GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Rara Links NCBI RGD Ensembl	ENSRNOG00000009972	retinoic acid receptor, alpha

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Rara	rn6_v1_chr10_+_86870523_86870523	0.79	1.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_+_168752133 Show fit	0.12	ENSRNOT00000010289	Apold1 Links NCBI RGD Ensembl Show fit	apolipoprotein L domain containing 1
chr10_-_82229140 Show fit	0.09	ENSRNOT00000004400	Epn3 Links NCBI RGD Ensembl Show fit	epsin 3
chr16_-_20890949 Show fit	0.09	ENSRNOT00000081977	Homer3 Links NCBI RGD Ensembl Show fit	homer scaffolding protein 3
chr1_+_199449973 Show fit	0.09	ENSRNOT00000029994	Trim72 Links NCBI RGD Ensembl Show fit	tripartite motif containing 72
chr5_-_152473868 Show fit	0.06	ENSRNOT00000022130	Fam110d Links NCBI RGD Ensembl Show fit	family with sequence similarity 110, member D
chr1_+_88182585 Show fit	0.05	ENSRNOT00000044145	Yif1b Links NCBI RGD Ensembl Show fit	Yip1 interacting factor homolog B, membrane trafficking protein
chr1_+_88182155 Show fit	0.04	ENSRNOT00000083176	Yif1b Links NCBI RGD Ensembl Show fit	Yip1 interacting factor homolog B, membrane trafficking protein
chr7_-_143793774 Show fit	0.04	ENSRNOT00000079678	Csad Links NCBI RGD Ensembl Show fit	cysteine sulfinic acid decarboxylase
chr3_+_149624712 Show fit	0.04	ENSRNOT00000018581	Bpifa1 Links NCBI RGD Ensembl Show fit	BPI fold containing family A, member 1
chr1_+_87180624 Show fit	0.03	ENSRNOT00000056933 ENSRNOT00000027987	LOC103689986 Links NCBI RGD Ensembl Show fit	protein YIF1B
chr7_-_73270308 Show fit	0.03	ENSRNOT00000007430	Rida Links NCBI RGD Ensembl Show fit	reactive intermediate imine deaminase A homolog
chr4_-_145390447 Show fit	0.03	ENSRNOT00000091965 ENSRNOT00000012136	Cidec Links NCBI RGD Ensembl Show fit	cell death-inducing DFFA-like effector c
chr15_-_56970365 Show fit	0.03	ENSRNOT00000047192	Lrch1 Links NCBI RGD Ensembl Show fit	leucine rich repeats and calponin homology domain containing 1
chr20_-_31956649 Show fit	0.02	ENSRNOT00000072429	Hk1 Links NCBI RGD Ensembl Show fit	hexokinase 1
chr8_+_50559126 Show fit	0.02	ENSRNOT00000024918	Apoa5 Links NCBI RGD Ensembl Show fit	apolipoprotein A5
chr11_-_64968437 Show fit	0.02	ENSRNOT00000059541	Cox17 Links NCBI RGD Ensembl Show fit	COX17 cytochrome c oxidase copper chaperone
chr8_-_65587658 Show fit	0.02	ENSRNOT00000091982	Lrrc49 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 49
chr5_-_50193571 Show fit	0.02	ENSRNOT00000051243	Cfap206 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 206
chr20_+_3827367 Show fit	0.02	ENSRNOT00000079967	Rxrb Links NCBI RGD Ensembl Show fit	retinoid X receptor beta
chr12_-_22006533 Show fit	0.02	ENSRNOT00000059593	LOC100362783 Links NCBI RGD Ensembl Show fit	Uncharacterized protein C7orf61 homolog
chr13_+_47454591 Show fit	0.02	ENSRNOT00000005791	LOC498222 Links NCBI RGD Ensembl Show fit	similar to specifically androgen-regulated protein
chr1_+_221538104 Show fit	0.02	ENSRNOT00000028527	Batf2 Links NCBI RGD Ensembl Show fit	basic leucine zipper ATF-like transcription factor 2
chr7_-_139223116 Show fit	0.02	ENSRNOT00000086559	Endou Links NCBI RGD Ensembl Show fit	endonuclease, poly(U)-specific
chr8_-_13420439 Show fit	0.02	ENSRNOT00000051471	Izumo1r Links NCBI RGD Ensembl Show fit	IZUMO1 receptor, JUNO
chr14_+_85230648 Show fit	0.02	ENSRNOT00000089866	Ap1b1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 1, beta 1 subunit
chr8_-_50277797 Show fit	0.01	ENSRNOT00000082508	Pafah1b2 Links NCBI RGD Ensembl Show fit	platelet-activating factor acetylhydrolase 1b, catalytic subunit 2
chr13_+_75111778 Show fit	0.01	ENSRNOT00000006924	Tp53i3 Links NCBI RGD Ensembl Show fit	tumor protein p53 inducible protein 3
chr3_-_122813583 Show fit	0.01	ENSRNOT00000009681	Idh3B Links NCBI RGD Ensembl Show fit	isocitrate dehydrogenase 3 (NAD+) beta
chr6_-_26051229 Show fit	0.01	ENSRNOT00000005855	Bre Links NCBI RGD Ensembl Show fit	brain and reproductive organ-expressed (TNFRSF1A modulator)
chr1_+_162447680 Show fit	0.01	ENSRNOT00000016770	Ints4 Links NCBI RGD Ensembl Show fit	integrator complex subunit 4
chrX_+_105537602 Show fit	0.01	ENSRNOT00000029833	Armcx1 Links NCBI RGD Ensembl Show fit	armadillo repeat containing, X-linked 1
chr4_-_11610518 Show fit	0.01	ENSRNOT00000066643	Magi2 Links NCBI RGD Ensembl Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 2
chr4_+_147514120 Show fit	0.01	ENSRNOT00000013146	Mkrn2 Links NCBI RGD Ensembl Show fit	makorin, ring finger protein, 2
chr15_-_4057104 Show fit	0.01	ENSRNOT00000084350 ENSRNOT00000012270	Sec24c Links NCBI RGD Ensembl Show fit	SEC24 homolog C, COPII coat complex component
chr10_+_14216155 Show fit	0.01	ENSRNOT00000020192	Hagh Links NCBI RGD Ensembl Show fit	hydroxyacyl glutathione hydrolase
chr11_-_84037938 Show fit	0.01	ENSRNOT00000002327	Abcf3 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily F member 3
chr16_+_20432899 Show fit	0.01	ENSRNOT00000026271	Mpv17l2 Links NCBI RGD Ensembl Show fit	MPV17 mitochondrial inner membrane protein like 2
chr6_-_124429701 Show fit	0.01	ENSRNOT00000037902 ENSRNOT00000080950	Ttc7b Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 7B
chr6_+_111049559 Show fit	0.01	ENSRNOT00000015571	Tmem63c Links NCBI RGD Ensembl Show fit	transmembrane protein 63c
chr19_+_41932221 Show fit	0.01	ENSRNOT00000059225	LOC103694328 Links NCBI RGD Ensembl Show fit	alanine and glycine-rich protein-like
chr8_-_118436894 Show fit	0.01	ENSRNOT00000073395	LOC100911807 Links NCBI RGD Ensembl Show fit	ATR-interacting protein-like
chr10_-_56444847 Show fit	0.01	ENSRNOT00000056872 ENSRNOT00000092662	Nlgn2 Links NCBI RGD Ensembl Show fit	neuroligin 2
chr10_-_77512032 Show fit	0.01	ENSRNOT00000003295	Pctp Links NCBI RGD Ensembl Show fit	phosphatidylcholine transfer protein
chr5_+_159993799 Show fit	0.01	ENSRNOT00000014399	Zbtb17 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 17
chr1_+_16819170 Show fit	0.01	ENSRNOT00000019734 ENSRNOT00000086756	Hbs1l Links NCBI RGD Ensembl Show fit	HBS1-like translational GTPase
chr7_+_73270455 Show fit	0.00	ENSRNOT00000007190	Pop1 Links NCBI RGD Ensembl Show fit	POP1 homolog, ribonuclease P/MRP subunit
chr4_-_17594598 Show fit	0.00	ENSRNOT00000008936	Sema3e Links NCBI RGD Ensembl Show fit	semaphorin 3E
chr17_+_76410585 Show fit	0.00	ENSRNOT00000024016	Cdc123 Links NCBI RGD Ensembl Show fit	cell division cycle 123
chr18_+_48434652 Show fit	0.00	ENSRNOT00000047755	Prdm6 Links NCBI RGD Ensembl Show fit	PR/SET domain 6
chr7_+_30699476 Show fit	0.00	ENSRNOT00000059269	Anks1b Links NCBI RGD Ensembl Show fit	ankyrin repeat and sterile alpha motif domain containing 1B
chr13_+_89253617 Show fit	0.00	ENSRNOT00000044575	LOC100362384 Links NCBI RGD Ensembl Show fit	ferritin light chain 1-like
chr12_-_21746236 Show fit	0.00	ENSRNOT00000001869	LOC102550456 Links NCBI RGD Ensembl Show fit	TSC22 domain family protein 4-like
chr10_+_13410899 Show fit	0.00	ENSRNOT00000007392 ENSRNOT00000070981	Prss27 Links NCBI RGD Ensembl Show fit	protease, serine 27
chr2_-_123193130 Show fit	0.00	ENSRNOT00000019554	Anxa5 Links NCBI RGD Ensembl Show fit	annexin A5
chr7_-_101138373 Show fit	0.00	ENSRNOT00000043257	LOC500877 Links NCBI RGD Ensembl Show fit	Ab1-152
chr13_-_52197205 Show fit	0.00	ENSRNOT00000009712	Shisa4 Links NCBI RGD Ensembl Show fit	shisa family member 4
chr12_+_22142520 Show fit	0.00	ENSRNOT00000038397	Fbxo24 Links NCBI RGD Ensembl Show fit	F-box protein 24
chr10_-_14215957 Show fit	0.00	ENSRNOT00000019767	Fahd1 Links NCBI RGD Ensembl Show fit	fumarylacetoacetate hydrolase domain containing 1
chr10_+_10774639 Show fit	0.00	ENSRNOT00000061208	Sept12 Links NCBI RGD Ensembl Show fit	septin 12
chr2_+_188543137 Show fit	0.00	ENSRNOT00000027850	Muc1 Links NCBI RGD Ensembl Show fit	mucin 1, cell surface associated
chr10_+_90348299 Show fit	0.00	ENSRNOT00000089616	Rundc3a Links NCBI RGD Ensembl Show fit	RUN domain containing 3A
chr7_+_130532435 Show fit	0.00	ENSRNOT00000092672 ENSRNOT00000092535	Shank3 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 3
chr12_+_2579887 Show fit	0.00	ENSRNOT00000068586 ENSRNOT00000043197	Prr36 Links NCBI RGD Ensembl Show fit	proline rich 36
chr1_-_64350338 Show fit	0.00	ENSRNOT00000078444	Cacng8 Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel auxiliary subunit gamma 8
chr17_-_76410294 Show fit	0.00	ENSRNOT00000023892	Nudt5 Links NCBI RGD Ensembl Show fit	nudix hydrolase 5
chr1_-_173682226 Show fit	0.00	ENSRNOT00000020137	Ric3 Links NCBI RGD Ensembl Show fit	RIC3 acetylcholine receptor chaperone
chr20_+_6397022 Show fit	0.00	ENSRNOT00000002553	Rab44 Links NCBI RGD Ensembl Show fit	RAB44, member RAS oncogene family

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0042412	taurine biosynthetic process(GO:0042412)
0.0	0.0	GO:0050828	regulation of liquid surface tension(GO:0050828)