GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nr6a1 Links NCBI RGD Ensembl	ENSRNOG00000013232	nuclear receptor subfamily 6, group A, member 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nr6a1	rn6_v1_chr3_-_23066658_23066658	-0.13	8.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chrX_-_40086870 Show fit	0.07	ENSRNOT00000010027	Smpx Links NCBI RGD Ensembl Show fit	small muscle protein, X-linked
chr1_+_81365138 Show fit	0.04	ENSRNOT00000026793	Cadm4 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 4
chr20_-_5618254 Show fit	0.03	ENSRNOT00000092326 ENSRNOT00000000576	Bak1 Links NCBI RGD Ensembl Show fit	BCL2-antagonist/killer 1
chr1_+_78876205 Show fit	0.03	ENSRNOT00000022610	Pnmal2 Links NCBI RGD Ensembl Show fit	paraneoplastic Ma antigen family-like 2
chr5_-_61077627 Show fit	0.03	ENSRNOT00000015338	Shb Links NCBI RGD Ensembl Show fit	SH2 domain containing adaptor protein B
chr10_-_56429748 Show fit	0.03	ENSRNOT00000020675 ENSRNOT00000092704	Spem1 Links NCBI RGD Ensembl Show fit	spermatid maturation 1
chr9_+_9721105 Show fit	0.03	ENSRNOT00000073042 ENSRNOT00000075494	C3 Links NCBI RGD Ensembl Show fit	complement C3
chr12_+_22153983 Show fit	0.02	ENSRNOT00000080775 ENSRNOT00000001894	Pcolce Links NCBI RGD Ensembl Show fit	procollagen C-endopeptidase enhancer
chr7_-_11513415 Show fit	0.02	ENSRNOT00000082486	Thop1 Links NCBI RGD Ensembl Show fit	thimet oligopeptidase 1
chrX_-_123662350 Show fit	0.02	ENSRNOT00000092624	Sept6 Links NCBI RGD Ensembl Show fit	septin 6
chr18_-_16542165 Show fit	0.02	ENSRNOT00000079381	Slc39a6 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 6
chr14_+_108826831 Show fit	0.02	ENSRNOT00000083146 ENSRNOT00000009421	Bcl11a Links NCBI RGD Ensembl Show fit	B-cell CLL/lymphoma 11A
chr8_+_12160067 Show fit	0.02	ENSRNOT00000036338	Maml2 Links NCBI RGD Ensembl Show fit	mastermind-like transcriptional coactivator 2
chr12_-_30566032 Show fit	0.02	ENSRNOT00000093378	Gbas Links NCBI RGD Ensembl Show fit	glioblastoma amplified sequence
chr7_-_11513581 Show fit	0.02	ENSRNOT00000027045	Thop1 Links NCBI RGD Ensembl Show fit	thimet oligopeptidase 1
chr10_+_58875826 Show fit	0.02	ENSRNOT00000020071	Fbxo39 Links NCBI RGD Ensembl Show fit	F-box protein 39
chr11_+_64472072 Show fit	0.01	ENSRNOT00000042756	RGD1563835 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L27
chr20_-_4489281 Show fit	0.01	ENSRNOT00000031548	Cyp21a1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 21, subfamily a, polypeptide 1
chr13_-_91228901 Show fit	0.01	ENSRNOT00000071728 ENSRNOT00000073643 ENSRNOT00000071897	LOC100911825 Links NCBI RGD Ensembl Show fit	low affinity immunoglobulin gamma Fc region receptor III-like
chr9_-_85626094 Show fit	0.01	ENSRNOT00000020919	Serpine2 Links NCBI RGD Ensembl Show fit	serpin family E member 2
chr19_-_43215077 Show fit	0.01	ENSRNOT00000082151	Aars Links NCBI RGD Ensembl Show fit	alanyl-tRNA synthetase
chr1_-_218448813 Show fit	0.01	ENSRNOT00000017914 ENSRNOT00000054857	Tpcn2 Links NCBI RGD Ensembl Show fit	two pore segment channel 2
chr10_-_4249739 Show fit	0.01	ENSRNOT00000003150	Snx29 Links NCBI RGD Ensembl Show fit	sorting nexin 29
chr5_+_141560192 Show fit	0.01	ENSRNOT00000023354	Mycbp Links NCBI RGD Ensembl Show fit	Myc binding protein
chr5_-_5691794 Show fit	0.01	ENSRNOT00000089152	AABR07046763.1 Links NCBI RGD Ensembl Show fit
chr13_+_49277722 Show fit	0.01	ENSRNOT00000035335	Tmem81 Links NCBI RGD Ensembl Show fit	transmembrane protein 81
chr19_+_14523554 Show fit	0.01	ENSRNOT00000084271 ENSRNOT00000064731	Mcm5 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 5
chr6_-_47890033 Show fit	0.01	ENSRNOT00000011290	Colec11 Links NCBI RGD Ensembl Show fit	collectin sub-family member 11
chr10_+_71202456 Show fit	0.01	ENSRNOT00000076893	Hnf1b Links NCBI RGD Ensembl Show fit	HNF1 homeobox B
chr13_+_78805347 Show fit	0.01	ENSRNOT00000003748	Serpinc1 Links NCBI RGD Ensembl Show fit	serpin family C member 1
chr8_+_106317124 Show fit	0.01	ENSRNOT00000018411	Nmnat3 Links NCBI RGD Ensembl Show fit	nicotinamide nucleotide adenylyltransferase 3
chr7_+_120755516 Show fit	0.01	ENSRNOT00000056169	Kdelr3 Links NCBI RGD Ensembl Show fit	KDEL endoplasmic reticulum protein retention receptor 3
chr3_-_2534663 Show fit	0.01	ENSRNOT00000049297 ENSRNOT00000044246	Grin1 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor NMDA type subunit 1
chr18_+_56044369 Show fit	0.01	ENSRNOT00000059501	Rps14 Links NCBI RGD Ensembl Show fit	ribosomal protein S14
chr17_+_77185053 Show fit	0.01	ENSRNOT00000091561	Optn Links NCBI RGD Ensembl Show fit	optineurin
chr20_+_48881194 Show fit	0.01	ENSRNOT00000000304	Rtn4ip1 Links NCBI RGD Ensembl Show fit	reticulon 4 interacting protein 1
chr10_-_62184874 Show fit	0.01	ENSRNOT00000004229	Rpa1 Links NCBI RGD Ensembl Show fit	replication protein A1
chr18_+_29587901 Show fit	0.01	ENSRNOT00000085470	Wdr55 Links NCBI RGD Ensembl Show fit	WD repeat domain 55
chr7_+_2458264 Show fit	0.01	ENSRNOT00000003550	Naca Links NCBI RGD Ensembl Show fit	nascent polypeptide-associated complex alpha subunit
chr5_+_115649046 Show fit	0.01	ENSRNOT00000041328	LOC108351137 Links NCBI RGD Ensembl Show fit	glyceraldehyde-3-phosphate dehydrogenase
chr11_-_71387992 Show fit	0.01	ENSRNOT00000002411	Tnk2 Links NCBI RGD Ensembl Show fit	tyrosine kinase, non-receptor, 2
chr7_-_12519154 Show fit	0.01	ENSRNOT00000093376 ENSRNOT00000077681	Gpx4 Links NCBI RGD Ensembl Show fit	glutathione peroxidase 4
chr4_-_179477070 Show fit	0.01	ENSRNOT00000030680	Casc1 Links NCBI RGD Ensembl Show fit	cancer susceptibility candidate 1
chr6_+_107531528 Show fit	0.01	ENSRNOT00000077555	Acot3 Links NCBI RGD Ensembl Show fit	acyl-CoA thioesterase 3
chr1_-_260254600 Show fit	0.01	ENSRNOT00000019014	Blnk Links NCBI RGD Ensembl Show fit	B-cell linker
chr12_-_11785493 Show fit	0.01	ENSRNOT00000039687	Zfp498 Links NCBI RGD Ensembl Show fit	zinc finger protein 498
chr1_+_85460888 Show fit	0.01	ENSRNOT00000093384	Supt5h Links NCBI RGD Ensembl Show fit	SPT5 homolog, DSIF elongation factor subunit
chrX_+_22788660 Show fit	0.00	ENSRNOT00000071886	AABR07037510.1 Links NCBI RGD Ensembl Show fit
chr7_+_11724962 Show fit	0.00	ENSRNOT00000026551	Lsm7 Links NCBI RGD Ensembl Show fit	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
chr7_-_11724843 Show fit	0.00	ENSRNOT00000084144	Sppl2b Links NCBI RGD Ensembl Show fit	signal peptide peptidase-like 2B
chr1_-_170404056 Show fit	0.00	ENSRNOT00000024402	Apbb1 Links NCBI RGD Ensembl Show fit	amyloid beta precursor protein binding family B member 1
chr20_+_21316826 Show fit	0.00	ENSRNOT00000000785	RGD1306739 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1700040L02
chr11_+_73930753 Show fit	0.00	ENSRNOT00000087747	RGD1562415 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S26
chr1_+_218532045 Show fit	0.00	ENSRNOT00000018848	Mrpl21 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L21
chrX_+_40460047 Show fit	0.00	ENSRNOT00000010970	Phex Links NCBI RGD Ensembl Show fit	phosphate regulating endopeptidase homolog, X-linked
chr7_+_73273985 Show fit	0.00	ENSRNOT00000077730	Pop1 Links NCBI RGD Ensembl Show fit	POP1 homolog, ribonuclease P/MRP subunit
chr16_+_1979191 Show fit	0.00	ENSRNOT00000014382	Ppif Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase F
chr1_+_167197549 Show fit	0.00	ENSRNOT00000027427	Art1 Links NCBI RGD Ensembl Show fit	ADP-ribosyltransferase 1
chr13_-_89433815 Show fit	0.00	ENSRNOT00000091541	Fcgr2b Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor IIb
chr8_-_59226597 Show fit	0.00	ENSRNOT00000088208	Acsbg1 Links NCBI RGD Ensembl Show fit	acyl-CoA synthetase bubblegum family member 1
chr12_-_30180115 Show fit	0.00	ENSRNOT00000001202	Crcp Links NCBI RGD Ensembl Show fit	CGRP receptor component
chr1_-_183630695 Show fit	0.00	ENSRNOT00000036330	AABR07005506.1 Links NCBI RGD Ensembl Show fit
chr3_+_139894331 Show fit	0.00	ENSRNOT00000064695	Rin2 Links NCBI RGD Ensembl Show fit	Ras and Rab interactor 2
chr8_+_80662762 Show fit	0.00	ENSRNOT00000057689	LOC100912027 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L27-like
chr5_-_150987081 Show fit	0.00	ENSRNOT00000017340	Themis2 Links NCBI RGD Ensembl Show fit	thymocyte selection associated family member 2
chr13_-_56958549 Show fit	0.00	ENSRNOT00000017293 ENSRNOT00000083912	RGD1564614 Links NCBI RGD Ensembl Show fit	similar to complement factor H-related protein
chr4_+_56591715 Show fit	0.00	ENSRNOT00000041207	Fam71f1 Links NCBI RGD Ensembl Show fit	family with sequence similarity 71, member F1
chr6_-_107325345 Show fit	0.00	ENSRNOT00000049481 ENSRNOT00000042594 ENSRNOT00000013026	Numb Links NCBI RGD Ensembl Show fit	NUMB, endocytic adaptor protein
chr7_+_2504695 Show fit	0.00	ENSRNOT00000003965	Atp5b Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
chr4_+_86125316 Show fit	0.00	ENSRNOT00000045930	Ccdc129 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 129
chr9_+_40975836 Show fit	0.00	ENSRNOT00000084470	Ptpn18 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 18
chr4_+_170958196 Show fit	0.00	ENSRNOT00000007905	Pde6h Links NCBI RGD Ensembl Show fit	phosphodiesterase 6H
chr15_-_27997810 Show fit	0.00	ENSRNOT00000034647	Olr1637 Links NCBI RGD Ensembl Show fit	olfactory receptor 1637
chr7_+_114997103 Show fit	0.00	ENSRNOT00000010224	Ptp4a3 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase type IVA, member 3
chr6_+_136084605 Show fit	0.00	ENSRNOT00000092806	Mark3 Links NCBI RGD Ensembl Show fit	microtubule affinity regulating kinase 3
chr12_+_22727335 Show fit	0.00	ENSRNOT00000077293	Znhit1 Links NCBI RGD Ensembl Show fit	zinc finger, HIT-type containing 1
chr10_-_74388787 Show fit	0.00	ENSRNOT00000008107	Smg8 Links NCBI RGD Ensembl Show fit	SMG8 nonsense mediated mRNA decay factor
chr1_-_220787238 Show fit	0.00	ENSRNOT00000083656	Tsga10ip Links NCBI RGD Ensembl Show fit	testis specific 10 interacting protein
chr6_+_55085313 Show fit	0.00	ENSRNOT00000005458	AABR07063901.1 Links NCBI RGD Ensembl Show fit
chr9_-_30251388 Show fit	0.00	ENSRNOT00000035033	Sdhaf4 Links NCBI RGD Ensembl Show fit	succinate dehydrogenase complex assembly factor 4
chr12_+_41486076 Show fit	0.00	ENSRNOT00000057242	Rita1 Links NCBI RGD Ensembl Show fit	RBPJ interacting and tubulin associated 1
chr8_+_131845696 Show fit	0.00	ENSRNOT00000005440	Tcaim Links NCBI RGD Ensembl Show fit	T cell activation inhibitor, mitochondrial
chr8_-_130475320 Show fit	0.00	ENSRNOT00000075439	Ccdc13 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 13
chr8_-_76239995 Show fit	0.00	ENSRNOT00000071321	LOC100912027 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L27-like

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Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005927	muscle tendon junction(GO:0005927)