ISMARA results: Sox1

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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Sox1

Z-value: 0.20

Motif logo

Transcription factors associated with Sox1

Gene Symbol	Gene ID	Gene Info

Activity profile of Sox1 motif

Sorted Z-values of Sox1 motif

Top targets:

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr13_-_89565813 Show fit	0.07	ENSRNOT00000004347	Pcp4l1 NCBI RGD Ensembl Show fit	Purkinje cell protein 4-like 1
chr4_-_10517832 Show fit	0.06	ENSRNOT00000039953 ENSRNOT00000083964	Gsap NCBI RGD Ensembl Show fit	gamma-secretase activating protein
chr16_+_3293599 Show fit	0.04	ENSRNOT00000081999 ENSRNOT00000047118 ENSRNOT00000020427	Erc2 NCBI RGD Ensembl Show fit	ELKS/RAB6-interacting/CAST family member 2
chr3_-_177201525 Show fit	0.04	ENSRNOT00000022451	Rgs19 NCBI RGD Ensembl Show fit	regulator of G-protein signaling 19
chr13_+_91054974 Show fit	0.04	ENSRNOT00000091089	Crp NCBI RGD Ensembl Show fit	C-reactive protein
chr19_-_36157924 Show fit	0.03	ENSRNOT00000072022	AABR07043701.1 NCBI RGD Ensembl Show fit
chr9_-_43454078 Show fit	0.03	ENSRNOT00000023550	Tmem131 NCBI RGD Ensembl Show fit	transmembrane protein 131
chr17_-_22143324 Show fit	0.03	ENSRNOT00000019361	Edn1 NCBI RGD Ensembl Show fit	endothelin 1
chr10_-_90940118 Show fit	0.02	ENSRNOT00000093143	Eftud2 NCBI RGD Ensembl Show fit	elongation factor Tu GTP binding domain containing 2
chr6_+_144071914 Show fit	0.02	ENSRNOT00000056743	LOC102547216 NCBI RGD Ensembl Show fit	uncharacterized LOC102547216
chr4_-_65962539 Show fit	0.02	ENSRNOT00000040391	RGD1306271 NCBI RGD Ensembl Show fit	similar to KIAA1549 protein
chr10_-_13826945 Show fit	0.02	ENSRNOT00000012506	E4f1 NCBI RGD Ensembl Show fit	E4F transcription factor 1
chr19_+_51317425 Show fit	0.02	ENSRNOT00000019298	Cdh13 NCBI RGD Ensembl Show fit	cadherin 13
chr7_+_2529077 Show fit	0.02	ENSRNOT00000079383	Baz2a NCBI RGD Ensembl Show fit	bromodomain adjacent to zinc finger domain, 2A
chr8_+_23771920 Show fit	0.02	ENSRNOT00000020481	Bbs9 NCBI RGD Ensembl Show fit	Bardet-Biedl syndrome 9
chr20_+_4959294 Show fit	0.02	ENSRNOT00000074223	Hspa1l NCBI RGD Ensembl Show fit	heat shock protein family A (Hsp70) member 1 like
chr10_+_53740841 Show fit	0.02	ENSRNOT00000004295	Myh2 NCBI RGD Ensembl Show fit	myosin heavy chain 2
chr10_-_36502313 Show fit	0.02	ENSRNOT00000041273	LOC679794 NCBI RGD Ensembl Show fit	similar to Cytochrome c, somatic
chrX_+_35869538 Show fit	0.02	ENSRNOT00000058947	Ppef1 NCBI RGD Ensembl Show fit	protein phosphatase with EF-hand domain 1
chr19_+_14835822 Show fit	0.02	ENSRNOT00000072804	1700007B14Rik NCBI RGD Ensembl Show fit	RIKEN cDNA 1700007B14 gene
chr2_+_263895241 Show fit	0.02	ENSRNOT00000014126 ENSRNOT00000014034	Ptger3 NCBI RGD Ensembl Show fit	prostaglandin E receptor 3
chr10_+_31324512 Show fit	0.01	ENSRNOT00000008559	Fndc9 NCBI RGD Ensembl Show fit	fibronectin type III domain containing 9
chr1_-_183630695 Show fit	0.01	ENSRNOT00000036330	AABR07005506.1 NCBI RGD Ensembl Show fit
chr5_-_162602339 Show fit	0.01	ENSRNOT00000071779	RGD1563334 NCBI RGD Ensembl Show fit	similar to novel protein similar to esterases
chr9_+_118842787 Show fit	0.01	ENSRNOT00000090512	Dlgap1 NCBI RGD Ensembl Show fit	DLG associated protein 1
chr10_+_71536533 Show fit	0.01	ENSRNOT00000088138	Acaca NCBI RGD Ensembl Show fit	acetyl-CoA carboxylase alpha
chr18_-_62476700 Show fit	0.01	ENSRNOT00000048429	Cycs NCBI RGD Ensembl Show fit	cytochrome c, somatic
chr18_-_41899450 Show fit	0.01	ENSRNOT00000057099	RGD1561114 NCBI RGD Ensembl Show fit	similar to hypothetical protein 4930474N05
chr1_-_2017488 Show fit	0.01	ENSRNOT00000021905	Tab2 NCBI RGD Ensembl Show fit	TGF-beta activated kinase 1/MAP3K7 binding protein 2
chr18_+_27114822 Show fit	0.01	ENSRNOT00000027418	Srp19 NCBI RGD Ensembl Show fit	signal recognition particle 19
chr14_-_21615488 Show fit	0.01	ENSRNOT00000002667	Vcsa2 NCBI RGD Ensembl Show fit	variable coding sequence A2
chr10_-_109827143 Show fit	0.01	ENSRNOT00000054948	Myadml2 NCBI RGD Ensembl Show fit	myeloid-associated differentiation marker-like 2
chr18_-_16497886 Show fit	0.01	ENSRNOT00000021624	Rprd1a NCBI RGD Ensembl Show fit	regulation of nuclear pre-mRNA domain containing 1A
chr12_+_45319501 Show fit	0.01	ENSRNOT00000090630 ENSRNOT00000041732	RGD1561114 NCBI RGD Ensembl Show fit	similar to hypothetical protein 4930474N05
chr7_+_34744483 Show fit	0.01	ENSRNOT00000007465	Usp44 NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 44
chr8_+_133210473 Show fit	0.01	ENSRNOT00000082774	Ccr5 NCBI RGD Ensembl Show fit	chemokine (C-C motif) receptor 5
chr3_+_63510293 Show fit	0.01	ENSRNOT00000058093	Dfnb59 NCBI RGD Ensembl Show fit	deafness, autosomal recessive 59
chr3_-_72052990 Show fit	0.01	ENSRNOT00000064009 ENSRNOT00000081400	Ctnnd1 NCBI RGD Ensembl Show fit	catenin delta 1
chr2_+_118831350 Show fit	0.01	ENSRNOT00000083720	Pik3ca NCBI RGD Ensembl Show fit	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
chr10_-_59762644 Show fit	0.00	ENSRNOT00000083390	Ctns NCBI RGD Ensembl Show fit	cystinosin, lysosomal cystine transporter
chr14_-_21553949 Show fit	0.00	ENSRNOT00000031642	Smr3b NCBI RGD Ensembl Show fit	submaxillary gland androgen regulated protein 3B
chrX_+_106360393 Show fit	0.00	ENSRNOT00000004260	Gprasp2 NCBI RGD Ensembl Show fit	G protein-coupled receptor associated sorting protein 2
chr7_-_12569110 Show fit	0.00	ENSRNOT00000093446 ENSRNOT00000016733	Wdr18 NCBI RGD Ensembl Show fit	WD repeat domain 18
chr1_+_142136452 Show fit	0.00	ENSRNOT00000016445	Hddc3 NCBI RGD Ensembl Show fit	HD domain containing 3
chr17_-_44841382 Show fit	0.00	ENSRNOT00000080119	Hist1h2ak NCBI RGD Ensembl Show fit	histone cluster 1, H2ak
chr7_+_34402738 Show fit	0.00	ENSRNOT00000030985	Ccdc38 NCBI RGD Ensembl Show fit	coiled-coil domain containing 38
chr3_+_150188455 Show fit	0.00	ENSRNOT00000072917	AABR07054370.1 NCBI RGD Ensembl Show fit
chr8_+_48657795 Show fit	0.00	ENSRNOT00000013134	Dpagt1 NCBI RGD Ensembl Show fit	dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
chr20_+_27129291 Show fit	0.00	ENSRNOT00000031053	AABR07044933.1 NCBI RGD Ensembl Show fit
chr17_-_15030364 Show fit	0.00	ENSRNOT00000044543	Nutm2f NCBI RGD Ensembl Show fit	NUT family member 2F

Network of associatons between targets according to the STRING database.

First level regulatory network of Sox1

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Results for Sox1

Z-value: 0.20

Motif logo

Transcription factors associated with Sox1

Activity profile of Sox1 motif

Sorted Z-values of Sox1 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Sox1

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Gene Ontology Analysis