GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene Symbol | Gene ID | Gene Info |
---|---|---|
Sox21
|
ENSRNOG00000052579 | Sox21 |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_+_135513650 | 0.19 |
ENSRNOT00000010676
|
Rcor1
|
REST corepressor 1 |
chr13_+_43850751 | 0.17 |
ENSRNOT00000004995
|
Mgat5
|
mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase |
chr2_+_155555840 | 0.15 |
ENSRNOT00000080951
|
AABR07010944.1
|
|
chrX_+_54062935 | 0.15 |
ENSRNOT00000004854
|
Tab3
|
TGF-beta activated kinase 1/MAP3K7 binding protein 3 |
chr5_+_150787043 | 0.15 |
ENSRNOT00000082945
|
Eya3
|
EYA transcriptional coactivator and phosphatase 3 |
chr6_+_12179227 | 0.13 |
ENSRNOT00000061693
|
Foxn2
|
forkhead box N2 |
chr4_-_155563249 | 0.12 |
ENSRNOT00000011298
|
Slc2a3
|
solute carrier family 2 member 3 |
chr5_-_12526962 | 0.11 |
ENSRNOT00000092104
|
St18
|
suppression of tumorigenicity 18 |
chr4_-_144869919 | 0.11 |
ENSRNOT00000009066
|
Srgap3
|
SLIT-ROBO Rho GTPase activating protein 3 |
chr4_-_168517177 | 0.11 |
ENSRNOT00000009151
|
Dusp16
|
dual specificity phosphatase 16 |
chr1_+_240355149 | 0.11 |
ENSRNOT00000018521
|
Trpm3
|
transient receptor potential cation channel, subfamily M, member 3 |
chr8_-_123829749 | 0.11 |
ENSRNOT00000090467
|
AABR07071598.1
|
|
chr3_-_138683318 | 0.10 |
ENSRNOT00000029701
|
Dzank1
|
double zinc ribbon and ankyrin repeat domains 1 |
chr10_-_35187416 | 0.10 |
ENSRNOT00000084509
|
Cnot6
|
CCR4-NOT transcription complex, subunit 6 |
chr9_-_66019065 | 0.09 |
ENSRNOT00000088729
|
Als2
|
ALS2, alsin Rho guanine nucleotide exchange factor |
chr14_+_104250617 | 0.09 |
ENSRNOT00000079874
|
Spred2
|
sprouty-related, EVH1 domain containing 2 |
chr1_-_67134827 | 0.09 |
ENSRNOT00000045214
|
Vom1r45
|
vomeronasal 1 receptor 45 |
chr5_+_121952977 | 0.09 |
ENSRNOT00000008278
|
Pde4b
|
phosphodiesterase 4B |
chr3_-_141411170 | 0.08 |
ENSRNOT00000017364
|
Nkx2-2
|
NK2 homeobox 2 |
chr16_+_50152008 | 0.08 |
ENSRNOT00000019237
|
Klkb1
|
kallikrein B1 |
chr7_+_48867664 | 0.08 |
ENSRNOT00000005862
|
Ppfia2
|
PTPRF interacting protein alpha 2 |
chr19_-_37796089 | 0.08 |
ENSRNOT00000024891
|
Ranbp10
|
RAN binding protein 10 |
chr3_+_171832500 | 0.08 |
ENSRNOT00000007554
|
Vapb
|
VAMP associated protein B and C |
chr10_-_58771908 | 0.07 |
ENSRNOT00000018808
|
RGD1304728
|
similar to 4933427D14Rik protein |
chr18_+_30895831 | 0.07 |
ENSRNOT00000026985
|
Pcdhga10
|
protocadherin gamma subfamily A, 10 |
chr2_+_251200686 | 0.07 |
ENSRNOT00000019210
|
Col24a1
|
collagen type XXIV alpha 1 chain |
chrX_+_128409472 | 0.07 |
ENSRNOT00000078482
|
Xiap
|
X-linked inhibitor of apoptosis |
chr11_+_65743892 | 0.07 |
ENSRNOT00000085226
|
AC106292.2
|
|
chr1_-_140262452 | 0.07 |
ENSRNOT00000046849
ENSRNOT00000045165 ENSRNOT00000025536 ENSRNOT00000041839 |
Ntrk3
|
neurotrophic receptor tyrosine kinase 3 |
chr8_+_82037977 | 0.07 |
ENSRNOT00000082288
|
Myo5a
|
myosin VA |
chr14_-_86333424 | 0.07 |
ENSRNOT00000083191
|
Nudcd3
|
NudC domain containing 3 |
chr1_+_87563975 | 0.06 |
ENSRNOT00000088772
|
Zfp30
|
zinc finger protein 30 |
chr17_-_86657473 | 0.06 |
ENSRNOT00000078827
|
AABR07028795.1
|
|
chr11_-_11213821 | 0.06 |
ENSRNOT00000093706
|
Robo2
|
roundabout guidance receptor 2 |
chr4_+_153217782 | 0.06 |
ENSRNOT00000015499
|
Cecr2
|
CECR2, histone acetyl-lysine reader |
chr5_+_167141875 | 0.06 |
ENSRNOT00000089314
|
Slc2a5
|
solute carrier family 2 member 5 |
chr3_-_61488696 | 0.06 |
ENSRNOT00000083045
|
Lnpk
|
lunapark, ER junction formation factor |
chr5_+_131380297 | 0.06 |
ENSRNOT00000010548
|
Agbl4
|
ATP/GTP binding protein-like 4 |
chr4_-_119131202 | 0.05 |
ENSRNOT00000011675
|
Antxr1
|
anthrax toxin receptor 1 |
chr16_-_9658484 | 0.05 |
ENSRNOT00000065216
|
Mapk8
|
mitogen-activated protein kinase 8 |
chr4_-_155275161 | 0.05 |
ENSRNOT00000032690
|
Rimklb
|
ribosomal modification protein rimK-like family member B |
chr2_-_186480278 | 0.05 |
ENSRNOT00000031743
|
Kirrel
|
kin of IRRE like (Drosophila) |
chr10_-_1461216 | 0.05 |
ENSRNOT00000083125
ENSRNOT00000084447 ENSRNOT00000078421 |
Parn
|
poly(A)-specific ribonuclease |
chr1_-_219544328 | 0.05 |
ENSRNOT00000025847
|
Grk2
|
G protein-coupled receptor kinase 2 |
chr2_-_27343998 | 0.05 |
ENSRNOT00000091418
|
Polk
|
DNA polymerase kappa |
chr1_+_171797516 | 0.05 |
ENSRNOT00000088110
|
Ppfibp2
|
PPFIA binding protein 2 |
chr17_+_36691875 | 0.05 |
ENSRNOT00000074314
|
LOC688583
|
similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) |
chr4_-_49422824 | 0.05 |
ENSRNOT00000077889
|
Fam3c
|
family with sequence similarity 3, member C |
chr12_+_38375416 | 0.05 |
ENSRNOT00000078530
|
Clip1
|
CAP-GLY domain containing linker protein 1 |
chr12_-_52658275 | 0.05 |
ENSRNOT00000041981
|
Zfp605
|
zinc finger protein 605 |
chr3_+_94585873 | 0.05 |
ENSRNOT00000076762
|
Cstf3
|
cleavage stimulation factor subunit 3 |
chr11_-_72814253 | 0.05 |
ENSRNOT00000029842
|
LOC100911374
|
UBX domain-containing protein 7-like |
chr5_-_152589719 | 0.04 |
ENSRNOT00000022522
|
Extl1
|
exostosin-like glycosyltransferase 1 |
chr5_+_156613741 | 0.04 |
ENSRNOT00000076031
|
Sh2d5
|
SH2 domain containing 5 |
chr3_-_111587151 | 0.04 |
ENSRNOT00000007299
|
Rpap1
|
RNA polymerase II associated protein 1 |
chr5_-_39650894 | 0.04 |
ENSRNOT00000010421
ENSRNOT00000089522 |
Ufl1
|
Ufm1-specific ligase 1 |
chr3_+_17889972 | 0.04 |
ENSRNOT00000073021
|
AABR07051611.1
|
|
chr6_+_99883959 | 0.04 |
ENSRNOT00000010588
|
Fntb
|
farnesyltransferase, CAAX box, beta |
chr10_-_52290657 | 0.04 |
ENSRNOT00000005293
|
Map2k4
|
mitogen activated protein kinase kinase 4 |
chr11_+_42259761 | 0.04 |
ENSRNOT00000047310
|
Epha6
|
Eph receptor A6 |
chr7_-_104541392 | 0.04 |
ENSRNOT00000078116
|
Fam49b
|
family with sequence similarity 49, member B |
chr4_-_50693869 | 0.04 |
ENSRNOT00000064228
|
Rnf148
|
ring finger protein 148 |
chr11_-_88374679 | 0.04 |
ENSRNOT00000002524
|
Top3b
|
topoisomerase (DNA) III beta |
chr1_+_204959174 | 0.04 |
ENSRNOT00000023257
|
Zranb1
|
zinc finger RANBP2-type containing 1 |
chr5_-_120083904 | 0.04 |
ENSRNOT00000064542
|
Jak1
|
Janus kinase 1 |
chr20_+_4329811 | 0.04 |
ENSRNOT00000000513
|
Notch4
|
notch 4 |
chr10_+_65552897 | 0.04 |
ENSRNOT00000056217
|
Spag5
|
sperm associated antigen 5 |
chr13_-_83457888 | 0.04 |
ENSRNOT00000076289
ENSRNOT00000004065 |
Sft2d2
|
SFT2 domain containing 2 |
chr17_-_2278613 | 0.03 |
ENSRNOT00000046525
|
Cntnap3b
|
contactin associated protein-like 3B |
chr1_-_53152866 | 0.03 |
ENSRNOT00000085501
|
Fgfr1op
|
Fgfr1 oncogene partner |
chr3_-_48831417 | 0.03 |
ENSRNOT00000009920
ENSRNOT00000085246 |
Kcnh7
|
potassium voltage-gated channel subfamily H member 7 |
chr13_-_34251942 | 0.03 |
ENSRNOT00000044095
|
Tsn
|
translin |
chr3_-_132282879 | 0.03 |
ENSRNOT00000042040
|
LOC100361388
|
high-mobility group nucleosomal binding domain 2-like |
chr10_+_3170742 | 0.03 |
ENSRNOT00000093528
ENSRNOT00000004459 |
Rrn3
|
RRN3 homolog, RNA polymerase I transcription factor |
chr2_-_38110567 | 0.03 |
ENSRNOT00000072212
|
Ipo11
|
importin 11 |
chr4_+_91373942 | 0.03 |
ENSRNOT00000043827
|
Ccser1
|
coiled-coil serine-rich protein 1 |
chr7_+_73273985 | 0.03 |
ENSRNOT00000077730
|
Pop1
|
POP1 homolog, ribonuclease P/MRP subunit |
chr7_+_28066635 | 0.03 |
ENSRNOT00000005844
|
Pah
|
phenylalanine hydroxylase |
chr9_+_118842787 | 0.03 |
ENSRNOT00000090512
|
Dlgap1
|
DLG associated protein 1 |
chrX_+_9956370 | 0.02 |
ENSRNOT00000082316
|
LOC100910506
|
peripheral plasma membrane protein CASK-like |
chr6_-_125723732 | 0.02 |
ENSRNOT00000084815
|
Fbln5
|
fibulin 5 |
chr4_-_55011415 | 0.02 |
ENSRNOT00000056996
|
Grm8
|
glutamate metabotropic receptor 8 |
chr2_-_3124543 | 0.02 |
ENSRNOT00000036547
|
Fam81b
|
family with sequence similarity 81, member B |
chr10_-_87286387 | 0.02 |
ENSRNOT00000044206
|
Krt28
|
keratin 28 |
chr1_-_87735308 | 0.02 |
ENSRNOT00000089385
|
AABR07002870.2
|
|
chr9_+_10941613 | 0.02 |
ENSRNOT00000070794
|
Sema6b
|
semaphorin 6B |
chr1_+_253221812 | 0.02 |
ENSRNOT00000085880
ENSRNOT00000054753 |
Kif20b
|
kinesin family member 20B |
chr13_+_110372164 | 0.02 |
ENSRNOT00000049634
|
RGD1560186
|
similar to ribosomal protein L37 |
chr3_+_158997834 | 0.02 |
ENSRNOT00000000211
|
LOC108348048
|
von Willebrand factor A domain-containing protein 5A |
chr1_-_102845083 | 0.02 |
ENSRNOT00000082289
|
Saa4
|
serum amyloid A4 |
chr17_+_27492220 | 0.02 |
ENSRNOT00000084090
|
Ssr1
|
signal sequence receptor subunit 1 |
chr18_-_28017925 | 0.02 |
ENSRNOT00000075420
|
Lrrtm2
|
leucine rich repeat transmembrane neuronal 2 |
chr19_-_11669578 | 0.02 |
ENSRNOT00000026373
|
Gnao1
|
G protein subunit alpha o1 |
chr2_+_195684210 | 0.02 |
ENSRNOT00000028316
|
mrpl9
|
mitochondrial ribosomal protein L9 |
chr11_+_47061354 | 0.02 |
ENSRNOT00000039997
|
Pcnp
|
PEST proteolytic signal containing nuclear protein |
chr3_+_43255567 | 0.02 |
ENSRNOT00000044419
|
Gpd2
|
glycerol-3-phosphate dehydrogenase 2 |
chr13_+_57243877 | 0.02 |
ENSRNOT00000083693
|
Kcnt2
|
potassium sodium-activated channel subfamily T member 2 |
chr11_+_7265828 | 0.02 |
ENSRNOT00000084765
|
Gbe1
|
1,4-alpha-glucan branching enzyme 1 |
chr8_+_42443442 | 0.02 |
ENSRNOT00000015986
|
Vwa5a
|
von Willebrand factor A domain containing 5A |
chrM_+_9870 | 0.01 |
ENSRNOT00000044582
|
Mt-nd4l
|
mitochondrially encoded NADH 4L dehydrogenase |
chr14_-_66771750 | 0.01 |
ENSRNOT00000005587
|
Pacrgl
|
PARK2 co-regulated-like |
chrX_-_40086870 | 0.01 |
ENSRNOT00000010027
|
Smpx
|
small muscle protein, X-linked |
chr2_+_164601586 | 0.01 |
ENSRNOT00000042079
ENSRNOT00000017608 |
Gfm1
|
G elongation factor, mitochondrial 1 |
chr13_-_52413681 | 0.01 |
ENSRNOT00000037100
ENSRNOT00000011801 |
Nav1
|
neuron navigator 1 |
chr10_+_10457320 | 0.01 |
ENSRNOT00000003832
|
Rbm25l1
|
RNA binding motif protein 25-like 1 |
chr17_-_76281660 | 0.01 |
ENSRNOT00000058070
|
Upf2
|
UPF2 regulator of nonsense transcripts homolog (yeast) |
chr3_+_16846412 | 0.01 |
ENSRNOT00000074266
|
AABR07051551.1
|
|
chr13_-_34251650 | 0.01 |
ENSRNOT00000068524
|
Tsn
|
translin |
chrX_+_84064427 | 0.01 |
ENSRNOT00000046364
|
Zfp711
|
zinc finger protein 711 |
chr5_+_6373583 | 0.01 |
ENSRNOT00000084749
|
AABR07046778.1
|
|
chr7_+_37101391 | 0.01 |
ENSRNOT00000029764
|
Eea1
|
early endosome antigen 1 |
chr9_+_42945358 | 0.01 |
ENSRNOT00000059806
|
Fer1l5
|
fer-1-like family member 5 |
chr4_+_146598413 | 0.01 |
ENSRNOT00000067532
|
Atg7
|
autophagy related 7 |
chr5_+_157222636 | 0.01 |
ENSRNOT00000022579
|
Pla2g2d
|
phospholipase A2, group IID |
chr18_-_1828606 | 0.01 |
ENSRNOT00000033312
|
Esco1
|
establishment of sister chromatid cohesion N-acetyltransferase 1 |
chr2_+_100677411 | 0.01 |
ENSRNOT00000067556
|
Ythdf3
|
YTH N(6)-methyladenosine RNA binding protein 3 |
chrX_+_110016995 | 0.01 |
ENSRNOT00000093542
|
Nrk
|
Nik related kinase |
chr3_-_48604097 | 0.01 |
ENSRNOT00000009620
|
Ifih1
|
interferon induced with helicase C domain 1 |
chr2_+_196462554 | 0.00 |
ENSRNOT00000056380
|
Fam63a
|
family with sequence similarity 63, member A |
chrX_-_10031167 | 0.00 |
ENSRNOT00000060988
|
Gpr34
|
G protein-coupled receptor 34 |
chr6_-_14523961 | 0.00 |
ENSRNOT00000071402
|
Nrxn1
|
neurexin 1 |
chr11_-_54344615 | 0.00 |
ENSRNOT00000090307
|
Myh15
|
myosin, heavy chain 15 |
chr1_+_281863918 | 0.00 |
ENSRNOT00000030108
|
Snu13
|
SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) |
chr16_-_14382641 | 0.00 |
ENSRNOT00000018723
|
Ghitm
|
growth hormone inducible transmembrane protein |
chr6_-_138249382 | 0.00 |
ENSRNOT00000085678
ENSRNOT00000006912 |
Ighm
|
immunoglobulin heavy constant mu |
chr10_-_63240332 | 0.00 |
ENSRNOT00000005125
|
Blmh
|
bleomycin hydrolase |
chr1_+_242959488 | 0.00 |
ENSRNOT00000015668
|
Dock8
|
dedicator of cytokinesis 8 |
chr10_+_29033989 | 0.00 |
ENSRNOT00000088322
|
Slu7
|
SLU7 homolog, splicing factor |
chr6_+_29061618 | 0.00 |
ENSRNOT00000092223
|
Atad2b
|
ATPase family, AAA domain containing 2B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.1 | GO:0021530 | spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530) |
0.0 | 0.1 | GO:2000327 | positive regulation of ligand-dependent nuclear receptor transcription coactivator activity(GO:2000327) |
0.0 | 0.2 | GO:0045654 | positive regulation of megakaryocyte differentiation(GO:0045654) |
0.0 | 0.1 | GO:0015755 | fructose transport(GO:0015755) |
0.0 | 0.1 | GO:1902595 | regulation of DNA replication origin binding(GO:1902595) |
0.0 | 0.1 | GO:0048691 | positive regulation of sprouting of injured axon(GO:0048687) positive regulation of axon extension involved in regeneration(GO:0048691) |
0.0 | 0.1 | GO:0051643 | endoplasmic reticulum localization(GO:0051643) |
0.0 | 0.1 | GO:0016576 | histone dephosphorylation(GO:0016576) |
0.0 | 0.1 | GO:0046725 | negative regulation by virus of viral protein levels in host cell(GO:0046725) |
0.0 | 0.1 | GO:1901898 | negative regulation of relaxation of cardiac muscle(GO:1901898) |
0.0 | 0.0 | GO:0018343 | protein farnesylation(GO:0018343) |
0.0 | 0.0 | GO:2000568 | memory T cell activation(GO:0035709) regulation of memory T cell activation(GO:2000567) positive regulation of memory T cell activation(GO:2000568) |
0.0 | 0.1 | GO:0051919 | positive regulation of fibrinolysis(GO:0051919) |
0.0 | 0.1 | GO:0051036 | regulation of endosome size(GO:0051036) |
0.0 | 0.0 | GO:0071947 | protein deubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0071947) protein K33-linked deubiquitination(GO:1990168) |
0.0 | 0.1 | GO:0070837 | dehydroascorbic acid transport(GO:0070837) |
0.0 | 0.1 | GO:0050925 | negative regulation of negative chemotaxis(GO:0050925) |
0.0 | 0.1 | GO:0097039 | protein linear polyubiquitination(GO:0097039) |
0.0 | 0.0 | GO:0072709 | cellular response to sorbitol(GO:0072709) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.1 | GO:0042642 | actomyosin, myosin complex part(GO:0042642) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.2 | GO:0030144 | alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity(GO:0030144) |
0.0 | 0.1 | GO:0033222 | xylose binding(GO:0033222) |
0.0 | 0.1 | GO:0005087 | Ran guanyl-nucleotide exchange factor activity(GO:0005087) |
0.0 | 0.1 | GO:0033149 | FFAT motif binding(GO:0033149) |
0.0 | 0.1 | GO:0072590 | N-acetyl-L-aspartate-L-glutamate ligase activity(GO:0072590) |
0.0 | 0.1 | GO:0005030 | neurotrophin receptor activity(GO:0005030) |
0.0 | 0.0 | GO:0023025 | MHC class Ib protein complex binding(GO:0023025) MHC class Ib protein binding, via antigen binding groove(GO:0023030) |
0.0 | 0.1 | GO:0005173 | stem cell factor receptor binding(GO:0005173) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.1 | REACTOME IRAK2 MEDIATED ACTIVATION OF TAK1 COMPLEX UPON TLR7 8 OR 9 STIMULATION | Genes involved in IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation |
0.0 | 0.2 | REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS | Genes involved in Facilitative Na+-independent glucose transporters |