GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nr2e3 Links NCBI RGD Ensembl	ENSRNOG00000050690	nuclear receptor subfamily 2, group E, member 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nr2e3	rn6_v1_chr8_-_64800467_64800467	-0.53	3.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr18_-_28017925 Show fit	0.07	ENSRNOT00000075420	Lrrtm2 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 2
chr14_+_32257805 Show fit	0.05	ENSRNOT00000039626	AABR07014804.1 Links NCBI RGD Ensembl Show fit
chr6_-_76552559 Show fit	0.05	ENSRNOT00000065230	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr1_-_126227469 Show fit	0.04	ENSRNOT00000087332	Tjp1 Links NCBI RGD Ensembl Show fit	tight junction protein 1
chr8_+_53411316 Show fit	0.04	ENSRNOT00000011107 ENSRNOT00000086957	Tmprss5 Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 5
chr8_-_80631873 Show fit	0.04	ENSRNOT00000091661 ENSRNOT00000080662	Unc13c Links NCBI RGD Ensembl Show fit	unc-13 homolog C
chr10_-_95262024 Show fit	0.04	ENSRNOT00000066487	Bptf Links NCBI RGD Ensembl Show fit	bromodomain PHD finger transcription factor
chr1_+_253221812 Show fit	0.03	ENSRNOT00000085880 ENSRNOT00000054753	Kif20b Links NCBI RGD Ensembl Show fit	kinesin family member 20B
chr13_+_60435946 Show fit	0.03	ENSRNOT00000004342	B3galt2 Links NCBI RGD Ensembl Show fit	Beta-1,3-galactosyltransferase 2
chr6_-_51257625 Show fit	0.03	ENSRNOT00000012004	Hbp1 Links NCBI RGD Ensembl Show fit	HMG-box transcription factor 1
chr6_-_76608864 Show fit	0.03	ENSRNOT00000010824	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr20_-_50564987 Show fit	0.03	ENSRNOT00000034485 ENSRNOT00000064466	Lin28b Links NCBI RGD Ensembl Show fit	lin-28 homolog B
chr14_-_17582823 Show fit	0.03	ENSRNOT00000087686	LOC100911949 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100911949
chr2_-_213178632 Show fit	0.03	ENSRNOT00000023079	LOC108348173 Links NCBI RGD Ensembl Show fit	protein arginine N-methyltransferase 6
chr8_-_64154396 Show fit	0.03	ENSRNOT00000031262	Bbs4 Links NCBI RGD Ensembl Show fit	Bardet-Biedl syndrome 4
chr1_+_98627372 Show fit	0.03	ENSRNOT00000030370	Dzf17 Links NCBI RGD Ensembl Show fit	zinc finger protein 17
chr1_-_78521999 Show fit	0.03	ENSRNOT00000021223	Arhgap35 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 35
chr19_-_17494516 Show fit	0.03	ENSRNOT00000078786 ENSRNOT00000076138	Chd9 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 9
chr3_+_79728796 Show fit	0.03	ENSRNOT00000068124	Kbtbd4 Links NCBI RGD Ensembl Show fit	kelch repeat and BTB domain containing 4
chr13_+_34400170 Show fit	0.02	ENSRNOT00000061516 ENSRNOT00000061515 ENSRNOT00000061513 ENSRNOT00000084506 ENSRNOT00000086641	Clasp1 Links NCBI RGD Ensembl Show fit	cytoplasmic linker associated protein 1
chr6_+_3375476 Show fit	0.02	ENSRNOT00000045349	LOC102551744 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 1-like
chr14_+_63095720 Show fit	0.02	ENSRNOT00000006071	Ppargc1a Links NCBI RGD Ensembl Show fit	PPARG coactivator 1 alpha
chr17_-_15467320 Show fit	0.02	ENSRNOT00000072490 ENSRNOT00000093561	Ogn Links NCBI RGD Ensembl Show fit	osteoglycin
chr1_+_25174456 Show fit	0.02	ENSRNOT00000092830	Clvs2 Links NCBI RGD Ensembl Show fit	clavesin 2
chr6_-_67084234 Show fit	0.02	ENSRNOT00000050372	Nova1 Links NCBI RGD Ensembl Show fit	NOVA alternative splicing regulator 1
chr5_-_59638385 Show fit	0.02	ENSRNOT00000060203 ENSRNOT00000077367	Rnf38 Links NCBI RGD Ensembl Show fit	ring finger protein 38
chr14_+_58877806 Show fit	0.02	ENSRNOT00000051559	RGD1562755 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L23a
chr15_+_18399733 Show fit	0.02	ENSRNOT00000061158	Fam107a Links NCBI RGD Ensembl Show fit	family with sequence similarity 107, member A
chr5_-_147846095 Show fit	0.02	ENSRNOT00000072165	Txlna Links NCBI RGD Ensembl Show fit	taxilin alpha
chr3_-_157099306 Show fit	0.02	ENSRNOT00000022861	Chd6 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 6
chr14_+_44580216 Show fit	0.02	ENSRNOT00000088674 ENSRNOT00000003907	Rfc1 Links NCBI RGD Ensembl Show fit	replication factor C subunit 1
chr17_-_6660536 Show fit	0.02	ENSRNOT00000025812	Rmi1 Links NCBI RGD Ensembl Show fit	RecQ mediated genome instability 1
chrX_+_92596378 Show fit	0.02	ENSRNOT00000045001	Pcdh11x Links NCBI RGD Ensembl Show fit	protocadherin 11 X-linked
chr6_-_42616548 Show fit	0.02	ENSRNOT00000081433	Atp6v1c2 Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V1 subunit C2
chr20_+_4363508 Show fit	0.02	ENSRNOT00000077205	Ager Links NCBI RGD Ensembl Show fit	advanced glycosylation end product-specific receptor
chrX_-_112473822 Show fit	0.02	ENSRNOT00000079180	Col4a6 Links NCBI RGD Ensembl Show fit	collagen type IV alpha 6 chain
chr2_+_41467064 Show fit	0.02	ENSRNOT00000073231	AABR07008066.2 Links NCBI RGD Ensembl Show fit
chr3_+_129599353 Show fit	0.02	ENSRNOT00000008734	Snap25 Links NCBI RGD Ensembl Show fit	synaptosomal-associated protein 25
chrX_-_1786978 Show fit	0.02	ENSRNOT00000011317	Rbm10 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 10
chr7_+_35070284 Show fit	0.02	ENSRNOT00000009578	Nr2c1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group C, member 1
chr7_-_144319804 Show fit	0.02	ENSRNOT00000070855	LOC100912282 Links NCBI RGD Ensembl Show fit	calcium-binding and coiled-coil domain-containing protein 1-like
chr18_+_28370085 Show fit	0.01	ENSRNOT00000083993	Matr3 Links NCBI RGD Ensembl Show fit	matrin 3
chrX_-_25628272 Show fit	0.01	ENSRNOT00000086414	Mid1 Links NCBI RGD Ensembl Show fit	midline 1
chr14_-_112946875 Show fit	0.01	ENSRNOT00000081981	LOC103690141 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 85A-like
chr15_+_18399515 Show fit	0.01	ENSRNOT00000071273	Fam107a Links NCBI RGD Ensembl Show fit	family with sequence similarity 107, member A
chr2_+_247248407 Show fit	0.01	ENSRNOT00000082287	Unc5c Links NCBI RGD Ensembl Show fit	unc-5 netrin receptor C
chr2_+_58462588 Show fit	0.01	ENSRNOT00000083799	Nadk2 Links NCBI RGD Ensembl Show fit	NAD kinase 2, mitochondrial
chr8_+_70603249 Show fit	0.01	ENSRNOT00000067016 ENSRNOT00000072486	Igdcc4 Links NCBI RGD Ensembl Show fit	immunoglobulin superfamily, DCC subclass, member 4
chr2_+_8732932 Show fit	0.01	ENSRNOT00000072849	Arrdc3 Links NCBI RGD Ensembl Show fit	arrestin domain containing 3
chrX_-_79909678 Show fit	0.01	ENSRNOT00000050336	Brwd3 Links NCBI RGD Ensembl Show fit	bromodomain and WD repeat domain containing 3
chr10_-_27366665 Show fit	0.01	ENSRNOT00000004725	Gabra1 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor alpha1 subunit
chr3_-_12467662 Show fit	0.01	ENSRNOT00000051893	Zbtb34 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 34
chr3_-_134696654 Show fit	0.01	ENSRNOT00000006454	Flrt3 Links NCBI RGD Ensembl Show fit	fibronectin leucine rich transmembrane protein 3
chr10_-_40953467 Show fit	0.01	ENSRNOT00000092189	Glra1 Links NCBI RGD Ensembl Show fit	glycine receptor, alpha 1
chr12_-_22726982 Show fit	0.01	ENSRNOT00000001921	Plod3 Links NCBI RGD Ensembl Show fit	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
chr3_-_175654707 Show fit	0.01	ENSRNOT00000080191	Rbbp8nl Links NCBI RGD Ensembl Show fit	RBBP8 N-terminal like
chr4_-_28224858 Show fit	0.01	ENSRNOT00000091075	AABR07059632.3 Links NCBI RGD Ensembl Show fit
chr6_+_10533151 Show fit	0.01	ENSRNOT00000020822	Rhoq Links NCBI RGD Ensembl Show fit	ras homolog family member Q
chr19_+_38669230 Show fit	0.01	ENSRNOT00000027273	Cdh3 Links NCBI RGD Ensembl Show fit	cadherin 3
chr6_-_75670135 Show fit	0.01	ENSRNOT00000007300	Snx6 Links NCBI RGD Ensembl Show fit	sorting nexin 6
chr8_+_107882219 Show fit	0.01	ENSRNOT00000019902	Dzip1l Links NCBI RGD Ensembl Show fit	DAZ interacting zinc finger protein 1-like
chr16_+_81665540 Show fit	0.01	ENSRNOT00000026546 ENSRNOT00000092644 ENSRNOT00000073240	Grtp1 Links NCBI RGD Ensembl Show fit	growth hormone regulated TBC protein 1
chr19_+_39067363 Show fit	0.01	ENSRNOT00000083515	Has3 Links NCBI RGD Ensembl Show fit	hyaluronan synthase 3
chr16_+_35934970 Show fit	0.01	ENSRNOT00000084707 ENSRNOT00000016474	Galnt7 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 7
chr14_-_81100803 Show fit	0.01	ENSRNOT00000014692	Msantd1 Links NCBI RGD Ensembl Show fit	Myb/SANT DNA binding domain containing 1
chr18_+_30808404 Show fit	0.01	ENSRNOT00000060475	Pcdhga1 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily A, 1
chrX_-_142164220 Show fit	0.01	ENSRNOT00000064780	Fgf13 Links NCBI RGD Ensembl Show fit	fibroblast growth factor 13
chr6_-_75874235 Show fit	0.01	ENSRNOT00000009080	Baz1a Links NCBI RGD Ensembl Show fit	bromodomain adjacent to zinc finger domain, 1A
chr5_+_122019301 Show fit	0.01	ENSRNOT00000068158	Pde4b Links NCBI RGD Ensembl Show fit	phosphodiesterase 4B
chr2_-_177950517 Show fit	0.01	ENSRNOT00000012792	Rapgef2 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 2
chr8_+_122076759 Show fit	0.00	ENSRNOT00000012545	Clasp2 Links NCBI RGD Ensembl Show fit	cytoplasmic linker associated protein 2
chr6_+_110410141 Show fit	0.00	ENSRNOT00000013867	Esrrb Links NCBI RGD Ensembl Show fit	estrogen-related receptor beta
chr5_+_154522119 Show fit	0.00	ENSRNOT00000072618	E2f2 Links NCBI RGD Ensembl Show fit	E2F transcription factor 2
chr5_-_128186532 Show fit	0.00	ENSRNOT00000012635	Prpf38a Links NCBI RGD Ensembl Show fit	pre-mRNA processing factor 38A
chr16_-_10603850 Show fit	0.00	ENSRNOT00000087737	Fam35a Links NCBI RGD Ensembl Show fit	family with sequence similarity 35, member A
chr2_-_211831551 Show fit	0.00	ENSRNOT00000039225 ENSRNOT00000090561	Fam102b Links NCBI RGD Ensembl Show fit	family with sequence similarity 102, member B
chr10_-_71849293 Show fit	0.00	ENSRNOT00000003799	Lhx1 Links NCBI RGD Ensembl Show fit	LIM homeobox 1
chr3_+_137618898 Show fit	0.00	ENSRNOT00000007249	Pcsk2 Links NCBI RGD Ensembl Show fit	proprotein convertase subtilisin/kexin type 2
chr7_-_143141589 Show fit	0.00	ENSRNOT00000068505 ENSRNOT00000077207	Kb23 Links NCBI RGD Ensembl Show fit	type II keratin 23
chr10_+_81913689 Show fit	0.00	ENSRNOT00000003780	Tob1 Links NCBI RGD Ensembl Show fit	transducer of ErbB-2.1
chr19_+_682065 Show fit	0.00	ENSRNOT00000087469	Terb1 Links NCBI RGD Ensembl Show fit	telomere repeat binding bouquet formation protein 1
chr7_+_123102493 Show fit	0.00	ENSRNOT00000038612	Aco2 Links NCBI RGD Ensembl Show fit	aconitase 2
chr4_+_163293724 Show fit	0.00	ENSRNOT00000077356	Gabarapl1 Links NCBI RGD Ensembl Show fit	GABA type A receptor associated protein like 1
chr18_+_29506128 Show fit	0.00	ENSRNOT00000003878	Slc35a4 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member A4
chr1_-_151106802 Show fit	0.00	ENSRNOT00000021971	Tyr Links NCBI RGD Ensembl Show fit	tyrosinase
chrX_+_128493614 Show fit	0.00	ENSRNOT00000044240	Stag2 Links NCBI RGD Ensembl Show fit	stromal antigen 2
chr7_+_27248115 Show fit	0.00	ENSRNOT00000031946 ENSRNOT00000059545	LOC362863 Links NCBI RGD Ensembl Show fit	first gene upstream of Nt5dc3
chr3_+_56802714 Show fit	0.00	ENSRNOT00000077551	Erich2 Links NCBI RGD Ensembl Show fit	glutamate-rich 2
chrX_+_20423401 Show fit	0.00	ENSRNOT00000093162	Wnk3 Links NCBI RGD Ensembl Show fit	WNK lysine deficient protein kinase 3
chr14_-_21127868 Show fit	0.00	ENSRNOT00000020608 ENSRNOT00000092172	Rufy3 Links NCBI RGD Ensembl Show fit	RUN and FYVE domain containing 3
chr2_-_157759819 Show fit	0.00	ENSRNOT00000015763 ENSRNOT00000016016	LOC100909712 Links NCBI RGD Ensembl Show fit	cyclin-L1-like
chr1_+_248195797 Show fit	0.00	ENSRNOT00000066891	LOC103690131 Links NCBI RGD Ensembl Show fit	tumor protein D55-like

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:1902412	regulation of mitotic cytokinesis(GO:1902412)