GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Plagl1 Links NCBI RGD Ensembl	ENSRNOG00000025587	PLAG1 like zinc finger 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Plagl1	rn6_v1_chr1_+_7252349_7252349	0.18	7.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_-_11018160 Show fit	0.10	ENSRNOT00000092061	Aes Links NCBI RGD Ensembl Show fit	amino-terminal enhancer of split
chr8_-_132027006 Show fit	0.09	ENSRNOT00000050963	LOC367195 Links NCBI RGD Ensembl Show fit	similar to 60S RIBOSOMAL PROTEIN L7
chr18_+_32594958 Show fit	0.09	ENSRNOT00000018511	Spry4 Links NCBI RGD Ensembl Show fit	sprouty RTK signaling antagonist 4
chr17_-_13393243 Show fit	0.07	ENSRNOT00000018252	Gadd45g Links NCBI RGD Ensembl Show fit	growth arrest and DNA-damage-inducible, gamma
chr13_-_50509916 Show fit	0.07	ENSRNOT00000076747	Ren Links NCBI RGD Ensembl Show fit	renin
chr1_-_88826302 Show fit	0.07	ENSRNOT00000028275	Lrfn3 Links NCBI RGD Ensembl Show fit	leucine rich repeat and fibronectin type III domain containing 3
chr1_-_101236065 Show fit	0.06	ENSRNOT00000066834	Cd37 Links NCBI RGD Ensembl Show fit	CD37 molecule
chr16_+_41079444 Show fit	0.06	ENSRNOT00000015623	Neil3 Links NCBI RGD Ensembl Show fit	nei-like DNA glycosylase 3
chr5_-_36683356 Show fit	0.05	ENSRNOT00000009043	Pou3f2 Links NCBI RGD Ensembl Show fit	POU class 3 homeobox 2
chr18_+_29191731 Show fit	0.05	ENSRNOT00000068085 ENSRNOT00000025495	Cystm1 Links NCBI RGD Ensembl Show fit	cysteine-rich transmembrane module containing 1
chr5_-_72287669 Show fit	0.05	ENSRNOT00000022255	Klf4 Links NCBI RGD Ensembl Show fit	Kruppel like factor 4
chr12_-_21760292 Show fit	0.05	ENSRNOT00000059592	LOC102550456 Links NCBI RGD Ensembl Show fit	TSC22 domain family protein 4-like
chr13_+_52887649 Show fit	0.05	ENSRNOT00000048033	Ascl5 Links NCBI RGD Ensembl Show fit	achaete-scute family bHLH transcription factor 5
chr1_-_101085884 Show fit	0.05	ENSRNOT00000085352	Rcn3 Links NCBI RGD Ensembl Show fit	reticulocalbin 3
chr7_-_144936803 Show fit	0.04	ENSRNOT00000055279	Gpr84 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 84
chr19_+_56220755 Show fit	0.04	ENSRNOT00000023452	Tubb3 Links NCBI RGD Ensembl Show fit	tubulin, beta 3 class III
chr3_+_160852164 Show fit	0.04	ENSRNOT00000019127	Rbpjl Links NCBI RGD Ensembl Show fit	recombination signal binding protein for immunoglobulin kappa J region-like
chr7_-_12918173 Show fit	0.04	ENSRNOT00000011010	Tpgs1 Links NCBI RGD Ensembl Show fit	tubulin polyglutamylase complex subunit 1
chr2_-_188660179 Show fit	0.04	ENSRNOT00000027935	Efna4 Links NCBI RGD Ensembl Show fit	ephrin A4
chr14_+_80248140 Show fit	0.04	ENSRNOT00000010852	Htra3 Links NCBI RGD Ensembl Show fit	HtrA serine peptidase 3
chr20_+_44060731 Show fit	0.04	ENSRNOT00000000737	Lama4 Links NCBI RGD Ensembl Show fit	laminin subunit alpha 4
chr12_-_9990284 Show fit	0.04	ENSRNOT00000001264	Rasl11a Links NCBI RGD Ensembl Show fit	RAS-like family 11 member A
chr20_-_7219548 Show fit	0.04	ENSRNOT00000033907	Rps10 Links NCBI RGD Ensembl Show fit	ribosomal protein S10
chr2_-_219558675 Show fit	0.04	ENSRNOT00000020149	Rtcd1 Links NCBI RGD Ensembl Show fit	RNA terminal phosphate cyclase domain 1
chr1_-_220806433 Show fit	0.04	ENSRNOT00000038138	Drap1 Links NCBI RGD Ensembl Show fit	Dr1 associated protein 1
chr18_-_12640716 Show fit	0.04	ENSRNOT00000020697	Klhl14 Links NCBI RGD Ensembl Show fit	kelch-like family member 14
chr10_-_66020682 Show fit	0.04	ENSRNOT00000011019	Fam58b Links NCBI RGD Ensembl Show fit	family with sequence similarity 58, member B
chr10_-_14092289 Show fit	0.04	ENSRNOT00000019624	Ndufb10 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit B10
chr13_+_88644520 Show fit	0.03	ENSRNOT00000003979	Spata46 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 46
chr10_-_55783489 Show fit	0.03	ENSRNOT00000010415	Alox15b Links NCBI RGD Ensembl Show fit	arachidonate 15-lipoxygenase, type B
chr2_+_228544418 Show fit	0.03	ENSRNOT00000013030	Tram1l1 Links NCBI RGD Ensembl Show fit	translocation associated membrane protein 1-like 1
chr7_-_107385528 Show fit	0.03	ENSRNOT00000093352	Tmem71 Links NCBI RGD Ensembl Show fit	transmembrane protein 71
chr12_-_6703979 Show fit	0.03	ENSRNOT00000061246	Tex26 Links NCBI RGD Ensembl Show fit	testis expressed 26
chrX_+_68774699 Show fit	0.03	ENSRNOT00000081662	Stard8 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 8
chr10_-_45534570 Show fit	0.03	ENSRNOT00000058362	Gjc2 Links NCBI RGD Ensembl Show fit	gap junction protein, gamma 2
chr10_-_88266210 Show fit	0.03	ENSRNOT00000090702 ENSRNOT00000020603	Hap1 Links NCBI RGD Ensembl Show fit	huntingtin-associated protein 1
chr9_+_92618352 Show fit	0.03	ENSRNOT00000034603	Sp140 Links NCBI RGD Ensembl Show fit	SP140 nuclear body protein
chr20_+_6356423 Show fit	0.03	ENSRNOT00000000628	Cdkn1a Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 1A
chr1_+_175445088 Show fit	0.03	ENSRNOT00000036718	Adm Links NCBI RGD Ensembl Show fit	adrenomedullin
chr13_+_90184569 Show fit	0.03	ENSRNOT00000082393	Slamf1 Links NCBI RGD Ensembl Show fit	signaling lymphocytic activation molecule family member 1
chr9_+_94228960 Show fit	0.03	ENSRNOT00000083137 ENSRNOT00000080897	Akp3 Links NCBI RGD Ensembl Show fit	alkaline phosphatase 3, intestine, not Mn requiring
chr16_+_6970342 Show fit	0.03	ENSRNOT00000061294 ENSRNOT00000048344	Itih4 Links NCBI RGD Ensembl Show fit	inter-alpha-trypsin inhibitor heavy chain family, member 4
chr3_+_100788806 Show fit	0.02	ENSRNOT00000083289 ENSRNOT00000090445	Bdnf Links NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr9_-_9702306 Show fit	0.02	ENSRNOT00000082341	Trip10 Links NCBI RGD Ensembl Show fit	thyroid hormone receptor interactor 10
chr12_-_36555694 Show fit	0.02	ENSRNOT00000001292	Aacs Links NCBI RGD Ensembl Show fit	acetoacetyl-CoA synthetase
chr15_+_104095179 Show fit	0.02	ENSRNOT00000093487	Cldn10 Links NCBI RGD Ensembl Show fit	claudin 10
chr1_-_222189604 Show fit	0.02	ENSRNOT00000028704	Kcnk4 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 4
chr1_+_101859346 Show fit	0.02	ENSRNOT00000028627	Kdelr1 Links NCBI RGD Ensembl Show fit	KDEL endoplasmic reticulum protein retention receptor 1
chr13_+_80517536 Show fit	0.02	ENSRNOT00000004386	Myoc Links NCBI RGD Ensembl Show fit	myocilin
chr5_+_133221139 Show fit	0.02	ENSRNOT00000047522	Trabd2b Links NCBI RGD Ensembl Show fit	TraB domain containing 2B
chr1_+_7252349 Show fit	0.02	ENSRNOT00000030329	Plagl1 Links NCBI RGD Ensembl Show fit	PLAG1 like zinc finger 1
chr9_+_113699170 Show fit	0.02	ENSRNOT00000017915	Twsg1 Links NCBI RGD Ensembl Show fit	twisted gastrulation BMP signaling modulator 1
chr5_+_14415606 Show fit	0.02	ENSRNOT00000089273	Rgs20 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 20
chr4_+_157230769 Show fit	0.02	ENSRNOT00000091464 ENSRNOT00000017472	Phb2 Links NCBI RGD Ensembl Show fit	prohibitin 2
chr5_-_170679315 Show fit	0.02	ENSRNOT00000071459	Ajap1 Links NCBI RGD Ensembl Show fit	adherens junctions associated protein 1
chr4_+_42202838 Show fit	0.02	ENSRNOT00000082453	Mdfic Links NCBI RGD Ensembl Show fit	MyoD family inhibitor domain containing
chr9_-_15306465 Show fit	0.02	ENSRNOT00000019404	Frs3 Links NCBI RGD Ensembl Show fit	fibroblast growth factor receptor substrate 3
chrX_-_11164915 Show fit	0.02	ENSRNOT00000005138	Atp6ap2 Links NCBI RGD Ensembl Show fit	ATPase H+ transporting accessory protein 2
chr10_+_59533480 Show fit	0.02	ENSRNOT00000087723	Atp2a3 Links NCBI RGD Ensembl Show fit	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
chr2_+_30664441 Show fit	0.02	ENSRNOT00000061166	Ak6 Links NCBI RGD Ensembl Show fit	adenylate kinase 6
chr1_-_227175096 Show fit	0.02	ENSRNOT00000054811	AABR07006259.1 Links NCBI RGD Ensembl Show fit
chr16_+_51748970 Show fit	0.02	ENSRNOT00000059182	Adam26a Links NCBI RGD Ensembl Show fit	a disintegrin and metallopeptidase domain 26A
chr14_-_86796378 Show fit	0.02	ENSRNOT00000092021	Myo1g Links NCBI RGD Ensembl Show fit	myosin IG
chr4_-_85192834 Show fit	0.01	ENSRNOT00000043752	Ggct Links NCBI RGD Ensembl Show fit	gamma-glutamyl cyclotransferase
chr10_-_103816287 Show fit	0.01	ENSRNOT00000004477	Grin2c Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor NMDA type subunit 2C
chr4_+_98027554 Show fit	0.01	ENSRNOT00000009503	Serbp1 Links NCBI RGD Ensembl Show fit	Serpine1 mRNA binding protein 1
chr10_+_59529785 Show fit	0.01	ENSRNOT00000064840 ENSRNOT00000065181	Atp2a3 Links NCBI RGD Ensembl Show fit	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
chr17_-_70045865 Show fit	0.01	ENSRNOT00000031504	Calml5 Links NCBI RGD Ensembl Show fit	calmodulin-like 5
chr20_+_11114164 Show fit	0.01	ENSRNOT00000001602	Agpat3 Links NCBI RGD Ensembl Show fit	1-acylglycerol-3-phosphate O-acyltransferase 3
chr4_-_157230647 Show fit	0.01	ENSRNOT00000017334	Emg1 Links NCBI RGD Ensembl Show fit	EMG1 N1-specific pseudouridine methyltransferase
chr3_-_10694649 Show fit	0.01	ENSRNOT00000037742	Gpr107 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 107
chr1_-_185143272 Show fit	0.01	ENSRNOT00000027752	Nucb2 Links NCBI RGD Ensembl Show fit	nucleobindin 2
chr10_+_56187020 Show fit	0.01	ENSRNOT00000046490	Tp53 Links NCBI RGD Ensembl Show fit	tumor protein p53
chr3_-_161212188 Show fit	0.01	ENSRNOT00000065751	Wfdc3 Links NCBI RGD Ensembl Show fit	WAP four-disulfide core domain 3
chr15_+_47455690 Show fit	0.01	ENSRNOT00000075276	LOC100910401 Links NCBI RGD Ensembl Show fit	serine protease 55-like
chr20_+_14578605 Show fit	0.01	ENSRNOT00000041165	Rtdr1 Links NCBI RGD Ensembl Show fit	rhabdoid tumor deletion region gene 1
chr1_+_206900617 Show fit	0.01	ENSRNOT00000054897	Dock1 Links NCBI RGD Ensembl Show fit	dedicator of cyto-kinesis 1
chr10_-_5253336 Show fit	0.01	ENSRNOT00000085310	Ciita Links NCBI RGD Ensembl Show fit	class II, major histocompatibility complex, transactivator
chr3_-_83306781 Show fit	0.01	ENSRNOT00000014088	Ttc17 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 17
chr13_+_48745860 Show fit	0.01	ENSRNOT00000010242	Slc45a3 Links NCBI RGD Ensembl Show fit	solute carrier family 45, member 3
chr3_+_15560712 Show fit	0.01	ENSRNOT00000010218	Ptgs1 Links NCBI RGD Ensembl Show fit	prostaglandin-endoperoxide synthase 1
chr4_+_21862313 Show fit	0.01	ENSRNOT00000007948	Dmtf1 Links NCBI RGD Ensembl Show fit	cyclin D binding myb-like transcription factor 1
chr13_-_85443976 Show fit	0.01	ENSRNOT00000005213	Uck2 Links NCBI RGD Ensembl Show fit	uridine-cytidine kinase 2
chr13_+_47572219 Show fit	0.01	ENSRNOT00000088449 ENSRNOT00000087664 ENSRNOT00000005853	Pigr Links NCBI RGD Ensembl Show fit	polymeric immunoglobulin receptor
chr20_+_4156858 Show fit	0.01	ENSRNOT00000039553	Btnl3 Links NCBI RGD Ensembl Show fit	butyrophilin-like 3
chr7_+_117409576 Show fit	0.01	ENSRNOT00000017067	Cyc1 Links NCBI RGD Ensembl Show fit	cytochrome c-1
chr12_+_22026075 Show fit	0.01	ENSRNOT00000029041	LOC100910838 Links NCBI RGD Ensembl Show fit	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1-like
chr20_-_18060661 Show fit	0.01	ENSRNOT00000070925	AABR07044711.1 Links NCBI RGD Ensembl Show fit
chr1_+_226687258 Show fit	0.01	ENSRNOT00000079679	Vwce Links NCBI RGD Ensembl Show fit	von Willebrand factor C and EGF domains
chr1_-_205630073 Show fit	0.01	ENSRNOT00000037064	Tex36 Links NCBI RGD Ensembl Show fit	testis expressed 36
chr7_-_18612118 Show fit	0.01	ENSRNOT00000078122 ENSRNOT00000010197	Rab11b Links NCBI RGD Ensembl Show fit	RAB11B, member RAS oncogene family
chr14_-_37763712 Show fit	0.01	ENSRNOT00000030610	Zar1 Links NCBI RGD Ensembl Show fit	zygote arrest 1
chr1_-_221269017 Show fit	0.01	ENSRNOT00000028363 ENSRNOT00000084396	Dpf2 Links NCBI RGD Ensembl Show fit	double PHD fingers 2
chr6_-_23404368 Show fit	0.01	ENSRNOT00000036374	Fam179a Links NCBI RGD Ensembl Show fit	family with sequence similarity 179, member A
chr7_-_115946425 Show fit	0.00	ENSRNOT00000000199	Jrk Links NCBI RGD Ensembl Show fit	jerky homolog (mouse)
chr8_-_96088364 Show fit	0.00	ENSRNOT00000086161 ENSRNOT00000056818	Snx14 Links NCBI RGD Ensembl Show fit	sorting nexin 14
chr13_-_36101411 Show fit	0.00	ENSRNOT00000074471	Tmem37 Links NCBI RGD Ensembl Show fit	transmembrane protein 37
chr12_+_23463157 Show fit	0.00	ENSRNOT00000044841	Cux1 Links NCBI RGD Ensembl Show fit	cut-like homeobox 1
chr1_+_212578450 Show fit	0.00	ENSRNOT00000064501	Paox Links NCBI RGD Ensembl Show fit	polyamine oxidase
chr1_+_170212817 Show fit	0.00	ENSRNOT00000040672	RGD1561034 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein MGC34805
chr10_+_104377748 Show fit	0.00	ENSRNOT00000080714	Llgl2 Links NCBI RGD Ensembl Show fit	LLGL2, scribble cell polarity complex component
chr15_-_56970365 Show fit	0.00	ENSRNOT00000047192	Lrch1 Links NCBI RGD Ensembl Show fit	leucine rich repeats and calponin homology domain containing 1
chr1_+_31700953 Show fit	0.00	ENSRNOT00000020251	Exoc3 Links NCBI RGD Ensembl Show fit	exocyst complex component 3
chr12_+_23151180 Show fit	0.00	ENSRNOT00000059486	Cux1 Links NCBI RGD Ensembl Show fit	cut-like homeobox 1
chr7_+_11095468 Show fit	0.00	ENSRNOT00000061219	Celf5 Links NCBI RGD Ensembl Show fit	CUGBP, Elav-like family member 5
chr6_-_33088582 Show fit	0.00	ENSRNOT00000083144	Tdrd15 Links NCBI RGD Ensembl Show fit	tudor domain containing 15

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0030886	negative regulation of myeloid dendritic cell activation(GO:0030886)
0.0	0.1	GO:2000342	negative regulation of chemokine (C-X-C motif) ligand 2 production(GO:2000342)
0.0	0.1	GO:0002003	angiotensin maturation(GO:0002003)
0.0	0.1	GO:0021979	hypothalamus cell differentiation(GO:0021979)
0.0	0.1	GO:2000210	positive regulation of anoikis(GO:2000210)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001010	transcription factor activity, sequence-specific DNA binding transcription factor recruiting(GO:0001010)