GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Pax7 Links NCBI RGD Ensembl	ENSRNOG00000018739	paired box 7

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pax7	rn6_v1_chr5_-_158313426_158313426	-0.48	4.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_127525285 Show fit	0.03	ENSRNOT00000093247	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr1_-_190370499 Show fit	0.03	ENSRNOT00000084389	AABR07005618.1 Links NCBI RGD Ensembl Show fit
chr18_-_55891710 Show fit	0.03	ENSRNOT00000064686	Synpo Links NCBI RGD Ensembl Show fit	synaptopodin
chr5_+_139790395 Show fit	0.03	ENSRNOT00000015033	Rims3 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 3
chr12_-_45801842 Show fit	0.03	ENSRNOT00000078837	AABR07036513.1 Links NCBI RGD Ensembl Show fit
chr20_-_13994794 Show fit	0.02	ENSRNOT00000093466	Ggt5 Links NCBI RGD Ensembl Show fit	gamma-glutamyltransferase 5
chr3_+_14889510 Show fit	0.02	ENSRNOT00000080760	Dab2ip Links NCBI RGD Ensembl Show fit	DAB2 interacting protein
chr10_-_88670430 Show fit	0.02	ENSRNOT00000025547	Hcrt Links NCBI RGD Ensembl Show fit	hypocretin neuropeptide precursor
chr4_-_18396035 Show fit	0.02	ENSRNOT00000034692	Sema3a Links NCBI RGD Ensembl Show fit	semaphorin 3A
chr2_+_104020955 Show fit	0.02	ENSRNOT00000045586	Mtfr1 Links NCBI RGD Ensembl Show fit	mitochondrial fission regulator 1
chr10_-_74679858 Show fit	0.02	ENSRNOT00000003859	Ppm1e Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1E
chr10_-_67401836 Show fit	0.01	ENSRNOT00000073071	Crlf3 Links NCBI RGD Ensembl Show fit	cytokine receptor-like factor 3
chr2_-_33025271 Show fit	0.01	ENSRNOT00000074941	NEWGENE_1310139 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr19_-_22194740 Show fit	0.01	ENSRNOT00000086187	Phkb Links NCBI RGD Ensembl Show fit	phosphorylase kinase regulatory subunit beta
chr8_-_84506328 Show fit	0.01	ENSRNOT00000064754	Mlip Links NCBI RGD Ensembl Show fit	muscular LMNA-interacting protein
chr16_+_9023387 Show fit	0.01	ENSRNOT00000067761	RGD1561145 Links NCBI RGD Ensembl Show fit	similar to novel protein
chr13_-_111581018 Show fit	0.01	ENSRNOT00000083072 ENSRNOT00000077981	Sertad4 Links NCBI RGD Ensembl Show fit	SERTA domain containing 4
chr2_-_35870578 Show fit	0.01	ENSRNOT00000066069	Rnf180 Links NCBI RGD Ensembl Show fit	ring finger protein 180
chr12_-_35979193 Show fit	0.01	ENSRNOT00000071104	Tmem132b Links NCBI RGD Ensembl Show fit	transmembrane protein 132B
chr3_-_90751055 Show fit	0.01	ENSRNOT00000040741	LOC499843 Links NCBI RGD Ensembl Show fit	LRRGT00091
chr7_-_15073052 Show fit	0.01	ENSRNOT00000037708	Zfp799 Links NCBI RGD Ensembl Show fit	zinc finger protein 799
chr9_+_71915421 Show fit	0.01	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr4_+_88694583 Show fit	0.01	ENSRNOT00000009202	Ppm1k Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1K
chr4_-_119327822 Show fit	0.01	ENSRNOT00000012645	Arhgap25 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 25
chr4_-_55011415 Show fit	0.01	ENSRNOT00000056996	Grm8 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 8
chr4_-_183424449 Show fit	0.01	ENSRNOT00000071930	Fam60a Links NCBI RGD Ensembl Show fit	family with sequence similarity 60, member A
chr7_+_2752680 Show fit	0.01	ENSRNOT00000033726	Cs Links NCBI RGD Ensembl Show fit	citrate synthase
chr5_+_28485619 Show fit	0.01	ENSRNOT00000093341 ENSRNOT00000093129	LOC100912373 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100912373
chr14_-_16903242 Show fit	0.01	ENSRNOT00000003001	Shroom3 Links NCBI RGD Ensembl Show fit	shroom family member 3
chr9_-_30844199 Show fit	0.01	ENSRNOT00000017169	Col19a1 Links NCBI RGD Ensembl Show fit	collagen type XIX alpha 1 chain
chr10_-_65502936 Show fit	0.01	ENSRNOT00000089615	Supt6h Links NCBI RGD Ensembl Show fit	SPT6 homolog, histone chaperone
chr8_-_39551700 Show fit	0.00	ENSRNOT00000091894 ENSRNOT00000076025	Pknox2 Links NCBI RGD Ensembl Show fit	PBX/knotted 1 homeobox 2
chr11_-_62067655 Show fit	0.00	ENSRNOT00000093382	Zbtb20 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 20
chr13_-_76049363 Show fit	0.00	ENSRNOT00000075865 ENSRNOT00000007455	Brinp2 Links NCBI RGD Ensembl Show fit	BMP/retinoic acid inducible neural specific 2
chr1_+_101554642 Show fit	0.00	ENSRNOT00000028474	Bcat2 Links NCBI RGD Ensembl Show fit	branched chain amino acid transaminase 2
chr19_+_39229754 Show fit	0.00	ENSRNOT00000050612	Vps4a Links NCBI RGD Ensembl Show fit	vacuolar protein sorting 4 homolog A
chr13_+_91054974 Show fit	0.00	ENSRNOT00000091089	Crp Links NCBI RGD Ensembl Show fit	C-reactive protein
chr6_+_101532518 Show fit	0.00	ENSRNOT00000075054	Gphn Links NCBI RGD Ensembl Show fit	gephyrin
chr1_+_80141630 Show fit	0.00	ENSRNOT00000029552	Opa3 Links NCBI RGD Ensembl Show fit	optic atrophy 3
chr16_+_60925093 Show fit	0.00	ENSRNOT00000015813	Tnks Links NCBI RGD Ensembl Show fit	tankyrase
chr10_-_103826448 Show fit	0.00	ENSRNOT00000085636	Fdxr Links NCBI RGD Ensembl Show fit	ferredoxin reductase
chr7_-_28711761 Show fit	0.00	ENSRNOT00000006249	Parpbp Links NCBI RGD Ensembl Show fit	PARP1 binding protein
chr6_-_108660063 Show fit	0.00	ENSRNOT00000006240	Arel1 Links NCBI RGD Ensembl Show fit	apoptosis resistant E3 ubiquitin protein ligase 1
chrX_+_118197217 Show fit	0.00	ENSRNOT00000090922	Htr2c Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 2C
chr18_+_79773608 Show fit	0.00	ENSRNOT00000088484	Zfp516 Links NCBI RGD Ensembl Show fit	zinc finger protein 516
chr12_+_47590154 Show fit	0.00	ENSRNOT00000045946	Git2 Links NCBI RGD Ensembl Show fit	GIT ArfGAP 2
chr1_-_233145924 Show fit	0.00	ENSRNOT00000018763 ENSRNOT00000082442	Psat1 Links NCBI RGD Ensembl Show fit	phosphoserine aminotransferase 1
chr2_+_66940057 Show fit	0.00	ENSRNOT00000043050	Cdh9 Links NCBI RGD Ensembl Show fit	cadherin 9
chr7_-_143967484 Show fit	0.00	ENSRNOT00000081758	Sp7 Links NCBI RGD Ensembl Show fit	Sp7 transcription factor
chr11_-_61234944 Show fit	0.00	ENSRNOT00000059680	Cfap44 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 44
chr2_-_122646445 Show fit	0.00	ENSRNOT00000080100	Dcun1d1 Links NCBI RGD Ensembl Show fit	defective in cullin neddylation 1 domain containing 1
chr4_+_180291389 Show fit	0.00	ENSRNOT00000002465	Sspn Links NCBI RGD Ensembl Show fit	sarcospan
chr9_+_60039297 Show fit	0.00	ENSRNOT00000016262	Slc39a10 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 10
chrX_-_104932508 Show fit	0.00	ENSRNOT00000075325	Nox1 Links NCBI RGD Ensembl Show fit	NADPH oxidase 1
chr4_+_156253079 Show fit	0.00	ENSRNOT00000013536	Clec4d Links NCBI RGD Ensembl Show fit	C-type lectin domain family 4, member D
chr8_+_22966561 Show fit	0.00	ENSRNOT00000016819	Swsap1 Links NCBI RGD Ensembl Show fit	SWIM-type zinc finger 7 associated protein 1
chr7_+_78558701 Show fit	0.00	ENSRNOT00000006393	Rims2 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 2
chr6_+_145546595 Show fit	0.00	ENSRNOT00000007112	Rapgef5 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 5
chr8_+_22966792 Show fit	0.00	ENSRNOT00000064580	Swsap1 Links NCBI RGD Ensembl Show fit	SWIM-type zinc finger 7 associated protein 1
chr7_-_64887448 Show fit	0.00	ENSRNOT00000038147	Helb Links NCBI RGD Ensembl Show fit	DNA helicase B
chr10_-_87153982 Show fit	0.00	ENSRNOT00000014414	Krt222 Links NCBI RGD Ensembl Show fit	keratin 222
chr2_+_202200797 Show fit	0.00	ENSRNOT00000042263 ENSRNOT00000071938	Spag17 Links NCBI RGD Ensembl Show fit	sperm associated antigen 17
chr18_+_28594892 Show fit	0.00	ENSRNOT00000067702	Ube2d2 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2D 2

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