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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Phox2a
Z-value: 0.41
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Transcription factors associated with Phox2a
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
Phox2a
|
ENSRNOG00000019706 | paired-like homeobox 2a |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Phox2a | rn6_v1_chr1_+_166893734_166893734 | 0.64 | 2.4e-01 | Click! |
Activity profile of Phox2a motif
Sorted Z-values of Phox2a motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr12_-_2174131 | 1.08 |
ENSRNOT00000001313
|
Pcp2
|
Purkinje cell protein 2 |
| chr10_-_88670430 | 0.50 |
ENSRNOT00000025547
|
Hcrt
|
hypocretin neuropeptide precursor |
| chr2_+_145174876 | 0.36 |
ENSRNOT00000040631
|
Mab21l1
|
mab-21 like 1 |
| chr2_-_185852759 | 0.24 |
ENSRNOT00000049461
|
Mab21l2
|
mab-21 like 2 |
| chr1_-_190370499 | 0.14 |
ENSRNOT00000084389
|
AABR07005618.1
|
|
| chr9_+_15166118 | 0.08 |
ENSRNOT00000020432
|
Mdfi
|
MyoD family inhibitor |
| chrX_+_74200972 | 0.08 |
ENSRNOT00000076956
|
Chic1
|
cysteine-rich hydrophobic domain 1 |
| chr3_+_14889510 | 0.07 |
ENSRNOT00000080760
|
Dab2ip
|
DAB2 interacting protein |
| chr10_+_61685645 | 0.06 |
ENSRNOT00000003933
|
Mnt
|
MAX network transcriptional repressor |
| chrX_-_104932508 | 0.06 |
ENSRNOT00000075325
|
Nox1
|
NADPH oxidase 1 |
| chr12_+_49665282 | 0.05 |
ENSRNOT00000086397
|
Grk3
|
G protein-coupled receptor kinase 3 |
| chr2_+_158097843 | 0.05 |
ENSRNOT00000016541
|
Ptx3
|
pentraxin 3 |
| chrX_+_74205842 | 0.04 |
ENSRNOT00000077003
|
Chic1
|
cysteine-rich hydrophobic domain 1 |
| chr12_-_35979193 | 0.04 |
ENSRNOT00000071104
|
Tmem132b
|
transmembrane protein 132B |
| chr2_+_80269661 | 0.03 |
ENSRNOT00000015975
|
AABR07008940.1
|
|
| chr3_+_3389612 | 0.02 |
ENSRNOT00000041984
|
Rpl8
|
ribosomal protein L8 |
| chr2_+_239415046 | 0.02 |
ENSRNOT00000072196
|
Cxxc4
|
CXXC finger protein 4 |
| chr16_-_29936307 | 0.01 |
ENSRNOT00000088707
|
Ddx60
|
DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 |
| chr3_-_46942966 | 0.01 |
ENSRNOT00000087439
|
Rbms1
|
RNA binding motif, single stranded interacting protein 1 |
| chr5_+_36566783 | 0.01 |
ENSRNOT00000077650
|
Fbxl4
|
F-box and leucine-rich repeat protein 4 |
| chr2_+_118910587 | 0.01 |
ENSRNOT00000065518
|
Zfp639
|
zinc finger protein 639 |
| chr9_+_71915421 | 0.01 |
ENSRNOT00000020447
|
Pikfyve
|
phosphoinositide kinase, FYVE-type zinc finger containing |
| chr4_-_58250798 | 0.01 |
ENSRNOT00000048436
|
Klf14
|
Kruppel-like factor 14 |
| chr4_-_18396035 | 0.00 |
ENSRNOT00000034692
|
Sema3a
|
semaphorin 3A |
| chr13_+_90943255 | 0.00 |
ENSRNOT00000011539
|
Vsig8
|
V-set and immunoglobulin domain containing 8 |
| chr1_-_101095594 | 0.00 |
ENSRNOT00000027944
|
Fcgrt
|
Fc fragment of IgG receptor and transporter |
| chr14_-_84334066 | 0.00 |
ENSRNOT00000006160
|
Mtfp1
|
mitochondrial fission process 1 |
| chr1_-_101819478 | 0.00 |
ENSRNOT00000056181
|
Grwd1
|
glutamate-rich WD repeat containing 1 |
| chr8_+_104106740 | 0.00 |
ENSRNOT00000015015
|
Tfdp2
|
transcription factor Dp-2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Phox2a
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
| 0.1 | 0.5 | GO:0051970 | negative regulation of transmission of nerve impulse(GO:0051970) |
| 0.0 | 0.1 | GO:0043324 | eye pigment metabolic process(GO:0042441) pigment metabolic process involved in developmental pigmentation(GO:0043324) pigment metabolic process involved in pigmentation(GO:0043474) rhodopsin metabolic process(GO:0046154) |
| 0.0 | 0.1 | GO:0036324 | vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324) |
| 0.0 | 0.0 | GO:0052422 | modulation of catalytic activity in other organism involved in symbiotic interaction(GO:0052203) modulation by host of symbiont catalytic activity(GO:0052422) regulation of exo-alpha-sialidase activity(GO:1903015) |
| 0.0 | 0.1 | GO:0045726 | positive regulation of integrin biosynthetic process(GO:0045726) oxygen metabolic process(GO:0072592) |
| 0.0 | 0.2 | GO:0010172 | embryonic body morphogenesis(GO:0010172) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:1990032 | parallel fiber(GO:1990032) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
| 0.0 | 0.1 | GO:0015252 | hydrogen ion channel activity(GO:0015252) |
| 0.0 | 0.1 | GO:0035662 | Toll-like receptor 4 binding(GO:0035662) |