Show fit	0.00	ENSRNOT00000016060	Ndufb3 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit B3
chr15_+_19603288 Show fit	0.00	ENSRNOT00000035491	LOC102552640 Links NCBI RGD Ensembl Show fit	REST corepressor 2-like
chr1_+_47942800 Show fit	0.00	ENSRNOT00000079312	Wtap Links NCBI RGD Ensembl Show fit	Wilms tumor 1 associated protein
chr2_+_148722231 Show fit	0.00	ENSRNOT00000018022	Eif2a Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 2A
chr4_-_157408176 Show fit	0.00	ENSRNOT00000021915	Cd4 Links NCBI RGD Ensembl Show fit	Cd4 molecule
chr6_+_8284878 Show fit	0.00	ENSRNOT00000009581	Slc3a1 Links NCBI RGD Ensembl Show fit	solute carrier family 3 member 1
chr4_+_157181795 Show fit	0.00	ENSRNOT00000017090	Lpcat3 Links NCBI RGD Ensembl Show fit	lysophosphatidylcholine acyltransferase 3
chr7_+_121311024 Show fit	0.00	ENSRNOT00000092260 ENSRNOT00000023066 ENSRNOT00000081377	Syngr1 Links NCBI RGD Ensembl Show fit	synaptogyrin 1
chr1_+_107262659 Show fit	0.00	ENSRNOT00000022499	Gas2 Links NCBI RGD Ensembl Show fit	growth arrest-specific 2
chr11_-_84037938 Show fit	0.00	ENSRNOT00000002327	Abcf3 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily F member 3
chr4_-_113886994 Show fit	0.00	ENSRNOT00000037333	Htra2 Links NCBI RGD Ensembl Show fit	HtrA serine peptidase 2
chr19_+_22569999 Show fit	0.00	ENSRNOT00000022573	Dnaja2 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member A2
chr15_+_108960562 Show fit	0.00	ENSRNOT00000081906 ENSRNOT00000077482	Pcca Links NCBI RGD Ensembl Show fit	propionyl-CoA carboxylase alpha subunit
chr12_+_47407811 Show fit	0.00	ENSRNOT00000001565	Hnf1a Links NCBI RGD Ensembl Show fit	HNF1 homeobox A
chr13_+_99005142 Show fit	0.00	ENSRNOT00000004293	Acbd3 Links NCBI RGD Ensembl Show fit	acyl-CoA binding domain containing 3
chr14_+_85230648 Show fit	0.00	ENSRNOT00000089866	Ap1b1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 1, beta 1 subunit
chr9_-_9985358 Show fit	0.00	ENSRNOT00000080856	Crb3 Links NCBI RGD Ensembl Show fit	crumbs 3, cell polarity complex component

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0035995	detection of muscle stretch(GO:0035995)