GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Prox1 Links NCBI RGD Ensembl	ENSRNOG00000003694	prospero homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Prox1	rn6_v1_chr13_+_108382399_108382399	0.64	2.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr15_+_36865548 Show fit	0.10	ENSRNOT00000076460	Parp4 Links NCBI RGD Ensembl Show fit	poly (ADP-ribose) polymerase family, member 4
chr2_-_140618405 Show fit	0.06	ENSRNOT00000017736	Setd7 Links NCBI RGD Ensembl Show fit	SET domain containing (lysine methyltransferase) 7
chr1_+_212181374 Show fit	0.06	ENSRNOT00000085921	Adgra1 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor A1
chr12_+_13810180 Show fit	0.06	ENSRNOT00000084865 ENSRNOT00000038203	Tnrc18 Links NCBI RGD Ensembl Show fit	trinucleotide repeat containing 18
chr13_+_51384562 Show fit	0.05	ENSRNOT00000077928	Kdm5b Links NCBI RGD Ensembl Show fit	lysine demethylase 5B
chr11_+_66316606 Show fit	0.05	ENSRNOT00000041715	Stxbp5l Links NCBI RGD Ensembl Show fit	syntaxin binding protein 5-like
chr15_+_47470863 Show fit	0.05	ENSRNOT00000072438	LOC683422 Links NCBI RGD Ensembl Show fit	similar to Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor)
chr10_-_73787083 Show fit	0.05	ENSRNOT00000035280	Med13 Links NCBI RGD Ensembl Show fit	mediator complex subunit 13
chr4_-_117126822 Show fit	0.05	ENSRNOT00000086720	Rab11fip5 Links NCBI RGD Ensembl Show fit	RAB11 family interacting protein 5
chr7_-_114848414 Show fit	0.04	ENSRNOT00000032620	Slc45a4 Links NCBI RGD Ensembl Show fit	solute carrier family 45, member 4
chr5_+_147069616 Show fit	0.04	ENSRNOT00000072908	Trim62 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 62
chr6_-_132608600 Show fit	0.04	ENSRNOT00000015855	Degs2 Links NCBI RGD Ensembl Show fit	delta(4)-desaturase, sphingolipid 2
chr6_+_6619076 Show fit	0.04	ENSRNOT00000042307 ENSRNOT00000080013	Eml4 Links NCBI RGD Ensembl Show fit	echinoderm microtubule associated protein like 4
chr17_-_76250537 Show fit	0.04	ENSRNOT00000092693	Upf2 Links NCBI RGD Ensembl Show fit	UPF2 regulator of nonsense transcripts homolog (yeast)
chr15_-_110046687 Show fit	0.03	ENSRNOT00000057404 ENSRNOT00000006624 ENSRNOT00000089695	Nalcn Links NCBI RGD Ensembl Show fit	sodium leak channel, non-selective
chr8_-_5429581 Show fit	0.03	ENSRNOT00000044174	Dync2h1 Links NCBI RGD Ensembl Show fit	dynein cytoplasmic 2 heavy chain 1
chr18_+_30880020 Show fit	0.03	ENSRNOT00000060468	Pcdhgb5 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily B, 5
chr3_+_113131327 Show fit	0.03	ENSRNOT00000018460	Tubgcp4 Links NCBI RGD Ensembl Show fit	tubulin, gamma complex associated protein 4
chr3_+_11593655 Show fit	0.03	ENSRNOT00000074122	Pip5kl1 Links NCBI RGD Ensembl Show fit	phosphatidylinositol-4-phosphate 5-kinase-like 1
chr5_+_156613741 Show fit	0.03	ENSRNOT00000076031	Sh2d5 Links NCBI RGD Ensembl Show fit	SH2 domain containing 5
chr5_+_151362019 Show fit	0.03	ENSRNOT00000077083 ENSRNOT00000067801	Wasf2 Links NCBI RGD Ensembl Show fit	WAS protein family, member 2
chr5_+_47853818 Show fit	0.03	ENSRNOT00000009228 ENSRNOT00000079656	Casp8ap2 Links NCBI RGD Ensembl Show fit	caspase 8 associated protein 2
chr3_-_162059524 Show fit	0.03	ENSRNOT00000033873	Zfp334 Links NCBI RGD Ensembl Show fit	zinc finger protein 334
chr11_-_87769761 Show fit	0.03	ENSRNOT00000052250	AABR07072266.1 Links NCBI RGD Ensembl Show fit
chr19_-_46101250 Show fit	0.03	ENSRNOT00000015874	Adamts18 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 18
chr4_+_25538497 Show fit	0.02	ENSRNOT00000009264	Cfap69 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 69
chr20_-_10257044 Show fit	0.02	ENSRNOT00000068289	Wdr4 Links NCBI RGD Ensembl Show fit	WD repeat domain 4
chr16_+_32449116 Show fit	0.02	ENSRNOT00000050549	Clcn3 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 3
chr14_+_91782354 Show fit	0.02	ENSRNOT00000005902	Ikzf1 Links NCBI RGD Ensembl Show fit	IKAROS family zinc finger 1
chr3_-_133122691 Show fit	0.02	ENSRNOT00000083637	Tasp1 Links NCBI RGD Ensembl Show fit	taspase 1
chr5_+_122019301 Show fit	0.02	ENSRNOT00000068158	Pde4b Links NCBI RGD Ensembl Show fit	phosphodiesterase 4B
chr2_-_192697800 Show fit	0.02	ENSRNOT00000066614	NEWGENE_2324572 Links NCBI RGD Ensembl Show fit	small proline rich protein 4
chr4_-_133951264 Show fit	0.02	ENSRNOT00000090506	Pdzrn3 Links NCBI RGD Ensembl Show fit	PDZ domain containing RING finger 3
chr7_+_97760134 Show fit	0.02	ENSRNOT00000086792	Tbc1d31 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 31
chr1_+_61374379 Show fit	0.02	ENSRNOT00000015343	Zfp53 Links NCBI RGD Ensembl Show fit	zinc finger protein 53
chr6_-_42002819 Show fit	0.02	ENSRNOT00000032417	Greb1 Links NCBI RGD Ensembl Show fit	growth regulation by estrogen in breast cancer 1
chr6_-_106971250 Show fit	0.02	ENSRNOT00000010926	Dpf3 Links NCBI RGD Ensembl Show fit	double PHD fingers 3
chr4_+_21872856 Show fit	0.02	ENSRNOT00000044810	Dmtf1 Links NCBI RGD Ensembl Show fit	cyclin D binding myb-like transcription factor 1
chrX_+_156812064 Show fit	0.02	ENSRNOT00000077142	Hcfc1 Links NCBI RGD Ensembl Show fit	host cell factor C1
chr3_-_110324084 Show fit	0.02	ENSRNOT00000010381	Bmf Links NCBI RGD Ensembl Show fit	Bcl2 modifying factor
chr18_+_17091310 Show fit	0.02	ENSRNOT00000093285	Fhod3 Links NCBI RGD Ensembl Show fit	formin homology 2 domain containing 3
chr1_+_217459215 Show fit	0.01	ENSRNOT00000092386 ENSRNOT00000092357	Shank2 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 2
chr18_+_79773608 Show fit	0.01	ENSRNOT00000088484	Zfp516 Links NCBI RGD Ensembl Show fit	zinc finger protein 516
chr1_+_80920747 Show fit	0.01	ENSRNOT00000026077	Zfp180 Links NCBI RGD Ensembl Show fit	zinc finger protein 180
chr19_-_49198073 Show fit	0.01	ENSRNOT00000068440	Cdyl2 Links NCBI RGD Ensembl Show fit	chromodomain Y-like 2
chr8_-_118182559 Show fit	0.01	ENSRNOT00000084838	Dhx30 Links NCBI RGD Ensembl Show fit	DExH-box helicase 30
chr16_+_19068783 Show fit	0.01	ENSRNOT00000017424	Cherp Links NCBI RGD Ensembl Show fit	calcium homeostasis endoplasmic reticulum protein
chr1_+_243276403 Show fit	0.01	ENSRNOT00000021496	Kank1 Links NCBI RGD Ensembl Show fit	KN motif and ankyrin repeat domains 1
chr10_+_3655038 Show fit	0.01	ENSRNOT00000045047	Cpped1 Links NCBI RGD Ensembl Show fit	calcineurin-like phosphoesterase domain containing 1
chr6_-_10592454 Show fit	0.01	ENSRNOT00000020600	Pigf Links NCBI RGD Ensembl Show fit	phosphatidylinositol glycan anchor biosynthesis, class F
chr1_+_199352344 Show fit	0.01	ENSRNOT00000026466	Bckdk Links NCBI RGD Ensembl Show fit	branched chain ketoacid dehydrogenase kinase
chr15_-_28672530 Show fit	0.01	ENSRNOT00000022593 ENSRNOT00000087722	Chd8 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 8
chr10_-_57606171 Show fit	0.01	ENSRNOT00000009015	Nup88 Links NCBI RGD Ensembl Show fit	nucleoporin 88
chr2_+_252018597 Show fit	0.01	ENSRNOT00000020452	Mcoln2 Links NCBI RGD Ensembl Show fit	mucolipin 2
chr3_-_71295575 Show fit	0.01	ENSRNOT00000040303 ENSRNOT00000083015	Zswim2 Links NCBI RGD Ensembl Show fit	zinc finger, SWIM-type containing 2
chr2_+_86996497 Show fit	0.01	ENSRNOT00000042058	Zfp455 Links NCBI RGD Ensembl Show fit	zinc finger protein 455
chr4_+_61924013 Show fit	0.01	ENSRNOT00000090717	Bpgm Links NCBI RGD Ensembl Show fit	bisphosphoglycerate mutase
chr2_-_77784522 Show fit	0.01	ENSRNOT00000030328	LOC310177 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 0610040D20
chr7_-_126913585 Show fit	0.01	ENSRNOT00000036025	Celsr1 Links NCBI RGD Ensembl Show fit	cadherin, EGF LAG seven-pass G-type receptor 1
chr4_+_89079014 Show fit	0.01	ENSRNOT00000087451	Herc3 Links NCBI RGD Ensembl Show fit	HECT and RLD domain containing E3 ubiquitin protein ligase 3
chr13_+_51384389 Show fit	0.00	ENSRNOT00000087025	Kdm5b Links NCBI RGD Ensembl Show fit	lysine demethylase 5B
chr1_+_265904566 Show fit	0.00	ENSRNOT00000086041 ENSRNOT00000036156	Gbf1 Links NCBI RGD Ensembl Show fit	golgi brefeldin A resistant guanine nucleotide exchange factor 1
chr12_-_19328637 Show fit	0.00	ENSRNOT00000001829	Taf6 Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 6
chr1_+_56982821 Show fit	0.00	ENSRNOT00000059845	Ermard Links NCBI RGD Ensembl Show fit	ER membrane-associated RNA degradation
chr17_-_21705773 Show fit	0.00	ENSRNOT00000078010	Gcnt2 Links NCBI RGD Ensembl Show fit	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
chr10_+_72147816 Show fit	0.00	ENSRNOT00000090085	LOC102553386 Links NCBI RGD Ensembl Show fit	SUMO-conjugating enzyme UBC9-like
chr10_+_81913689 Show fit	0.00	ENSRNOT00000003780	Tob1 Links NCBI RGD Ensembl Show fit	transducer of ErbB-2.1
chr8_+_116776494 Show fit	0.00	ENSRNOT00000050702	Cdhr4 Links NCBI RGD Ensembl Show fit	cadherin-related family member 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0015766	disaccharide transport(GO:0015766) sucrose transport(GO:0015770) oligosaccharide transport(GO:0015772)
0.0	0.1	GO:0035937	estrogen secretion(GO:0035937) estradiol secretion(GO:0035938) regulation of estrogen secretion(GO:2000861) regulation of estradiol secretion(GO:2000864)
0.0	0.0	GO:0006667	sphinganine metabolic process(GO:0006667)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0015154	sucrose:proton symporter activity(GO:0008506) sucrose transmembrane transporter activity(GO:0008515) disaccharide transmembrane transporter activity(GO:0015154) oligosaccharide transmembrane transporter activity(GO:0015157)
0.0	0.0	GO:0042284	sphingolipid delta-4 desaturase activity(GO:0042284)