GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Scrt2 Links NCBI RGD Ensembl	ENSRNOG00000005148	scratch family transcriptional repressor 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Scrt2	rn6_v1_chr3_+_147585947_147585947	-0.26	6.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_+_49676540 Show fit	0.18	ENSRNOT00000022032 ENSRNOT00000082205	Fxyd6 Links NCBI RGD Ensembl Show fit	FXYD domain-containing ion transport regulator 6
chr1_+_53220397 Show fit	0.13	ENSRNOT00000089989	AABR07001573.1 Links NCBI RGD Ensembl Show fit
chr16_-_19942343 Show fit	0.12	ENSRNOT00000087162 ENSRNOT00000091906	Bst2 Links NCBI RGD Ensembl Show fit	bone marrow stromal cell antigen 2
chr1_-_15301998 Show fit	0.12	ENSRNOT00000016400	Slc35d3 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member D3
chr1_+_78820262 Show fit	0.11	ENSRNOT00000022441	Gng8 Links NCBI RGD Ensembl Show fit	G protein subunit gamma 8
chr2_+_121165137 Show fit	0.09	ENSRNOT00000016236	Sox2 Links NCBI RGD Ensembl Show fit	SRY box 2
chr20_-_47306318 Show fit	0.09	ENSRNOT00000075151	Nr2e1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group E, member 1
chr15_+_67555835 Show fit	0.09	ENSRNOT00000045882	Pcdh17 Links NCBI RGD Ensembl Show fit	protocadherin 17
chr3_+_100768637 Show fit	0.09	ENSRNOT00000083542	Bdnf Links NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr12_+_2534212 Show fit	0.08	ENSRNOT00000001399	Ctxn1 Links NCBI RGD Ensembl Show fit	cortexin 1
chr1_-_188101566 Show fit	0.08	ENSRNOT00000092435	Syt17 Links NCBI RGD Ensembl Show fit	synaptotagmin 17
chr1_+_242959488 Show fit	0.08	ENSRNOT00000015668	Dock8 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 8
chr1_+_205842489 Show fit	0.08	ENSRNOT00000081610	Fank1 Links NCBI RGD Ensembl Show fit	fibronectin type 3 and ankyrin repeat domains 1
chr10_+_3225481 Show fit	0.07	ENSRNOT00000093598	Ntan1 Links NCBI RGD Ensembl Show fit	N-terminal asparagine amidase
chr4_-_146839397 Show fit	0.07	ENSRNOT00000010338	Vgll4 Links NCBI RGD Ensembl Show fit	vestigial-like family member 4
chr2_+_28049217 Show fit	0.07	ENSRNOT00000022144	Enc1 Links NCBI RGD Ensembl Show fit	ectodermal-neural cortex 1
chr2_+_209766512 Show fit	0.07	ENSRNOT00000092240	Kcna3 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily A member 3
chrX_-_123254557 Show fit	0.06	ENSRNOT00000039809	Akap17b Links NCBI RGD Ensembl Show fit	A kinase (PRKA) anchor protein 17B
chr1_+_106896790 Show fit	0.06	ENSRNOT00000042952 ENSRNOT00000064193	Ano5 Links NCBI RGD Ensembl Show fit	anoctamin 5
chr2_-_210874304 Show fit	0.06	ENSRNOT00000088657	Ampd2 Links NCBI RGD Ensembl Show fit	adenosine monophosphate deaminase 2
chr1_+_167320797 Show fit	0.06	ENSRNOT00000076923	Pgap2 Links NCBI RGD Ensembl Show fit	post-GPI attachment to proteins 2
chr13_+_101698096 Show fit	0.06	ENSRNOT00000089309	Aida Links NCBI RGD Ensembl Show fit	axin interactor, dorsalization associated
chr6_+_86785771 Show fit	0.06	ENSRNOT00000066702	Prpf39 Links NCBI RGD Ensembl Show fit	pre-mRNA processing factor 39
chr10_-_13898855 Show fit	0.06	ENSRNOT00000004249	Rab26 Links NCBI RGD Ensembl Show fit	RAB26, member RAS oncogene family
chr7_-_59514939 Show fit	0.06	ENSRNOT00000085579	Kcnmb4 Links NCBI RGD Ensembl Show fit	potassium calcium-activated channel subfamily M regulatory beta subunit 4
chr1_-_199624783 Show fit	0.06	ENSRNOT00000026908	Cox6a2 Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 6A2
chr20_+_37876650 Show fit	0.06	ENSRNOT00000001054	Gja1 Links NCBI RGD Ensembl Show fit	gap junction protein, alpha 1
chr14_-_43143973 Show fit	0.05	ENSRNOT00000003248	Uchl1 Links NCBI RGD Ensembl Show fit	ubiquitin C-terminal hydrolase L1
chrX_-_70978952 Show fit	0.05	ENSRNOT00000076910	Slc7a3 Links NCBI RGD Ensembl Show fit	solute carrier family 7 member 3
chr17_+_57074525 Show fit	0.05	ENSRNOT00000020012 ENSRNOT00000074146	Crem Links NCBI RGD Ensembl Show fit	cAMP responsive element modulator
chr20_+_5050327 Show fit	0.05	ENSRNOT00000083353	Ddah2 Links NCBI RGD Ensembl Show fit	dimethylarginine dimethylaminohydrolase 2
chr7_+_12974169 Show fit	0.05	ENSRNOT00000010555	C2cd4c Links NCBI RGD Ensembl Show fit	C2 calcium-dependent domain containing 4C
chrX_-_70978714 Show fit	0.05	ENSRNOT00000076336	Slc7a3 Links NCBI RGD Ensembl Show fit	solute carrier family 7 member 3
chr3_-_113405829 Show fit	0.05	ENSRNOT00000036823	Ell3 Links NCBI RGD Ensembl Show fit	elongation factor for RNA polymerase II 3
chrX_-_104814145 Show fit	0.05	ENSRNOT00000004909	Sytl4 Links NCBI RGD Ensembl Show fit	synaptotagmin-like 4
chr2_-_119537837 Show fit	0.05	ENSRNOT00000015200	Pex5l Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 5-like
chrX_-_23649466 Show fit	0.04	ENSRNOT00000059431	Shroom2 Links NCBI RGD Ensembl Show fit	shroom family member 2
chr12_+_22153983 Show fit	0.04	ENSRNOT00000080775 ENSRNOT00000001894	Pcolce Links NCBI RGD Ensembl Show fit	procollagen C-endopeptidase enhancer
chr4_+_158243086 Show fit	0.04	ENSRNOT00000032112	Ano2 Links NCBI RGD Ensembl Show fit	anoctamin 2
chr17_+_57075218 Show fit	0.04	ENSRNOT00000089536	Crem Links NCBI RGD Ensembl Show fit	cAMP responsive element modulator
chr1_-_82120902 Show fit	0.04	ENSRNOT00000027684	Erf Links NCBI RGD Ensembl Show fit	Ets2 repressor factor
chr19_-_25261911 Show fit	0.04	ENSRNOT00000045180 ENSRNOT00000009806	Cc2d1a Links NCBI RGD Ensembl Show fit	coiled-coil and C2 domain containing 1A
chr8_-_22874637 Show fit	0.04	ENSRNOT00000064551 ENSRNOT00000090424	Dock6 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 6
chr1_+_221704493 Show fit	0.04	ENSRNOT00000028592	Men1 Links NCBI RGD Ensembl Show fit	menin 1
chr7_+_94130852 Show fit	0.04	ENSRNOT00000011485	Mal2 Links NCBI RGD Ensembl Show fit	mal, T-cell differentiation protein 2
chr14_-_86164341 Show fit	0.04	ENSRNOT00000086343 ENSRNOT00000080147	Gck Links NCBI RGD Ensembl Show fit	glucokinase
chr1_-_167911961 Show fit	0.04	ENSRNOT00000025097	Olr59 Links NCBI RGD Ensembl Show fit	olfactory receptor 59
chr18_+_65285318 Show fit	0.04	ENSRNOT00000020431	Tcf4 Links NCBI RGD Ensembl Show fit	transcription factor 4
chr3_+_156662114 Show fit	0.03	ENSRNOT00000041390 ENSRNOT00000086260	Top1 Links NCBI RGD Ensembl Show fit	topoisomerase (DNA) I
chr18_-_79258570 Show fit	0.03	ENSRNOT00000022401	Galr1 Links NCBI RGD Ensembl Show fit	galanin receptor 1
chr1_-_189199376 Show fit	0.03	ENSRNOT00000021027	Umod Links NCBI RGD Ensembl Show fit	uromodulin
chr7_-_90318221 Show fit	0.03	ENSRNOT00000050774	Trps1 Links NCBI RGD Ensembl Show fit	transcriptional repressor GATA binding 1
chr9_-_19372673 Show fit	0.03	ENSRNOT00000073667 ENSRNOT00000079517	Clic5 Links NCBI RGD Ensembl Show fit	chloride intracellular channel 5
chr3_-_16537433 Show fit	0.03	ENSRNOT00000048523	AABR07051533.2 Links NCBI RGD Ensembl Show fit
chr13_+_103396314 Show fit	0.03	ENSRNOT00000049499	Slc30a10 Links NCBI RGD Ensembl Show fit	solute carrier family 30, member 10
chr8_+_4440876 Show fit	0.03	ENSRNOT00000049325 ENSRNOT00000076529 ENSRNOT00000076748	Pdgfd Links NCBI RGD Ensembl Show fit	platelet derived growth factor D
chr1_+_198528635 Show fit	0.03	ENSRNOT00000022765	LOC308990 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC308990
chr4_-_150829741 Show fit	0.03	ENSRNOT00000051846 ENSRNOT00000052017	Cacna1c Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel subunit alpha1 C
chr1_-_80311043 Show fit	0.03	ENSRNOT00000068092	Klc3 Links NCBI RGD Ensembl Show fit	kinesin light chain 3
chr5_-_147375009 Show fit	0.03	ENSRNOT00000009436	S100pbp Links NCBI RGD Ensembl Show fit	S100P binding protein
chrX_+_17171605 Show fit	0.02	ENSRNOT00000048236	Nudt10 Links NCBI RGD Ensembl Show fit	nudix (nucleoside diphosphate linked moiety X)-type motif 10
chr12_-_9864791 Show fit	0.02	ENSRNOT00000073026	Gtf3a Links NCBI RGD Ensembl Show fit	general transcription factor III A
chr10_-_15211325 Show fit	0.02	ENSRNOT00000027083	Rhot2 Links NCBI RGD Ensembl Show fit	ras homolog family member T2
chr10_+_55555089 Show fit	0.02	ENSRNOT00000006597	Slc25a35 Links NCBI RGD Ensembl Show fit	solute carrier family 25, member 35
chr8_+_62341613 Show fit	0.02	ENSRNOT00000066923	Scamp2 Links NCBI RGD Ensembl Show fit	secretory carrier membrane protein 2
chr4_+_65637407 Show fit	0.02	ENSRNOT00000047954	Trim24 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 24
chr2_-_104958034 Show fit	0.02	ENSRNOT00000080699	Gyg1 Links NCBI RGD Ensembl Show fit	glycogenin 1
chr4_-_132740938 Show fit	0.02	ENSRNOT00000007185	Rybp Links NCBI RGD Ensembl Show fit	RING1 and YY1 binding protein
chr5_+_13379772 Show fit	0.02	ENSRNOT00000010032	Npbwr1 Links NCBI RGD Ensembl Show fit	neuropeptides B/W receptor 1
chr2_-_142885604 Show fit	0.02	ENSRNOT00000031487	Frem2 Links NCBI RGD Ensembl Show fit	Fras1 related extracellular matrix protein 2
chr1_-_253185533 Show fit	0.02	ENSRNOT00000067822	Pank1 Links NCBI RGD Ensembl Show fit	pantothenate kinase 1
chr2_-_188412329 Show fit	0.02	ENSRNOT00000033917 ENSRNOT00000080185	Fdps Links NCBI RGD Ensembl Show fit	farnesyl diphosphate synthase
chr19_+_52077501 Show fit	0.02	ENSRNOT00000079240	Osgin1 Links NCBI RGD Ensembl Show fit	oxidative stress induced growth inhibitor 1
chr13_-_42263024 Show fit	0.02	ENSRNOT00000004741	Lypd1 Links NCBI RGD Ensembl Show fit	Ly6/Plaur domain containing 1
chr6_-_127630734 Show fit	0.01	ENSRNOT00000089931	Serpina1 Links NCBI RGD Ensembl Show fit	serpin family A member 1
chr10_-_11901765 Show fit	0.01	ENSRNOT00000009936 ENSRNOT00000075238	Naa60 Links NCBI RGD Ensembl Show fit	N(alpha)-acetyltransferase 60, NatF catalytic subunit
chr1_-_205842428 Show fit	0.01	ENSRNOT00000024655	Dhx32 Links NCBI RGD Ensembl Show fit	DEAH-box helicase 32 (putative)
chrX_+_16337102 Show fit	0.01	ENSRNOT00000003954	Ccnb3 Links NCBI RGD Ensembl Show fit	cyclin B3
chr2_-_29121104 Show fit	0.01	ENSRNOT00000020543	Tnpo1 Links NCBI RGD Ensembl Show fit	transportin 1
chr10_+_91710495 Show fit	0.01	ENSRNOT00000033276	Rprml Links NCBI RGD Ensembl Show fit	reprimo-like
chr9_-_85243001 Show fit	0.01	ENSRNOT00000020219	Scg2 Links NCBI RGD Ensembl Show fit	secretogranin II
chr1_-_79690434 Show fit	0.01	ENSRNOT00000057986 ENSRNOT00000057988	LOC102557319 Links NCBI RGD Ensembl Show fit	carcinoembryonic antigen-related cell adhesion molecule 3-like
chr2_+_227455722 Show fit	0.01	ENSRNOT00000064809	Sec24d Links NCBI RGD Ensembl Show fit	SEC24 homolog D, COPII coat complex component
chr4_-_150829913 Show fit	0.01	ENSRNOT00000041571	Cacna1c Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel subunit alpha1 C
chr1_+_166125474 Show fit	0.01	ENSRNOT00000091822	Fchsd2 Links NCBI RGD Ensembl Show fit	FCH and double SH3 domains 2
chr18_+_39172028 Show fit	0.01	ENSRNOT00000086651	Kcnn2 Links NCBI RGD Ensembl Show fit	potassium calcium-activated channel subfamily N member 2
chrX_+_53360839 Show fit	0.01	ENSRNOT00000091467 ENSRNOT00000034372 ENSRNOT00000081061	Dmd Links NCBI RGD Ensembl Show fit	dystrophin
chr10_+_11912543 Show fit	0.01	ENSRNOT00000045192	Zfp597 Links NCBI RGD Ensembl Show fit	zinc finger protein 597
chr10_+_74886985 Show fit	0.01	ENSRNOT00000009943	Mtmr4 Links NCBI RGD Ensembl Show fit	myotubularin related protein 4
chr9_+_71398710 Show fit	0.01	ENSRNOT00000049411	Ccnyl1 Links NCBI RGD Ensembl Show fit	cyclin Y-like 1
chr7_+_83373022 Show fit	0.01	ENSRNOT00000057146 ENSRNOT00000005958	Pkhd1l1 Links NCBI RGD Ensembl Show fit	polycystic kidney and hepatic disease 1-like 1
chr13_+_50873605 Show fit	0.01	ENSRNOT00000004382	Fmod Links NCBI RGD Ensembl Show fit	fibromodulin
chr11_-_67037115 Show fit	0.01	ENSRNOT00000003137	Ildr1 Links NCBI RGD Ensembl Show fit	immunoglobulin-like domain containing receptor 1
chr14_-_78308933 Show fit	0.01	ENSRNOT00000065334	Crmp1 Links NCBI RGD Ensembl Show fit	collapsin response mediator protein 1
chr11_+_46793777 Show fit	0.00	ENSRNOT00000002232	Adgrg7 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor G7
chr20_+_31102476 Show fit	0.00	ENSRNOT00000078719	Lrrc20 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 20
chr3_-_160139947 Show fit	0.00	ENSRNOT00000014151	Ada Links NCBI RGD Ensembl Show fit	adenosine deaminase
chr1_+_193335645 Show fit	0.00	ENSRNOT00000019640	Lcmt1 Links NCBI RGD Ensembl Show fit	leucine carboxyl methyltransferase 1
chr2_-_227160379 Show fit	0.00	ENSRNOT00000066581	Usp53 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 53
chr5_+_28480023 Show fit	0.00	ENSRNOT00000075067 ENSRNOT00000093754	LOC100912373 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100912373

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002731	negative regulation of dendritic cell cytokine production(GO:0002731) regulation of intracellular transport of viral material(GO:1901252)
0.0	0.1	GO:0019236	response to pheromone(GO:0019236)
0.0	0.1	GO:0071698	olfactory placode formation(GO:0030910) olfactory placode development(GO:0071698) olfactory placode morphogenesis(GO:0071699)
0.0	0.1	GO:1903401	L-lysine transmembrane transport(GO:1903401)
0.0	0.1	GO:0010643	cell communication by chemical coupling(GO:0010643)
0.0	0.1	GO:0010499	proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0	0.1	GO:0060164	regulation of timing of neuron differentiation(GO:0060164)
0.0	0.1	GO:0007412	axon target recognition(GO:0007412)
0.0	0.0	GO:0009732	detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594)
0.0	0.0	GO:1900135	positive regulation of renin secretion into blood stream(GO:1900135)
0.0	0.1	GO:0070863	positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.0	0.1	GO:0032264	IMP salvage(GO:0032264)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0016403	dimethylargininase activity(GO:0016403)
0.0	0.1	GO:0015189	L-lysine transmembrane transporter activity(GO:0015189)
0.0	0.1	GO:0003876	AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623)
0.0	0.1	GO:0019002	GMP binding(GO:0019002)
0.0	0.1	GO:0031694	alpha-2A adrenergic receptor binding(GO:0031694)
0.0	0.0	GO:0001011	transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087)
0.0	0.1	GO:1903763	gap junction channel activity involved in cell communication by electrical coupling(GO:1903763)
0.0	0.1	GO:0005169	neurotrophin TRKB receptor binding(GO:0005169)
0.0	0.1	GO:0008191	metalloendopeptidase inhibitor activity(GO:0008191)
0.0	0.0	GO:0000403	Y-form DNA binding(GO:0000403)