GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Pax8 Links NCBI RGD Ensembl	ENSRNOG00000026203	paired box 8

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pax8	rn6_v1_chr3_-_1584946_1584946	-0.20	7.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_227047290 Show fit	0.13	ENSRNOT00000037226	Ms4a15 Links NCBI RGD Ensembl Show fit	membrane spanning 4-domains A15
chr2_-_231409988 Show fit	0.08	ENSRNOT00000080637 ENSRNOT00000037255 ENSRNOT00000074002	Ank2 Links NCBI RGD Ensembl Show fit	ankyrin 2
chr20_-_6548179 Show fit	0.07	ENSRNOT00000093711	Lemd2 Links NCBI RGD Ensembl Show fit	LEM domain containing 2
chr5_-_164585634 Show fit	0.07	ENSRNOT00000065985	Mfn2 Links NCBI RGD Ensembl Show fit	mitofusin 2
chr1_-_87777359 Show fit	0.06	ENSRNOT00000074090	AABR07002870.1 Links NCBI RGD Ensembl Show fit
chr17_-_36438752 Show fit	0.06	ENSRNOT00000048997	RGD1561310 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L37
chr17_+_76532611 Show fit	0.06	ENSRNOT00000024099	Camk1d Links NCBI RGD Ensembl Show fit	calcium/calmodulin-dependent protein kinase ID
chr5_+_19284548 Show fit	0.05	ENSRNOT00000012551	Ubxn2b Links NCBI RGD Ensembl Show fit	UBX domain protein 2B
chr1_-_87777668 Show fit	0.05	ENSRNOT00000037288	AABR07002870.1 Links NCBI RGD Ensembl Show fit
chr8_-_114010277 Show fit	0.05	ENSRNOT00000045087	Atp2c1 Links NCBI RGD Ensembl Show fit	ATPase secretory pathway Ca2+ transporting 1
chr8_-_116893057 Show fit	0.05	ENSRNOT00000082113	Bsn Links NCBI RGD Ensembl Show fit	bassoon (presynaptic cytomatrix protein)
chr4_-_144869919 Show fit	0.05	ENSRNOT00000009066	Srgap3 Links NCBI RGD Ensembl Show fit	SLIT-ROBO Rho GTPase activating protein 3
chr7_-_15821927 Show fit	0.05	ENSRNOT00000050658	LOC691422 Links NCBI RGD Ensembl Show fit	similar to zinc finger protein 101
chr1_-_215310013 Show fit	0.04	ENSRNOT00000054858	AABR07006049.2 Links NCBI RGD Ensembl Show fit
chr2_-_231409496 Show fit	0.04	ENSRNOT00000055615 ENSRNOT00000015386 ENSRNOT00000068415	Ank2 Links NCBI RGD Ensembl Show fit	ankyrin 2
chr4_-_56453563 Show fit	0.04	ENSRNOT00000060362	Prrt4 Links NCBI RGD Ensembl Show fit	proline-rich transmembrane protein 4
chr6_+_108820774 Show fit	0.04	ENSRNOT00000089683 ENSRNOT00000080038 ENSRNOT00000006492	Ylpm1 Links NCBI RGD Ensembl Show fit	YLP motif containing 1
chr5_+_77052484 Show fit	0.03	ENSRNOT00000059419 ENSRNOT00000087254	Snx30 Links NCBI RGD Ensembl Show fit	sorting nexin family member 30
chr1_-_88558387 Show fit	0.03	ENSRNOT00000074174	AABR07002896.1 Links NCBI RGD Ensembl Show fit
chr13_-_111948753 Show fit	0.03	ENSRNOT00000048074	Hsd11b1 Links NCBI RGD Ensembl Show fit	hydroxysteroid 11-beta dehydrogenase 1
chr8_-_118378460 Show fit	0.03	ENSRNOT00000047247	RGD1563705 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S23
chr1_-_88558696 Show fit	0.03	ENSRNOT00000038642	AABR07002896.1 Links NCBI RGD Ensembl Show fit
chr10_+_46940965 Show fit	0.03	ENSRNOT00000005366	Llgl1 Links NCBI RGD Ensembl Show fit	LLGL1, scribble cell polarity complex component
chr1_-_167884690 Show fit	0.02	ENSRNOT00000091372	Olr61 Links NCBI RGD Ensembl Show fit	olfactory receptor 61
chr4_-_119591817 Show fit	0.02	ENSRNOT00000048768	AC097129.1 Links NCBI RGD Ensembl Show fit
chr20_-_27208041 Show fit	0.02	ENSRNOT00000084720	Rufy2 Links NCBI RGD Ensembl Show fit	RUN and FYVE domain containing 2
chr8_+_118378059 Show fit	0.02	ENSRNOT00000043247	AABR07071482.1 Links NCBI RGD Ensembl Show fit
chr14_-_29232537 Show fit	0.02	ENSRNOT00000087499	AABR07014739.1 Links NCBI RGD Ensembl Show fit
chr2_-_89498395 Show fit	0.02	ENSRNOT00000068507	AABR07009224.1 Links NCBI RGD Ensembl Show fit
chr1_-_102826965 Show fit	0.01	ENSRNOT00000078692	Saa4 Links NCBI RGD Ensembl Show fit	serum amyloid A4
chr15_-_28044210 Show fit	0.01	ENSRNOT00000033809	Rnase1l1 Links NCBI RGD Ensembl Show fit	ribonuclease, RNase A family, 1-like 1 (pancreatic)
chr1_-_62316450 Show fit	0.01	ENSRNOT00000079171	AABR07001926.3 Links NCBI RGD Ensembl Show fit
chr12_+_37709860 Show fit	0.01	ENSRNOT00000086244	Mphosph9 Links NCBI RGD Ensembl Show fit	M-phase phosphoprotein 9
chr18_-_62614725 Show fit	0.01	ENSRNOT00000025223	Mc4r Links NCBI RGD Ensembl Show fit	melanocortin 4 receptor
chr8_+_36125999 Show fit	0.01	ENSRNOT00000013036 ENSRNOT00000088046	Kirrel3 Links NCBI RGD Ensembl Show fit	kin of IRRE like 3 (Drosophila)
chr1_-_220878059 Show fit	0.01	ENSRNOT00000036745	Snx32 Links NCBI RGD Ensembl Show fit	sorting nexin 32
chr4_-_150829741 Show fit	0.00	ENSRNOT00000051846 ENSRNOT00000052017	Cacna1c Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel subunit alpha1 C
chr4_+_149908375 Show fit	0.00	ENSRNOT00000019504	LOC100909657 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100909657
chr2_+_208900103 Show fit	0.00	ENSRNOT00000055966	Chi3l3 Links NCBI RGD Ensembl Show fit	chitinase 3-like 3
chr15_+_30926938 Show fit	0.00	ENSRNOT00000075625	AABR07017773.1 Links NCBI RGD Ensembl Show fit
chr15_-_29623597 Show fit	0.00	ENSRNOT00000074483	AABR07017647.1 Links NCBI RGD Ensembl Show fit
chr9_-_81868086 Show fit	0.00	ENSRNOT00000067080	Zfp142 Links NCBI RGD Ensembl Show fit	zinc finger protein 142

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0036371	protein localization to M-band(GO:0036309) protein localization to T-tubule(GO:0036371)
0.0	0.0	GO:0032472	Golgi calcium ion transport(GO:0032472)
0.0	0.0	GO:0006713	glucocorticoid catabolic process(GO:0006713)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:1990257	piccolo-bassoon transport vesicle(GO:1990257)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0003845	11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity(GO:0003845)