GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Pknox2 Links NCBI RGD Ensembl	ENSRNOG00000028856	PBX/knotted 1 homeobox 2
Pknox1 Links NCBI RGD Ensembl	ENSRNOG00000001184	PBX/knotted 1 homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pknox2	rn6_v1_chr8_-_39551700_39551700	0.32	6.0e-01	Click!
Pknox1	rn6_v1_chr20_+_10334308_10334308	0.10	8.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_-_140618405 Show fit	0.12	ENSRNOT00000017736	Setd7 Links NCBI RGD Ensembl Show fit	SET domain containing (lysine methyltransferase) 7
chr12_+_660011 Show fit	0.07	ENSRNOT00000040830	Pds5b Links NCBI RGD Ensembl Show fit	PDS5 cohesin associated factor B
chr10_+_59360765 Show fit	0.07	ENSRNOT00000036278	Zzef1 Links NCBI RGD Ensembl Show fit	zinc finger ZZ-type and EF-hand domain containing 1
chr2_+_198797159 Show fit	0.06	ENSRNOT00000056225	Ankrd35 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 35
chr1_-_201981229 Show fit	0.06	ENSRNOT00000077246 ENSRNOT00000035531	Ikzf5 Links NCBI RGD Ensembl Show fit	IKAROS family zinc finger 5
chr2_+_155555840 Show fit	0.06	ENSRNOT00000080951	AABR07010944.1 Links NCBI RGD Ensembl Show fit
chr18_+_44468784 Show fit	0.05	ENSRNOT00000031812	Dmxl1 Links NCBI RGD Ensembl Show fit	Dmx-like 1
chr10_+_90731865 Show fit	0.05	ENSRNOT00000064429	Adam11 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 11
chr3_-_125213607 Show fit	0.05	ENSRNOT00000078070	Gpcpd1 Links NCBI RGD Ensembl Show fit	glycerophosphocholine phosphodiesterase 1
chr17_-_43614844 Show fit	0.05	ENSRNOT00000023054	Hist1h1a Links NCBI RGD Ensembl Show fit	histone cluster 1 H1 family member a
chr4_-_59809321 Show fit	0.04	ENSRNOT00000017536	Plxna4 Links NCBI RGD Ensembl Show fit	plexin A4
chr20_+_46428124 Show fit	0.04	ENSRNOT00000000327	Foxo3 Links NCBI RGD Ensembl Show fit	forkhead box O3
chr13_+_97838361 Show fit	0.04	ENSRNOT00000003641	Cnst Links NCBI RGD Ensembl Show fit	consortin, connexin sorting protein
chr8_-_33017854 Show fit	0.04	ENSRNOT00000011386	Barx2 Links NCBI RGD Ensembl Show fit	BARX homeobox 2
chr4_+_127164453 Show fit	0.03	ENSRNOT00000017889	Kbtbd8 Links NCBI RGD Ensembl Show fit	kelch repeat and BTB domain containing 8
chr12_-_17186679 Show fit	0.03	ENSRNOT00000001730	Uncx Links NCBI RGD Ensembl Show fit	UNC homeobox
chr7_-_120967490 Show fit	0.03	ENSRNOT00000046399	Sun2 Links NCBI RGD Ensembl Show fit	Sad1 and UNC84 domain containing 2
chr3_+_8958090 Show fit	0.03	ENSRNOT00000086789 ENSRNOT00000064557	Dolpp1 Links NCBI RGD Ensembl Show fit	dolichyldiphosphatase 1
chr5_+_151573092 Show fit	0.03	ENSRNOT00000011049	Slc9a1 Links NCBI RGD Ensembl Show fit	solute carrier family 9 member A1
chr7_-_94563001 Show fit	0.03	ENSRNOT00000051139 ENSRNOT00000005561	Enpp2 Links NCBI RGD Ensembl Show fit	ectonucleotide pyrophosphatase/phosphodiesterase 2
chr17_-_18421861 Show fit	0.03	ENSRNOT00000060500 ENSRNOT00000036560	Fam8a1 Links NCBI RGD Ensembl Show fit	family with sequence similarity 8, member A1
chr7_+_66595742 Show fit	0.03	ENSRNOT00000031191	Usp15 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 15
chr1_-_265573117 Show fit	0.02	ENSRNOT00000044195 ENSRNOT00000055915	LOC100911951 Links NCBI RGD Ensembl Show fit	Kv channel-interacting protein 2-like
chr2_+_3400977 Show fit	0.02	ENSRNOT00000093593	Mctp1 Links NCBI RGD Ensembl Show fit	multiple C2 and transmembrane domain containing 1
chr9_+_94178221 Show fit	0.02	ENSRNOT00000033487	Alppl2 Links NCBI RGD Ensembl Show fit	alkaline phosphatase, placental-like 2
chr2_-_219628997 Show fit	0.02	ENSRNOT00000064484	Trmt13 Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 13 homolog
chr8_+_94122728 Show fit	0.02	ENSRNOT00000014783	Dopey1 Links NCBI RGD Ensembl Show fit	dopey family member 1
chr10_+_4945911 Show fit	0.02	ENSRNOT00000003420	Prm1 Links NCBI RGD Ensembl Show fit	protamine 1
chr9_-_45206427 Show fit	0.02	ENSRNOT00000042227	Aff3 Links NCBI RGD Ensembl Show fit	AF4/FMR2 family, member 3
chr2_-_43999107 Show fit	0.02	ENSRNOT00000065473	LOC100912399 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase kinase kinase 1-like
chr9_+_17163354 Show fit	0.02	ENSRNOT00000026049	Polh Links NCBI RGD Ensembl Show fit	DNA polymerase eta
chr4_+_181315444 Show fit	0.02	ENSRNOT00000044147	Ppfibp1 Links NCBI RGD Ensembl Show fit	PPFIA binding protein 1
chr6_+_52265930 Show fit	0.02	ENSRNOT00000087513 ENSRNOT00000067849	Sypl1 Links NCBI RGD Ensembl Show fit	synaptophysin-like 1
chr5_+_124442293 Show fit	0.02	ENSRNOT00000041922	RGD1564074 Links NCBI RGD Ensembl Show fit	similar to novel protein
chr1_+_197999037 Show fit	0.02	ENSRNOT00000091065	Apobr Links NCBI RGD Ensembl Show fit	apolipoprotein B receptor
chr12_-_17358617 Show fit	0.02	ENSRNOT00000001733	Gpr146 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 146
chr10_+_90731148 Show fit	0.02	ENSRNOT00000093604	Adam11 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 11
chr17_-_10208360 Show fit	0.02	ENSRNOT00000087397	Unc5a Links NCBI RGD Ensembl Show fit	unc-5 netrin receptor A
chr6_+_58468155 Show fit	0.02	ENSRNOT00000091263	Etv1 Links NCBI RGD Ensembl Show fit	ets variant 1
chr10_+_36715565 Show fit	0.02	ENSRNOT00000005048	Clk4 Links NCBI RGD Ensembl Show fit	CDC-like kinase 4
chr4_-_62526724 Show fit	0.01	ENSRNOT00000038950	RGD1565367 Links NCBI RGD Ensembl Show fit	similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2)
chr14_-_81254637 Show fit	0.01	ENSRNOT00000058166	Htt Links NCBI RGD Ensembl Show fit	huntingtin
chr9_-_17163170 Show fit	0.01	ENSRNOT00000025921	Xpo5 Links NCBI RGD Ensembl Show fit	exportin 5
chr12_+_39253409 Show fit	0.01	ENSRNOT00000001774	Camkk2 Links NCBI RGD Ensembl Show fit	calcium/calmodulin-dependent protein kinase kinase 2
chr1_+_65564173 Show fit	0.01	ENSRNOT00000038860	Zbtb45 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 45
chr14_+_83897117 Show fit	0.01	ENSRNOT00000026569	Morc2 Links NCBI RGD Ensembl Show fit	MORC family CW-type zinc finger 2
chr8_-_76239995 Show fit	0.01	ENSRNOT00000071321	LOC100912027 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L27-like
chr3_+_8802852 Show fit	0.01	ENSRNOT00000033934	Lrrc8a Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 8 family, member A
chrX_+_29562165 Show fit	0.01	ENSRNOT00000006074	Ofd1 Links NCBI RGD Ensembl Show fit	OFD1, centriole and centriolar satellite protein
chr14_+_83412968 Show fit	0.01	ENSRNOT00000024993	Eif4enif1 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4E nuclear import factor 1
chr8_-_59077690 Show fit	0.01	ENSRNOT00000066197	Dmxl2 Links NCBI RGD Ensembl Show fit	Dmx-like 2
chr1_+_153589471 Show fit	0.01	ENSRNOT00000023205	Fzd4 Links NCBI RGD Ensembl Show fit	frizzled class receptor 4
chr11_-_31238026 Show fit	0.01	ENSRNOT00000032366	RGD1562726 Links NCBI RGD Ensembl Show fit	similar to Putative protein C21orf62 homolog
chr13_+_113373578 Show fit	0.01	ENSRNOT00000009900	Plxna2 Links NCBI RGD Ensembl Show fit	plexin A2
chr20_+_46667121 Show fit	0.01	ENSRNOT00000089611	Sesn1 Links NCBI RGD Ensembl Show fit	sestrin 1
chr15_+_103344476 Show fit	0.01	ENSRNOT00000013329 ENSRNOT00000077047 ENSRNOT00000078103	Gpr180 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 180
chr13_-_48284408 Show fit	0.01	ENSRNOT00000085967	Srgap2 Links NCBI RGD Ensembl Show fit	SLIT-ROBO Rho GTPase activating protein 2
chr2_+_179952227 Show fit	0.01	ENSRNOT00000015081	Pdgfc Links NCBI RGD Ensembl Show fit	platelet derived growth factor C
chr1_+_214454090 Show fit	0.01	ENSRNOT00000049448	Tspan4 Links NCBI RGD Ensembl Show fit	tetraspanin 4
chr6_+_64808238 Show fit	0.01	ENSRNOT00000093195	Nrcam Links NCBI RGD Ensembl Show fit	neuronal cell adhesion molecule
chr3_+_143003796 Show fit	0.01	ENSRNOT00000006287	Gzf1 Links NCBI RGD Ensembl Show fit	GDNF-inducible zinc finger protein 1
chr3_+_175144495 Show fit	0.01	ENSRNOT00000082601 ENSRNOT00000088026	Cdh4 Links NCBI RGD Ensembl Show fit	cadherin 4
chr6_+_113898420 Show fit	0.01	ENSRNOT00000064872	Nrxn3 Links NCBI RGD Ensembl Show fit	neurexin 3
chr6_-_55001464 Show fit	0.01	ENSRNOT00000006618	Ahr Links NCBI RGD Ensembl Show fit	aryl hydrocarbon receptor
chr4_-_183374195 Show fit	0.01	ENSRNOT00000073927 ENSRNOT00000074740 ENSRNOT00000070907	Caprin2 Links NCBI RGD Ensembl Show fit	caprin family member 2
chr7_+_108613739 Show fit	0.01	ENSRNOT00000007564	Phf20l1 Links NCBI RGD Ensembl Show fit	PHD finger protein 20-like 1
chr14_+_79261092 Show fit	0.01	ENSRNOT00000029191	LOC680039 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC680039
chr2_-_188727670 Show fit	0.01	ENSRNOT00000074920	Lenep Links NCBI RGD Ensembl Show fit	lens epithelial protein
chr13_-_97838228 Show fit	0.01	ENSRNOT00000003618	Tfb2m Links NCBI RGD Ensembl Show fit	transcription factor B2, mitochondrial
chr3_+_122544788 Show fit	0.01	ENSRNOT00000063828	Tgm3 Links NCBI RGD Ensembl Show fit	transglutaminase 3
chr2_+_140471690 Show fit	0.01	ENSRNOT00000017379	Naa15 Links NCBI RGD Ensembl Show fit	N(alpha)-acetyltransferase 15, NatA auxiliary subunit
chr9_-_74048244 Show fit	0.01	ENSRNOT00000018293	Lancl1 Links NCBI RGD Ensembl Show fit	LanC like 1
chr20_-_5212624 Show fit	0.01	ENSRNOT00000074261	LOC103689996 Links NCBI RGD Ensembl Show fit	antigen peptide transporter 2
chr2_+_218951451 Show fit	0.00	ENSRNOT00000019190	Extl2 Links NCBI RGD Ensembl Show fit	exostosin-like glycosyltransferase 2
chr10_-_59360661 Show fit	0.00	ENSRNOT00000036942	Cyb5d2 Links NCBI RGD Ensembl Show fit	cytochrome b5 domain containing 2
chr6_-_137733026 Show fit	0.00	ENSRNOT00000019213	Jag2 Links NCBI RGD Ensembl Show fit	jagged 2
chr3_-_8979889 Show fit	0.00	ENSRNOT00000065128	Crat Links NCBI RGD Ensembl Show fit	carnitine O-acetyltransferase
chr1_-_198320075 Show fit	0.00	ENSRNOT00000081291	Taok2 Links NCBI RGD Ensembl Show fit	TAO kinase 2
chr13_-_95250235 Show fit	0.00	ENSRNOT00000085648	Akt3 Links NCBI RGD Ensembl Show fit	AKT serine/threonine kinase 3
chr1_-_57555048 Show fit	0.00	ENSRNOT00000066370	Prdm9 Links NCBI RGD Ensembl Show fit	PR/SET domain 9
chr15_-_88670349 Show fit	0.00	ENSRNOT00000012881	Rnf219 Links NCBI RGD Ensembl Show fit	ring finger protein 219
chr10_+_88245532 Show fit	0.00	ENSRNOT00000019863	Gast Links NCBI RGD Ensembl Show fit	gastrin
chr15_+_51222954 Show fit	0.00	ENSRNOT00000064428 ENSRNOT00000088928	Entpd4 Links NCBI RGD Ensembl Show fit	ectonucleoside triphosphate diphosphohydrolase 4
chr1_+_93242050 Show fit	0.00	ENSRNOT00000013741	RGD1562402 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L27a
chr10_-_46969406 Show fit	0.00	ENSRNOT00000006753	Flii Links NCBI RGD Ensembl Show fit	FLII, actin remodeling protein
chr7_-_11266630 Show fit	0.00	ENSRNOT00000027926	Cactin Links NCBI RGD Ensembl Show fit	cactin, spliceosome C complex subunit
chr11_+_84745904 Show fit	0.00	ENSRNOT00000002617	Klhl6 Links NCBI RGD Ensembl Show fit	kelch-like family member 6
chr18_+_51523758 Show fit	0.00	ENSRNOT00000078518	Gramd3 Links NCBI RGD Ensembl Show fit	GRAM domain containing 3
chr14_-_84820415 Show fit	0.00	ENSRNOT00000057501	Mtmr3 Links NCBI RGD Ensembl Show fit	myotubularin related protein 3
chr20_+_3995544 Show fit	0.00	ENSRNOT00000000527	Tap2 Links NCBI RGD Ensembl Show fit	transporter 2, ATP binding cassette subfamily B member
chr6_+_132090218 Show fit	0.00	ENSRNOT00000083208	Ccnk Links NCBI RGD Ensembl Show fit	cyclin K
chr12_+_41316764 Show fit	0.00	ENSRNOT00000090867	Oas3 Links NCBI RGD Ensembl Show fit	2'-5'-oligoadenylate synthetase 3
chr14_-_105055421 Show fit	0.00	ENSRNOT00000008274	Lgalsl Links NCBI RGD Ensembl Show fit	galectin-like
chr6_+_132090633 Show fit	0.00	ENSRNOT00000057171	Ccnk Links NCBI RGD Ensembl Show fit	cyclin K
chr7_-_60743328 Show fit	0.00	ENSRNOT00000066767	Mdm2 Links NCBI RGD Ensembl Show fit	MDM2 proto-oncogene
chr7_+_12146642 Show fit	0.00	ENSRNOT00000085899	Tcf3 Links NCBI RGD Ensembl Show fit	transcription factor 3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0018026	peptidyl-lysine monomethylation(GO:0018026)
0.0	0.0	GO:0030473	nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration(GO:0021817) nuclear migration along microtubule(GO:0030473) nuclear matrix anchoring at nuclear membrane(GO:0090292)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:2001070	starch binding(GO:2001070)