GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Tbx1 Links NCBI RGD Ensembl	ENSRNOG00000001892	T-box 1
Eomes Links NCBI RGD Ensembl	ENSRNOG00000042140	eomesodermin

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Eomes	rn6_v1_chr8_+_127144903_127144903	0.89	4.6e-02	Click!
Tbx1	rn6_v1_chr11_+_86552022_86552022	0.76	1.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_227047290 Show fit	0.12	ENSRNOT00000037226	Ms4a15 Links NCBI RGD Ensembl Show fit	membrane spanning 4-domains A15
chr6_+_28323647 Show fit	0.10	ENSRNOT00000089093	Dnmt3a Links NCBI RGD Ensembl Show fit	DNA methyltransferase 3 alpha
chr1_-_124803363 Show fit	0.10	ENSRNOT00000066380	Klf13 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 13
chr9_-_63637677 Show fit	0.09	ENSRNOT00000049259	Satb2 Links NCBI RGD Ensembl Show fit	SATB homeobox 2
chr18_+_53609214 Show fit	0.09	ENSRNOT00000077443	Slc27a6 Links NCBI RGD Ensembl Show fit	solute carrier family 27 member 6
chr12_+_52359310 Show fit	0.08	ENSRNOT00000071857 ENSRNOT00000065893	Fbrsl1 Links NCBI RGD Ensembl Show fit	fibrosin-like 1
chr16_+_46731403 Show fit	0.08	ENSRNOT00000017624	Tenm3 Links NCBI RGD Ensembl Show fit	teneurin transmembrane protein 3
chr4_-_180234804 Show fit	0.08	ENSRNOT00000070957	Bhlhe41 Links NCBI RGD Ensembl Show fit	basic helix-loop-helix family, member e41
chr10_-_88754829 Show fit	0.07	ENSRNOT00000026354	Stat5b Links NCBI RGD Ensembl Show fit	signal transducer and activator of transcription 5B
chr3_+_161433410 Show fit	0.07	ENSRNOT00000024657	Slc12a5 Links NCBI RGD Ensembl Show fit	solute carrier family 12 member 5
chr9_-_15700235 Show fit	0.07	ENSRNOT00000088713 ENSRNOT00000035907	Trerf1 Links NCBI RGD Ensembl Show fit	transcriptional regulating factor 1
chr10_-_88645364 Show fit	0.07	ENSRNOT00000030344	Rab5c Links NCBI RGD Ensembl Show fit	RAB5C, member RAS oncogene family
chr19_-_25288335 Show fit	0.07	ENSRNOT00000050214	Nanos3 Links NCBI RGD Ensembl Show fit	nanos C2HC-type zinc finger 3
chr5_+_136683592 Show fit	0.06	ENSRNOT00000085527	Slc6a9 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 9
chr3_+_131351587 Show fit	0.06	ENSRNOT00000010835	Btbd3 Links NCBI RGD Ensembl Show fit	BTB domain containing 3
chr2_+_207262934 Show fit	0.06	ENSRNOT00000016833	Ppm1j Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1J
chr8_-_45215974 Show fit	0.06	ENSRNOT00000010792	Crtam Links NCBI RGD Ensembl Show fit	cytotoxic and regulatory T cell molecule
chr5_+_143500441 Show fit	0.05	ENSRNOT00000045513	Grik3 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor kainate type subunit 3
chr20_+_6351458 Show fit	0.05	ENSRNOT00000091731	Cdkn1a Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 1A
chr6_-_44363915 Show fit	0.05	ENSRNOT00000085925	Id2 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 2, HLH protein
chr17_-_14091766 Show fit	0.04	ENSRNOT00000075373	AABR07027088.1 Links NCBI RGD Ensembl Show fit
chr1_-_20155960 Show fit	0.04	ENSRNOT00000061389	Samd3 Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 3
chr1_+_187149453 Show fit	0.04	ENSRNOT00000082738	Xylt1 Links NCBI RGD Ensembl Show fit	xylosyltransferase 1
chr8_-_78233430 Show fit	0.04	ENSRNOT00000083220	Cgnl1 Links NCBI RGD Ensembl Show fit	cingulin-like 1
chr2_-_177924970 Show fit	0.04	ENSRNOT00000029340	Rapgef2 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 2
chr4_+_146455332 Show fit	0.04	ENSRNOT00000009775	Hrh1 Links NCBI RGD Ensembl Show fit	histamine receptor H 1
chr1_+_238222521 Show fit	0.04	ENSRNOT00000024000	Aldh1a1 Links NCBI RGD Ensembl Show fit	aldehyde dehydrogenase 1 family, member A1
chr15_+_8739589 Show fit	0.04	ENSRNOT00000071751	Nr1d2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 1, group D, member 2
chr5_+_63781801 Show fit	0.03	ENSRNOT00000008302	Nr4a3 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 4, group A, member 3
chr5_-_12563429 Show fit	0.03	ENSRNOT00000059625	St18 Links NCBI RGD Ensembl Show fit	suppression of tumorigenicity 18
chr1_+_79982639 Show fit	0.03	ENSRNOT00000071916	Dmwd Links NCBI RGD Ensembl Show fit	dystrophia myotonica, WD repeat containing
chr18_-_28871849 Show fit	0.03	ENSRNOT00000025902	Nrg2 Links NCBI RGD Ensembl Show fit	neuregulin 2
chr7_+_41475163 Show fit	0.03	ENSRNOT00000037844	Dusp6 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 6
chr3_+_160231914 Show fit	0.03	ENSRNOT00000014411	Kcnk15 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 15
chr2_+_263212051 Show fit	0.03	ENSRNOT00000089396	Negr1 Links NCBI RGD Ensembl Show fit	neuronal growth regulator 1
chr17_-_80320681 Show fit	0.03	ENSRNOT00000023637	C1ql3 Links NCBI RGD Ensembl Show fit	complement C1q like 3
chr5_-_150704117 Show fit	0.03	ENSRNOT00000067455	Sesn2 Links NCBI RGD Ensembl Show fit	sestrin 2
chr6_+_101532518 Show fit	0.03	ENSRNOT00000075054	Gphn Links NCBI RGD Ensembl Show fit	gephyrin
chr8_+_32188617 Show fit	0.03	ENSRNOT00000081145	Zbtb44 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 44
chr5_+_58393603 Show fit	0.02	ENSRNOT00000080082	Dnajb5 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member B5
chr11_+_47061354 Show fit	0.02	ENSRNOT00000039997	Pcnp Links NCBI RGD Ensembl Show fit	PEST proteolytic signal containing nuclear protein
chr14_+_12218553 Show fit	0.02	ENSRNOT00000003237	Prkg2 Links NCBI RGD Ensembl Show fit	protein kinase, cGMP-dependent, type II
chr2_-_62634785 Show fit	0.02	ENSRNOT00000017937	Pdzd2 Links NCBI RGD Ensembl Show fit	PDZ domain containing 2
chr7_-_27240528 Show fit	0.02	ENSRNOT00000029435 ENSRNOT00000079731	Hsp90b1 Links NCBI RGD Ensembl Show fit	heat shock protein 90 beta family member 1
chr20_+_2501252 Show fit	0.02	ENSRNOT00000079307 ENSRNOT00000084559	Trim39 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 39
chr9_+_3896337 Show fit	0.02	ENSRNOT00000079166	LOC103693189 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase type IVA 1
chr11_-_4397361 Show fit	0.02	ENSRNOT00000046370	Cadm2 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 2
chr11_+_61662270 Show fit	0.02	ENSRNOT00000079521	Zdhhc23 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 23
chr1_-_264975132 Show fit	0.02	ENSRNOT00000021748	Lbx1 Links NCBI RGD Ensembl Show fit	ladybird homeobox 1
chr4_-_100783016 Show fit	0.02	ENSRNOT00000020671	Kcmf1 Links NCBI RGD Ensembl Show fit	potassium channel modulatory factor 1
chrX_+_70563570 Show fit	0.02	ENSRNOT00000003772	Gdpd2 Links NCBI RGD Ensembl Show fit	glycerophosphodiester phosphodiesterase domain containing 2
chr5_-_79874671 Show fit	0.02	ENSRNOT00000084563	Tnc Links NCBI RGD Ensembl Show fit	tenascin C
chr18_+_46148849 Show fit	0.02	ENSRNOT00000026724	Prr16 Links NCBI RGD Ensembl Show fit	proline rich 16
chr11_+_80255790 Show fit	0.02	ENSRNOT00000002522	Bcl6 Links NCBI RGD Ensembl Show fit	B-cell CLL/lymphoma 6
chr1_-_72468738 Show fit	0.02	ENSRNOT00000029136	Zfp628 Links NCBI RGD Ensembl Show fit	zinc finger protein 628
chr2_+_74360622 Show fit	0.02	ENSRNOT00000014013	Cdh18 Links NCBI RGD Ensembl Show fit	cadherin 18
chrM_+_7758 Show fit	0.02	ENSRNOT00000046201	Mt-atp8 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 8
chr8_+_117068582 Show fit	0.01	ENSRNOT00000073559	Amt Links NCBI RGD Ensembl Show fit	aminomethyltransferase
chr8_-_6034142 Show fit	0.01	ENSRNOT00000014560	Birc2 Links NCBI RGD Ensembl Show fit	baculoviral IAP repeat-containing 2
chr2_-_104133985 Show fit	0.01	ENSRNOT00000088167 ENSRNOT00000067725	Pde7a Links NCBI RGD Ensembl Show fit	phosphodiesterase 7A
chr2_+_140836006 Show fit	0.01	ENSRNOT00000074141	Dusp14l1 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 14-like 1
chr3_-_43119159 Show fit	0.01	ENSRNOT00000041394	Nr4a2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 4, group A, member 2
chr19_-_37907714 Show fit	0.01	ENSRNOT00000026361	Ctrl Links NCBI RGD Ensembl Show fit	chymotrypsin-like
chr6_-_124429701 Show fit	0.01	ENSRNOT00000037902 ENSRNOT00000080950	Ttc7b Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 7B
chr15_-_33250546 Show fit	0.01	ENSRNOT00000017857	RGD1565222 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931414P19
chr3_+_5624506 Show fit	0.01	ENSRNOT00000036995	Adamtsl2 Links NCBI RGD Ensembl Show fit	ADAMTS-like 2
chr18_+_72571327 Show fit	0.01	ENSRNOT00000089468	Smad2 Links NCBI RGD Ensembl Show fit	SMAD family member 2
chr20_+_2058197 Show fit	0.01	ENSRNOT00000077774 ENSRNOT00000040634	RT1-M6-1 Links NCBI RGD Ensembl Show fit	RT1 class I, locus M6, gene 1
chr13_-_25262469 Show fit	0.01	ENSRNOT00000019921	Rnf152 Links NCBI RGD Ensembl Show fit	ring finger protein 152
chr4_+_58053041 Show fit	0.01	ENSRNOT00000072698	Mest Links NCBI RGD Ensembl Show fit	mesoderm specific transcript
chr1_+_224824799 Show fit	0.01	ENSRNOT00000024757	Slc22a6 Links NCBI RGD Ensembl Show fit	solute carrier family 22 member 6
chr1_-_226353611 Show fit	0.01	ENSRNOT00000037624	Dagla Links NCBI RGD Ensembl Show fit	diacylglycerol lipase, alpha
chr11_+_43143882 Show fit	0.01	ENSRNOT00000041445	Olr1528 Links NCBI RGD Ensembl Show fit	olfactory receptor 1528
chr10_+_85608544 Show fit	0.01	ENSRNOT00000092122	Mllt6 Links NCBI RGD Ensembl Show fit	MLLT6, PHD finger domain containing
chr14_+_42714315 Show fit	0.01	ENSRNOT00000084095 ENSRNOT00000091449	Phox2b Links NCBI RGD Ensembl Show fit	paired-like homeobox 2b
chr13_-_90467235 Show fit	0.01	ENSRNOT00000081534 ENSRNOT00000008150	Ncstn Links NCBI RGD Ensembl Show fit	nicastrin
chr5_+_156587093 Show fit	0.01	ENSRNOT00000019696	Hp1bp3 Links NCBI RGD Ensembl Show fit	heterochromatin protein 1, binding protein 3
chr8_+_36410683 Show fit	0.00	ENSRNOT00000015177	Srpra Links NCBI RGD Ensembl Show fit	SRP receptor alpha subunit
chr4_+_71675383 Show fit	0.00	ENSRNOT00000051265	Clcn1 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 1
chr16_+_70068378 Show fit	0.00	ENSRNOT00000073254	RGD1308750 Links NCBI RGD Ensembl Show fit	similar to DNA segment, Chr 19, Brigham & Womens Genetics 1357 expressed
chr19_+_39063998 Show fit	0.00	ENSRNOT00000081116	Has3 Links NCBI RGD Ensembl Show fit	hyaluronan synthase 3
chr13_-_79801112 Show fit	0.00	ENSRNOT00000087323 ENSRNOT00000036483	Suco Links NCBI RGD Ensembl Show fit	SUN domain containing ossification factor
chr18_-_40134504 Show fit	0.00	ENSRNOT00000022294	Trim36 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 36
chr10_-_83104173 Show fit	0.00	ENSRNOT00000031252	Kat7 Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 7
chr1_-_214423881 Show fit	0.00	ENSRNOT00000025290	Pidd1 Links NCBI RGD Ensembl Show fit	p53-induced death domain protein 1
chr8_+_28352772 Show fit	0.00	ENSRNOT00000012391	Igsf9b Links NCBI RGD Ensembl Show fit	immunoglobulin superfamily, member 9B
chrX_+_16946207 Show fit	0.00	ENSRNOT00000003981	RGD1563606 Links NCBI RGD Ensembl Show fit	similar to cysteine-rich protein 2
chr4_-_82133605 Show fit	0.00	ENSRNOT00000008023	NEWGENE_2813 Links NCBI RGD Ensembl Show fit	homeobox A2
chr8_-_36410612 Show fit	0.00	ENSRNOT00000091308	Foxred1 Links NCBI RGD Ensembl Show fit	FAD-dependent oxidoreductase domain containing 1
chr18_-_29611212 Show fit	0.00	ENSRNOT00000022685	Dnd1 Links NCBI RGD Ensembl Show fit	DND microRNA-mediated repression inhibitor 1
chr10_-_56511583 Show fit	0.00	ENSRNOT00000021402	LOC497940 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2810408A11
chr2_+_198755262 Show fit	0.00	ENSRNOT00000028807	Rbm8a Links NCBI RGD Ensembl Show fit	RNA binding motif protein 8A

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0046544	development of secondary male sexual characteristics(GO:0046544)
0.0	0.1	GO:0090116	hypermethylation of CpG island(GO:0044027) C-5 methylation of cytosine(GO:0090116)
0.0	0.0	GO:0001966	thigmotaxis(GO:0001966)
0.0	0.0	GO:0007199	G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger(GO:0007199)
0.0	0.1	GO:0032763	regulation of mast cell cytokine production(GO:0032763)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0070557	PCNA-p21 complex(GO:0070557)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0003886	DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0	0.0	GO:0019912	cyclin-dependent protein kinase activating kinase activity(GO:0019912)
0.0	0.0	GO:0030158	protein xylosyltransferase activity(GO:0030158)
0.0	0.0	GO:0018479	benzaldehyde dehydrogenase (NAD+) activity(GO:0018479)
0.0	0.1	GO:0043426	MRF binding(GO:0043426)
0.0	0.0	GO:0004969	histamine receptor activity(GO:0004969)