GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Sox11 Links NCBI RGD Ensembl	ENSRNOG00000030034	SRY box 11

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Sox11	rn6_v1_chr6_-_46631983_46631983	0.48	4.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_10335499 Show fit	0.19	ENSRNOT00000071567	Wasf3 Links NCBI RGD Ensembl Show fit	WAS protein family, member 3
chr1_-_277902279 Show fit	0.14	ENSRNOT00000078416	Ablim1 Links NCBI RGD Ensembl Show fit	actin-binding LIM protein 1
chr18_+_14471213 Show fit	0.11	ENSRNOT00000045224	Dtna Links NCBI RGD Ensembl Show fit	dystrobrevin, alpha
chr10_-_58771908 Show fit	0.09	ENSRNOT00000018808	RGD1304728 Links NCBI RGD Ensembl Show fit	similar to 4933427D14Rik protein
chr10_-_35800120 Show fit	0.08	ENSRNOT00000004361	Maml1 Links NCBI RGD Ensembl Show fit	mastermind-like transcriptional coactivator 1
chr6_-_106971250 Show fit	0.08	ENSRNOT00000010926	Dpf3 Links NCBI RGD Ensembl Show fit	double PHD fingers 3
chr1_-_235405831 Show fit	0.08	ENSRNOT00000071578	AABR07006458.1 Links NCBI RGD Ensembl Show fit
chr16_+_60925093 Show fit	0.08	ENSRNOT00000015813	Tnks Links NCBI RGD Ensembl Show fit	tankyrase
chr6_-_76552559 Show fit	0.08	ENSRNOT00000065230	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr16_+_50152008 Show fit	0.07	ENSRNOT00000019237	Klkb1 Links NCBI RGD Ensembl Show fit	kallikrein B1
chr19_-_17494516 Show fit	0.07	ENSRNOT00000078786 ENSRNOT00000076138	Chd9 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 9
chr4_-_11497531 Show fit	0.07	ENSRNOT00000078799	Magi2 Links NCBI RGD Ensembl Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 2
chr16_-_74020437 Show fit	0.06	ENSRNOT00000037389	Kat6a Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 6A
chr2_+_185846232 Show fit	0.06	ENSRNOT00000023418	Lrba Links NCBI RGD Ensembl Show fit	LPS responsive beige-like anchor protein
chr2_+_4989295 Show fit	0.06	ENSRNOT00000041541	Fam172a Links NCBI RGD Ensembl Show fit	family with sequence similarity 172, member A
chr8_+_109455786 Show fit	0.06	ENSRNOT00000039593	Msl2 Links NCBI RGD Ensembl Show fit	male-specific lethal 2 homolog (Drosophila)
chr2_+_56052643 Show fit	0.06	ENSRNOT00000029565	Rictor Links NCBI RGD Ensembl Show fit	RPTOR independent companion of MTOR, complex 2
chr5_+_2278357 Show fit	0.06	ENSRNOT00000066590	Stau2 Links NCBI RGD Ensembl Show fit	staufen double-stranded RNA binding protein 2
chr10_-_49149479 Show fit	0.06	ENSRNOT00000004291	Zfp287 Links NCBI RGD Ensembl Show fit	zinc finger protein 287
chr1_-_124038966 Show fit	0.05	ENSRNOT00000082487	Chrna7 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic alpha 7 subunit
chrX_+_65040934 Show fit	0.05	ENSRNOT00000044006	Zc3h12b Links NCBI RGD Ensembl Show fit	zinc finger CCCH-type containing 12B
chr2_+_114386019 Show fit	0.05	ENSRNOT00000082148	AABR07009834.1 Links NCBI RGD Ensembl Show fit
chr14_+_8080565 Show fit	0.05	ENSRNOT00000092395	Mapk10 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase 10
chr5_-_160070916 Show fit	0.05	ENSRNOT00000067517 ENSRNOT00000055791	Spen Links NCBI RGD Ensembl Show fit	spen family transcriptional repressor
chr2_+_189655702 Show fit	0.05	ENSRNOT00000021502	Gatad2b Links NCBI RGD Ensembl Show fit	GATA zinc finger domain containing 2B
chr3_-_66417741 Show fit	0.05	ENSRNOT00000007662	Neurod1 Links NCBI RGD Ensembl Show fit	neuronal differentiation 1
chrX_+_68752597 Show fit	0.04	ENSRNOT00000077039	Stard8 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 8
chr14_+_23507628 Show fit	0.04	ENSRNOT00000037509	Uba6 Links NCBI RGD Ensembl Show fit	ubiquitin-like modifier activating enzyme 6
chr11_+_66316606 Show fit	0.04	ENSRNOT00000041715	Stxbp5l Links NCBI RGD Ensembl Show fit	syntaxin binding protein 5-like
chr7_-_122329443 Show fit	0.04	ENSRNOT00000032232	Mkl1 Links NCBI RGD Ensembl Show fit	megakaryoblastic leukemia (translocation) 1
chr2_-_54823917 Show fit	0.04	ENSRNOT00000039057 ENSRNOT00000079333	Card6 Links NCBI RGD Ensembl Show fit	caspase recruitment domain family, member 6
chr1_-_124039196 Show fit	0.04	ENSRNOT00000051883	Chrna7 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic alpha 7 subunit
chr5_+_64566804 Show fit	0.04	ENSRNOT00000073192	LOC103690035 Links NCBI RGD Ensembl Show fit	TGF-beta receptor type-1-like
chr13_+_89805962 Show fit	0.04	ENSRNOT00000074035	Tstd1 Links NCBI RGD Ensembl Show fit	thiosulfate sulfurtransferase like domain containing 1
chr4_-_16669368 Show fit	0.03	ENSRNOT00000007608	Pclo Links NCBI RGD Ensembl Show fit	piccolo (presynaptic cytomatrix protein)
chr3_-_152179193 Show fit	0.03	ENSRNOT00000026700	Rbm12 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 12
chr10_-_52290657 Show fit	0.03	ENSRNOT00000005293	Map2k4 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase kinase 4
chr2_+_22950018 Show fit	0.03	ENSRNOT00000071804	Homer1 Links NCBI RGD Ensembl Show fit	homer scaffolding protein 1
chr5_+_171274544 Show fit	0.03	ENSRNOT00000077307	Cep104 Links NCBI RGD Ensembl Show fit	centrosomal protein 104
chr5_+_35991068 Show fit	0.03	ENSRNOT00000061139	Pnisr Links NCBI RGD Ensembl Show fit	PNN interacting serine and arginine rich protein
chr19_+_39543242 Show fit	0.03	ENSRNOT00000018837	Wwp2 Links NCBI RGD Ensembl Show fit	WW domain containing E3 ubiquitin protein ligase 2
chr5_-_117754571 Show fit	0.03	ENSRNOT00000011405	Dock7 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 7
chr13_+_57243877 Show fit	0.03	ENSRNOT00000083693	Kcnt2 Links NCBI RGD Ensembl Show fit	potassium sodium-activated channel subfamily T member 2
chr11_-_1983513 Show fit	0.03	ENSRNOT00000000907	Htr1f Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 1F
chr2_+_27005863 Show fit	0.03	ENSRNOT00000080864	Poc5 Links NCBI RGD Ensembl Show fit	POC5 centriolar protein
chr13_-_82295123 Show fit	0.03	ENSRNOT00000090120	LOC498265 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ10706
chr15_-_108120279 Show fit	0.03	ENSRNOT00000090572	Dock9 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 9
chr6_-_78817641 Show fit	0.03	ENSRNOT00000072117	AABR07064392.1 Links NCBI RGD Ensembl Show fit
chr17_-_77527894 Show fit	0.03	ENSRNOT00000032173	Bend7 Links NCBI RGD Ensembl Show fit	BEN domain containing 7
chr3_-_100364400 Show fit	0.03	ENSRNOT00000006670	Mettl15 Links NCBI RGD Ensembl Show fit	methyltransferase like 15
chr17_+_82065937 Show fit	0.03	ENSRNOT00000051349	Arl5b Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor like GTPase 5B
chrX_+_10042893 Show fit	0.03	ENSRNOT00000084218	LOC100910506 Links NCBI RGD Ensembl Show fit	peripheral plasma membrane protein CASK-like
chr20_-_6257604 Show fit	0.02	ENSRNOT00000092489	Stk38 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 38
chr6_+_137924568 Show fit	0.02	ENSRNOT00000046456	Mta1 Links NCBI RGD Ensembl Show fit	metastasis associated 1
chr3_+_80468154 Show fit	0.02	ENSRNOT00000021837	Ckap5 Links NCBI RGD Ensembl Show fit	cytoskeleton associated protein 5
chr2_+_18937458 Show fit	0.02	ENSRNOT00000022377	Tmem167a Links NCBI RGD Ensembl Show fit	transmembrane protein 167A
chrX_+_9956370 Show fit	0.02	ENSRNOT00000082316	LOC100910506 Links NCBI RGD Ensembl Show fit	peripheral plasma membrane protein CASK-like
chr8_-_14880644 Show fit	0.02	ENSRNOT00000015977	Fat3 Links NCBI RGD Ensembl Show fit	FAT atypical cadherin 3
chr3_-_57913999 Show fit	0.02	ENSRNOT00000090426	Slc25a12 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 12
chr17_-_47653989 Show fit	0.02	ENSRNOT00000072833	LOC498759 Links NCBI RGD Ensembl Show fit	LRRGT00094
chr15_-_93748742 Show fit	0.02	ENSRNOT00000093370	Mycbp2 Links NCBI RGD Ensembl Show fit	MYC binding protein 2, E3 ubiquitin protein ligase
chr1_+_171793782 Show fit	0.01	ENSRNOT00000081351	Olfml1 Links NCBI RGD Ensembl Show fit	olfactomedin-like 1
chr14_-_45165207 Show fit	0.01	ENSRNOT00000002960	Klf3 Links NCBI RGD Ensembl Show fit	Kruppel like factor 3
chr14_+_8080275 Show fit	0.01	ENSRNOT00000065965 ENSRNOT00000092542	Mapk10 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase 10
chr2_+_206454208 Show fit	0.01	ENSRNOT00000026863	Phtf1 Links NCBI RGD Ensembl Show fit	putative homeodomain transcription factor 1
chr6_-_92398525 Show fit	0.01	ENSRNOT00000007314	Sav1 Links NCBI RGD Ensembl Show fit	salvador family WW domain containing protein 1
chr20_-_45053640 Show fit	0.01	ENSRNOT00000072256	RGD1561777 Links NCBI RGD Ensembl Show fit	similar to Na+ dependent glucose transporter 1
chr7_-_119689938 Show fit	0.01	ENSRNOT00000000200	Tmprss6 Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 6
chr5_-_144996431 Show fit	0.01	ENSRNOT00000016992	Zmym4 Links NCBI RGD Ensembl Show fit	zinc finger MYM-type containing 4
chr17_-_32015071 Show fit	0.01	ENSRNOT00000070876	LOC100911107 Links NCBI RGD Ensembl Show fit	leukocyte elastase inhibitor A-like
chr12_-_12546111 Show fit	0.01	ENSRNOT00000046381	Lmtk2 Links NCBI RGD Ensembl Show fit	lemur tyrosine kinase 2
chrM_+_11736 Show fit	0.01	ENSRNOT00000048767	Mt-nd5 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 5
chr7_+_65616177 Show fit	0.01	ENSRNOT00000006566	Gns Links NCBI RGD Ensembl Show fit	glucosamine (N-acetyl)-6-sulfatase
chr18_-_26656879 Show fit	0.01	ENSRNOT00000086729	Epb41l4a Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4A
chr2_-_183210799 Show fit	0.01	ENSRNOT00000085382	Trim2 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 2
chr4_+_22082194 Show fit	0.01	ENSRNOT00000091799	Crot Links NCBI RGD Ensembl Show fit	carnitine O-octanoyltransferase
chr17_-_14627937 Show fit	0.00	ENSRNOT00000020532	NEWGENE_1308171 Links NCBI RGD Ensembl Show fit	osteoglycin
chr6_+_100337226 Show fit	0.00	ENSRNOT00000011220	Fut8 Links NCBI RGD Ensembl Show fit	fucosyltransferase 8
chr4_-_164051812 Show fit	0.00	ENSRNOT00000085719	AABR07062183.1 Links NCBI RGD Ensembl Show fit
chr10_+_93520132 Show fit	0.00	ENSRNOT00000055137	Mrc2 Links NCBI RGD Ensembl Show fit	mannose receptor, C type 2
chrX_+_65040775 Show fit	0.00	ENSRNOT00000081354	Zc3h12b Links NCBI RGD Ensembl Show fit	zinc finger CCCH-type containing 12B

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001982	baroreceptor response to decreased systemic arterial blood pressure(GO:0001982)
0.0	0.1	GO:0070212	protein poly-ADP-ribosylation(GO:0070212) regulation of telomeric DNA binding(GO:1904742)
0.0	0.1	GO:0060926	cardiac pacemaker cell development(GO:0060926)
0.0	0.1	GO:0098964	dendritic transport of ribonucleoprotein complex(GO:0098961) dendritic transport of messenger ribonucleoprotein complex(GO:0098963) anterograde dendritic transport of messenger ribonucleoprotein complex(GO:0098964)
0.0	0.1	GO:0051919	positive regulation of fibrinolysis(GO:0051919)
0.0	0.2	GO:0031643	positive regulation of myelination(GO:0031643)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002193	MAML1-RBP-Jkappa- ICN1 complex(GO:0002193)
0.0	0.1	GO:0072487	MSL complex(GO:0072487)
0.0	0.0	GO:0044317	rod spherule(GO:0044317)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070699	type II activin receptor binding(GO:0070699)
0.0	0.0	GO:0004839	ubiquitin activating enzyme activity(GO:0004839)