GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Pax4 Links NCBI RGD Ensembl	ENSRNOG00000008020	paired box 4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pax4	rn6_v1_chr4_-_55740627_55740627	-0.35	5.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_+_79823945 Show fit	0.15	ENSRNOT00000014484	Celf1 Links NCBI RGD Ensembl Show fit	CUGBP, Elav-like family member 1
chr9_+_20765296 Show fit	0.09	ENSRNOT00000016291	Cd2ap Links NCBI RGD Ensembl Show fit	CD2-associated protein
chr13_-_45318822 Show fit	0.09	ENSRNOT00000091514 ENSRNOT00000005143	Cxcr4 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine receptor 4
chr6_-_108796124 Show fit	0.08	ENSRNOT00000086545	Arel1 Links NCBI RGD Ensembl Show fit	apoptosis resistant E3 ubiquitin protein ligase 1
chr16_-_9709347 Show fit	0.07	ENSRNOT00000083933	Mapk8 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 8
chr20_+_13940877 Show fit	0.07	ENSRNOT00000093587	Cabin1 Links NCBI RGD Ensembl Show fit	calcineurin binding protein 1
chr4_-_152883210 Show fit	0.07	ENSRNOT00000056200	Ccdc77 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 77
chrX_+_128416722 Show fit	0.07	ENSRNOT00000009336 ENSRNOT00000085110	Xiap Links NCBI RGD Ensembl Show fit	X-linked inhibitor of apoptosis
chr3_-_148932878 Show fit	0.07	ENSRNOT00000013881	Nol4l Links NCBI RGD Ensembl Show fit	nucleolar protein 4-like
chr18_-_74485139 Show fit	0.06	ENSRNOT00000022598	Slc14a1 Links NCBI RGD Ensembl Show fit	solute carrier family 14 member 1
chr18_-_57245666 Show fit	0.06	ENSRNOT00000080365	Ablim3 Links NCBI RGD Ensembl Show fit	actin binding LIM protein family, member 3
chr3_-_71845232 Show fit	0.06	ENSRNOT00000078645	Calcrl Links NCBI RGD Ensembl Show fit	calcitonin receptor like receptor
chr13_-_80775230 Show fit	0.06	ENSRNOT00000091389 ENSRNOT00000004762	Fmo2 Links NCBI RGD Ensembl Show fit	flavin containing monooxygenase 2
chr8_+_70317586 Show fit	0.05	ENSRNOT00000016260	Dennd4a Links NCBI RGD Ensembl Show fit	DENN domain containing 4A
chr2_-_22798214 Show fit	0.05	ENSRNOT00000016135	Papd4 Links NCBI RGD Ensembl Show fit	poly(A) RNA polymerase D4, non-canonical
chr3_-_113438801 Show fit	0.05	ENSRNOT00000091665	Mfap1a Links NCBI RGD Ensembl Show fit	microfibrillar-associated protein 1A
chrX_-_152642531 Show fit	0.05	ENSRNOT00000085037	Gabra3 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor alpha3 subunit
chr14_-_112946204 Show fit	0.05	ENSRNOT00000056813	LOC103690141 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 85A-like
chrX_-_70428364 Show fit	0.05	ENSRNOT00000045907	P2ry4 Links NCBI RGD Ensembl Show fit	pyrimidinergic receptor P2Y4
chr14_+_8182383 Show fit	0.05	ENSRNOT00000092719	Mapk10 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase 10
chr10_+_90984227 Show fit	0.05	ENSRNOT00000003890 ENSRNOT00000093707	Ccdc103 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 103
chr1_+_264309214 Show fit	0.04	ENSRNOT00000019070	Hif1an Links NCBI RGD Ensembl Show fit	hypoxia-inducible factor 1, alpha subunit inhibitor
chr3_-_66417741 Show fit	0.04	ENSRNOT00000007662	Neurod1 Links NCBI RGD Ensembl Show fit	neuronal differentiation 1
chr3_-_162579201 Show fit	0.04	ENSRNOT00000068328	Zmynd8 Links NCBI RGD Ensembl Show fit	zinc finger, MYND-type containing 8
chr1_+_105285419 Show fit	0.04	ENSRNOT00000089693	Slc6a5 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 5
chrM_+_11736 Show fit	0.04	ENSRNOT00000048767	Mt-nd5 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 5
chr1_+_252894663 Show fit	0.04	ENSRNOT00000054757	Ifit2 Links NCBI RGD Ensembl Show fit	interferon-induced protein with tetratricopeptide repeats 2
chr14_+_39663421 Show fit	0.04	ENSRNOT00000003197	Gabra2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor alpha2 subunit
chr1_+_81779380 Show fit	0.04	ENSRNOT00000065865 ENSRNOT00000080143 ENSRNOT00000089592 ENSRNOT00000080840	Arhgef1 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 1
chr6_-_50941248 Show fit	0.04	ENSRNOT00000084533	Dus4l Links NCBI RGD Ensembl Show fit	dihydrouridine synthase 4-like
chr7_+_97559841 Show fit	0.03	ENSRNOT00000007326	Zhx2 Links NCBI RGD Ensembl Show fit	zinc fingers and homeoboxes 2
chr5_+_6373583 Show fit	0.03	ENSRNOT00000084749	AABR07046778.1 Links NCBI RGD Ensembl Show fit
chr7_-_140437467 Show fit	0.03	ENSRNOT00000087181	Fkbp11 Links NCBI RGD Ensembl Show fit	FK506 binding protein 11
chr8_+_12823155 Show fit	0.03	ENSRNOT00000011008	Sesn3 Links NCBI RGD Ensembl Show fit	sestrin 3
chr3_-_51297852 Show fit	0.03	ENSRNOT00000001607	Cobll1 Links NCBI RGD Ensembl Show fit	cordon-bleu WH2 repeat protein-like 1
chr7_+_117605050 Show fit	0.03	ENSRNOT00000047380	Slc52a2 Links NCBI RGD Ensembl Show fit	solute carrier family 52 member 2
chr7_-_120295618 Show fit	0.03	ENSRNOT00000014413	Ankrd54 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 54
chrM_+_9870 Show fit	0.03	ENSRNOT00000044582	Mt-nd4l Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH 4L dehydrogenase
chr14_-_103321270 Show fit	0.03	ENSRNOT00000006157	Meis1 Links NCBI RGD Ensembl Show fit	Meis homeobox 1
chr15_-_42947656 Show fit	0.03	ENSRNOT00000030007	Ptk2b Links NCBI RGD Ensembl Show fit	protein tyrosine kinase 2 beta
chr7_-_117605141 Show fit	0.03	ENSRNOT00000035199	Fbxl6 Links NCBI RGD Ensembl Show fit	F-box and leucine-rich repeat protein 6
chr12_-_37411525 Show fit	0.03	ENSRNOT00000087698	Tctn2 Links NCBI RGD Ensembl Show fit	tectonic family member 2
chr14_+_99919485 Show fit	0.02	ENSRNOT00000006087	Egfr Links NCBI RGD Ensembl Show fit	epidermal growth factor receptor
chr8_-_53901358 Show fit	0.02	ENSRNOT00000047666 ENSRNOT00000042281	Ncam1 Links NCBI RGD Ensembl Show fit	neural cell adhesion molecule 1
chr1_+_116604550 Show fit	0.02	ENSRNOT00000083587	Ube3a Links NCBI RGD Ensembl Show fit	ubiquitin protein ligase E3A
chr20_-_6257604 Show fit	0.02	ENSRNOT00000092489	Stk38 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 38
chr3_-_92749121 Show fit	0.02	ENSRNOT00000008760	Cd44 Links NCBI RGD Ensembl Show fit	CD44 molecule (Indian blood group)
chr20_-_1878126 Show fit	0.02	ENSRNOT00000000995	Ubd Links NCBI RGD Ensembl Show fit	ubiquitin D
chr12_-_11176106 Show fit	0.02	ENSRNOT00000090073	Zkscan5 Links NCBI RGD Ensembl Show fit	zinc finger with KRAB and SCAN domains 5
chr1_-_221370322 Show fit	0.02	ENSRNOT00000028431	Capn1 Links NCBI RGD Ensembl Show fit	calpain 1
chr12_-_11175917 Show fit	0.02	ENSRNOT00000079573	Zkscan5 Links NCBI RGD Ensembl Show fit	zinc finger with KRAB and SCAN domains 5
chr15_+_43298794 Show fit	0.02	ENSRNOT00000012736	Adra1a Links NCBI RGD Ensembl Show fit	adrenoceptor alpha 1A
chr15_-_6587367 Show fit	0.02	ENSRNOT00000038449	Zfp385d Links NCBI RGD Ensembl Show fit	zinc finger protein 385D
chrX_-_116792707 Show fit	0.02	ENSRNOT00000049482	Amot Links NCBI RGD Ensembl Show fit	angiomotin
chr20_-_4401610 Show fit	0.02	ENSRNOT00000091468	Ppt2 Links NCBI RGD Ensembl Show fit	palmitoyl-protein thioesterase 2
chr3_+_94530586 Show fit	0.02	ENSRNOT00000067860	Cstf3 Links NCBI RGD Ensembl Show fit	cleavage stimulation factor subunit 3
chr7_+_37018459 Show fit	0.02	ENSRNOT00000087297	Eea1 Links NCBI RGD Ensembl Show fit	early endosome antigen 1
chr7_-_101140308 Show fit	0.02	ENSRNOT00000006279	Fam84b Links NCBI RGD Ensembl Show fit	family with sequence similarity 84, member B
chr5_+_148781222 Show fit	0.02	ENSRNOT00000015831	Pum1 Links NCBI RGD Ensembl Show fit	pumilio RNA-binding family member 1
chr9_-_10471009 Show fit	0.02	ENSRNOT00000072868	Safb Links NCBI RGD Ensembl Show fit	scaffold attachment factor B
chr11_-_57993548 Show fit	0.01	ENSRNOT00000002957	Nectin3 Links NCBI RGD Ensembl Show fit	nectin cell adhesion molecule 3
chr12_-_44999074 Show fit	0.01	ENSRNOT00000079177 ENSRNOT00000038293	Vsig10 Links NCBI RGD Ensembl Show fit	V-set and immunoglobulin domain containing 10
chr7_-_114573900 Show fit	0.01	ENSRNOT00000011219	Ptk2 Links NCBI RGD Ensembl Show fit	protein tyrosine kinase 2
chr1_-_248376750 Show fit	0.01	ENSRNOT00000089073	Gldc Links NCBI RGD Ensembl Show fit	glycine decarboxylase
chr7_-_119689938 Show fit	0.01	ENSRNOT00000000200	Tmprss6 Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 6
chr18_-_81682206 Show fit	0.01	ENSRNOT00000058219	LOC100359752 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC100359752
chr8_-_67040005 Show fit	0.01	ENSRNOT00000038641	Glce Links NCBI RGD Ensembl Show fit	glucuronic acid epimerase
chr1_+_80092403 Show fit	0.01	ENSRNOT00000078336	Eml2 Links NCBI RGD Ensembl Show fit	echinoderm microtubule associated protein like 2
chr20_-_44255064 Show fit	0.01	ENSRNOT00000000735	Wisp3 Links NCBI RGD Ensembl Show fit	WNT1 inducible signaling pathway protein 3
chr20_-_5076539 Show fit	0.01	ENSRNOT00000076253 ENSRNOT00000037613	Ly6g6f Links NCBI RGD Ensembl Show fit	lymphocyte antigen 6 complex, locus G6F
chr6_+_28235695 Show fit	0.01	ENSRNOT00000047210	Dnmt3a Links NCBI RGD Ensembl Show fit	DNA methyltransferase 3 alpha
chr13_+_49005405 Show fit	0.01	ENSRNOT00000092560 ENSRNOT00000076457	Lemd1 Links NCBI RGD Ensembl Show fit	LEM domain containing 1
chr8_+_107508351 Show fit	0.01	ENSRNOT00000081594	Cep70 Links NCBI RGD Ensembl Show fit	centrosomal protein 70
chr4_+_110699557 Show fit	0.01	ENSRNOT00000030588 ENSRNOT00000092261	Lrrtm4 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 4
chrX_+_105537602 Show fit	0.01	ENSRNOT00000029833	Armcx1 Links NCBI RGD Ensembl Show fit	armadillo repeat containing, X-linked 1
chr12_+_40244081 Show fit	0.01	ENSRNOT00000030583	Sh2b3 Links NCBI RGD Ensembl Show fit	SH2B adaptor protein 3
chr4_-_158704170 Show fit	0.01	ENSRNOT00000082009	Ntf3 Links NCBI RGD Ensembl Show fit	neurotrophin 3
chrM_+_3904 Show fit	0.01	ENSRNOT00000040993	Mt-nd2 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 2
chr6_-_103313074 Show fit	0.01	ENSRNOT00000083677	Zfp36l1 Links NCBI RGD Ensembl Show fit	zinc finger protein 36, C3H type-like 1
chr18_+_60392376 Show fit	0.00	ENSRNOT00000023890	Nedd4l Links NCBI RGD Ensembl Show fit	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
chr13_-_53108713 Show fit	0.00	ENSRNOT00000035404	RGD1311892 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ10901
chr13_+_90301006 Show fit	0.00	ENSRNOT00000029315	Slamf6 Links NCBI RGD Ensembl Show fit	SLAM family member 6
chr1_+_273854248 Show fit	0.00	ENSRNOT00000044827 ENSRNOT00000017600 ENSRNOT00000086496	Add3 Links NCBI RGD Ensembl Show fit	adducin 3
chr16_-_62164135 Show fit	0.00	ENSRNOT00000058872	Gtf2e2 Links NCBI RGD Ensembl Show fit	general transcription factor IIE subunit 2
chr18_+_30527705 Show fit	0.00	ENSRNOT00000027168	Pcdhb14 Links NCBI RGD Ensembl Show fit	protocadherin beta 14
chr10_-_25845634 Show fit	0.00	ENSRNOT00000004269	Mat2b Links NCBI RGD Ensembl Show fit	methionine adenosyltransferase 2B
chr5_+_117583502 Show fit	0.00	ENSRNOT00000010933	Usp1 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1902595	regulation of DNA replication origin binding(GO:1902595)
0.0	0.1	GO:0032911	negative regulation of transforming growth factor beta1 production(GO:0032911)
0.0	0.1	GO:1990478	positive regulation of vascular wound healing(GO:0035470) response to ultrasound(GO:1990478)
0.0	0.1	GO:0071918	urea transmembrane transport(GO:0071918)
0.0	0.1	GO:0072592	oxygen metabolic process(GO:0072592)
0.0	0.1	GO:0097039	protein linear polyubiquitination(GO:0097039)
0.0	0.0	GO:0007172	signal complex assembly(GO:0007172)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0015265	urea channel activity(GO:0015265)
0.0	0.1	GO:0001605	adrenomedullin receptor activity(GO:0001605)
0.0	0.1	GO:0000827	inositol-1,3,4,5,6-pentakisphosphate kinase activity(GO:0000827)
0.0	0.1	GO:0015065	uridine nucleotide receptor activity(GO:0015065) G-protein coupled pyrimidinergic nucleotide receptor activity(GO:0071553)
0.0	0.1	GO:0032027	myosin light chain binding(GO:0032027)
0.0	0.0	GO:0005294	neutral L-amino acid secondary active transmembrane transporter activity(GO:0005294)
0.0	0.1	GO:0004705	JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME BINDING AND ENTRY OF HIV VIRION	Genes involved in Binding and entry of HIV virion