GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Tfcp2l1 Links NCBI RGD Ensembl	ENSRNOG00000002414	transcription factor CP2-like 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Tfcp2l1	rn6_v1_chr13_+_34610684_34610689	-0.42	4.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_-_195908037 Show fit	0.12	ENSRNOT00000079776	Tuft1 Links NCBI RGD Ensembl Show fit	tuftelin 1
chr5_-_166726794 Show fit	0.10	ENSRNOT00000022799	Slc25a33 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 33
chr5_-_153924896 Show fit	0.10	ENSRNOT00000065247	Grhl3 Links NCBI RGD Ensembl Show fit	grainyhead-like transcription factor 3
chr6_+_86131242 Show fit	0.10	ENSRNOT00000039337	Fau Links NCBI RGD Ensembl Show fit	FAU, ubiquitin like and ribosomal protein S30 fusion
chr13_+_104284660 Show fit	0.10	ENSRNOT00000005400	Dusp10 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 10
chr20_+_5049496 Show fit	0.10	ENSRNOT00000088251 ENSRNOT00000001118	Ddah2 Links NCBI RGD Ensembl Show fit	dimethylarginine dimethylaminohydrolase 2
chr1_-_141481315 Show fit	0.09	ENSRNOT00000020229	Pex11a Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 11 alpha
chr11_-_36479868 Show fit	0.08	ENSRNOT00000075762	LOC100911295 Links NCBI RGD Ensembl Show fit	non-histone chromosomal protein HMG-14-like
chr10_-_97756521 Show fit	0.07	ENSRNOT00000045902	Slc16a6 Links NCBI RGD Ensembl Show fit	solute carrier family 16, member 6
chr3_+_176691329 Show fit	0.07	ENSRNOT00000017319	Ppdpf Links NCBI RGD Ensembl Show fit	pancreatic progenitor cell differentiation and proliferation factor
chr6_+_42852683 Show fit	0.07	ENSRNOT00000079185	Odc1 Links NCBI RGD Ensembl Show fit	ornithine decarboxylase 1
chr9_+_81672758 Show fit	0.06	ENSRNOT00000020646	Ctdsp1 Links NCBI RGD Ensembl Show fit	CTD small phosphatase 1
chr1_-_164205222 Show fit	0.06	ENSRNOT00000035774	Mogat2 Links NCBI RGD Ensembl Show fit	monoacylglycerol O-acyltransferase 2
chr1_+_147021436 Show fit	0.06	ENSRNOT00000042490	F8a1 Links NCBI RGD Ensembl Show fit	coagulation factor VIII-associated 1
chr1_+_264504591 Show fit	0.06	ENSRNOT00000050076	Pax2 Links NCBI RGD Ensembl Show fit	paired box 2
chr13_+_47454591 Show fit	0.06	ENSRNOT00000005791	LOC498222 Links NCBI RGD Ensembl Show fit	similar to specifically androgen-regulated protein
chr10_-_105116916 Show fit	0.06	ENSRNOT00000012373	Evpl Links NCBI RGD Ensembl Show fit	envoplakin
chr7_+_79138925 Show fit	0.06	ENSRNOT00000047511	AABR07057586.1 Links NCBI RGD Ensembl Show fit
chr5_-_164747083 Show fit	0.06	ENSRNOT00000010433	Plod1 Links NCBI RGD Ensembl Show fit	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
chr6_+_23757225 Show fit	0.06	ENSRNOT00000005553	LOC298795 Links NCBI RGD Ensembl Show fit	similar to 14-3-3 protein sigma
chr5_-_152198813 Show fit	0.05	ENSRNOT00000082953	Hmgn2 Links NCBI RGD Ensembl Show fit	high mobility group nucleosomal binding domain 2
chr1_-_225128740 Show fit	0.05	ENSRNOT00000026897	Rom1 Links NCBI RGD Ensembl Show fit	retinal outer segment membrane protein 1
chr1_-_242373764 Show fit	0.05	ENSRNOT00000076544	Fam122a Links NCBI RGD Ensembl Show fit	family with sequence similarity 122A
chr17_+_30965942 Show fit	0.05	ENSRNOT00000060143	Pxdc1 Links NCBI RGD Ensembl Show fit	PX domain containing 1
chr2_-_204254699 Show fit	0.05	ENSRNOT00000021487	Mab21l3 Links NCBI RGD Ensembl Show fit	mab-21 like 3
chr2_+_189400696 Show fit	0.05	ENSRNOT00000046919 ENSRNOT00000089801	LOC361985 Links NCBI RGD Ensembl Show fit	similar to NICE-3
chr16_-_36080191 Show fit	0.04	ENSRNOT00000017635	Hmgb2l1 Links NCBI RGD Ensembl Show fit	high mobility group box 2-like 1
chr14_-_91904433 Show fit	0.04	ENSRNOT00000005857	Fignl1 Links NCBI RGD Ensembl Show fit	fidgetin-like 1
chr8_-_50231357 Show fit	0.04	ENSRNOT00000081737	Tagln Links NCBI RGD Ensembl Show fit	transgelin
chr2_+_189106039 Show fit	0.04	ENSRNOT00000028210	Ube2q1 Links NCBI RGD Ensembl Show fit	ubiquitin conjugating enzyme E2 Q1
chr3_+_113319456 Show fit	0.04	ENSRNOT00000051354	Ckmt1 Links NCBI RGD Ensembl Show fit	creatine kinase, mitochondrial 1
chr8_+_71719563 Show fit	0.04	ENSRNOT00000022828	Ppib Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase B
chr7_-_139483997 Show fit	0.04	ENSRNOT00000086062	Col2a1 Links NCBI RGD Ensembl Show fit	collagen type II alpha 1 chain
chr8_+_116754178 Show fit	0.04	ENSRNOT00000068295 ENSRNOT00000084429	Uba7 Links NCBI RGD Ensembl Show fit	ubiquitin-like modifier activating enzyme 7
chr10_+_66509107 Show fit	0.04	ENSRNOT00000017230	RGD1565317 Links NCBI RGD Ensembl Show fit	similar to ubiquitin-like/S30 ribosomal fusion protein
chr9_+_81518176 Show fit	0.04	ENSRNOT00000078317 ENSRNOT00000019265 ENSRNOT00000088246 ENSRNOT00000084682	Arpc2 Links NCBI RGD Ensembl Show fit	actin related protein 2/3 complex, subunit 2
chr13_+_52854031 Show fit	0.04	ENSRNOT00000013738 ENSRNOT00000086004	Tmem9 Links NCBI RGD Ensembl Show fit	transmembrane protein 9
chr4_+_145427367 Show fit	0.04	ENSRNOT00000037788	Il17rc Links NCBI RGD Ensembl Show fit	interleukin 17 receptor C
chrX_-_111887906 Show fit	0.03	ENSRNOT00000085118	Tsc22d3 Links NCBI RGD Ensembl Show fit	TSC22 domain family, member 3
chr11_+_39482408 Show fit	0.03	ENSRNOT00000075126	Hmgn1 Links NCBI RGD Ensembl Show fit	high mobility group nucleosome binding domain 1
chr12_+_15890170 Show fit	0.03	ENSRNOT00000001654	Gna12 Links NCBI RGD Ensembl Show fit	G protein subunit alpha 12
chr13_-_49487892 Show fit	0.03	ENSRNOT00000044972	Nfasc Links NCBI RGD Ensembl Show fit	neurofascin
chr20_+_3553455 Show fit	0.03	ENSRNOT00000090080	Ddr1 Links NCBI RGD Ensembl Show fit	discoidin domain receptor tyrosine kinase 1
chr7_+_98770840 Show fit	0.03	ENSRNOT00000011891	Rnf139 Links NCBI RGD Ensembl Show fit	ring finger protein 139
chr9_-_17114177 Show fit	0.03	ENSRNOT00000061185	Lrrc73 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 73
chr4_+_21317695 Show fit	0.03	ENSRNOT00000007572	Grm3 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 3
chr20_-_11620945 Show fit	0.03	ENSRNOT00000079725	Krtap12-2 Links NCBI RGD Ensembl Show fit	keratin associated protein 12-2
chr8_+_117679278 Show fit	0.02	ENSRNOT00000042114	Uqcrc1 Links NCBI RGD Ensembl Show fit	ubiquinol-cytochrome c reductase core protein I
chr10_+_55675575 Show fit	0.02	ENSRNOT00000057295	Vamp2 Links NCBI RGD Ensembl Show fit	vesicle-associated membrane protein 2
chr5_-_14356692 Show fit	0.02	ENSRNOT00000085654	Atp6v1h Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V1 subunit H
chr8_+_115151627 Show fit	0.02	ENSRNOT00000064252	Abhd14b Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 14b
chr7_-_116936674 Show fit	0.02	ENSRNOT00000029456	Eef1d Links NCBI RGD Ensembl Show fit	eukaryotic translation elongation factor 1 delta
chr11_+_36075709 Show fit	0.02	ENSRNOT00000002247	Ets2 Links NCBI RGD Ensembl Show fit	ETS proto-oncogene 2, transcription factor
chr3_+_161236898 Show fit	0.02	ENSRNOT00000082303 ENSRNOT00000020323	Ube2c Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2C
chr12_-_19582185 Show fit	0.02	ENSRNOT00000060020 ENSRNOT00000085853	RGD1305455 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ10925
chr1_-_199037267 Show fit	0.02	ENSRNOT00000078779	Ccdc189 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 189
chr9_+_81518584 Show fit	0.02	ENSRNOT00000084309	Arpc2 Links NCBI RGD Ensembl Show fit	actin related protein 2/3 complex, subunit 2
chr13_-_104284068 Show fit	0.02	ENSRNOT00000005407	LOC100912365 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100912365
chr8_-_6034142 Show fit	0.02	ENSRNOT00000014560	Birc2 Links NCBI RGD Ensembl Show fit	baculoviral IAP repeat-containing 2
chr3_+_11476883 Show fit	0.02	ENSRNOT00000072241	Naif1 Links NCBI RGD Ensembl Show fit	nuclear apoptosis inducing factor 1
chr19_+_56179111 Show fit	0.02	ENSRNOT00000046155	Tcf25 Links NCBI RGD Ensembl Show fit	transcription factor 25
chr11_-_28527890 Show fit	0.02	ENSRNOT00000002138	Cldn8 Links NCBI RGD Ensembl Show fit	claudin 8
chr2_+_58462588 Show fit	0.02	ENSRNOT00000083799	Nadk2 Links NCBI RGD Ensembl Show fit	NAD kinase 2, mitochondrial
chr5_-_58124681 Show fit	0.02	ENSRNOT00000019795	Sigmar1 Links NCBI RGD Ensembl Show fit	sigma non-opioid intracellular receptor 1
chr4_-_116278615 Show fit	0.01	ENSRNOT00000020505	Cyp26b1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 26, subfamily b, polypeptide 1
chr4_+_130332076 Show fit	0.01	ENSRNOT00000083127	Mitf Links NCBI RGD Ensembl Show fit	melanogenesis associated transcription factor
chr19_+_32188267 Show fit	0.01	ENSRNOT00000025079	Smad1 Links NCBI RGD Ensembl Show fit	SMAD family member 1
chr10_+_61403130 Show fit	0.01	ENSRNOT00000092490 ENSRNOT00000077649	Ccdc92b Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 92B
chr7_-_143228060 Show fit	0.01	ENSRNOT00000088923 ENSRNOT00000012640	Krt75 Links NCBI RGD Ensembl Show fit	keratin 75
chr1_+_44446765 Show fit	0.01	ENSRNOT00000030132	Cldn20 Links NCBI RGD Ensembl Show fit	claudin 20
chr20_+_5080070 Show fit	0.01	ENSRNOT00000086950 ENSRNOT00000077082	Abhd16a Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 16A
chr8_+_113603533 Show fit	0.01	ENSRNOT00000017280	Mrpl3 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L3
chr1_+_228690119 Show fit	0.01	ENSRNOT00000087169	Pfpl Links NCBI RGD Ensembl Show fit	pore forming protein-like
chr2_+_199199845 Show fit	0.01	ENSRNOT00000020932	LOC100909441 Links NCBI RGD Ensembl Show fit	tubulin alpha-1C chain-like
chr8_-_59239954 Show fit	0.01	ENSRNOT00000016104	Acsbg1 Links NCBI RGD Ensembl Show fit	acyl-CoA synthetase bubblegum family member 1
chr13_-_82006005 Show fit	0.01	ENSRNOT00000039581	Mettl11b Links NCBI RGD Ensembl Show fit	methyltransferase like 11B
chr3_-_8659102 Show fit	0.01	ENSRNOT00000050908	Zdhhc12 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 12
chr14_+_108007724 Show fit	0.01	ENSRNOT00000014062	Xpo1 Links NCBI RGD Ensembl Show fit	exportin 1
chrX_+_106253355 Show fit	0.00	ENSRNOT00000004252	LOC102552920 Links NCBI RGD Ensembl Show fit	armadillo repeat-containing X-linked protein 5-like
chr1_+_225129097 Show fit	0.00	ENSRNOT00000026938	Eml3 Links NCBI RGD Ensembl Show fit	echinoderm microtubule associated protein like 3
chr8_-_21661259 Show fit	0.00	ENSRNOT00000068308	Fbxl12 Links NCBI RGD Ensembl Show fit	F-box and leucine-rich repeat protein 12
chr8_-_117446019 Show fit	0.00	ENSRNOT00000042577	Arih2 Links NCBI RGD Ensembl Show fit	ariadne RBR E3 ubiquitin protein ligase 2
chr15_+_49069145 Show fit	0.00	ENSRNOT00000019487	Scara5 Links NCBI RGD Ensembl Show fit	scavenger receptor class A, member 5
chr14_-_83685273 Show fit	0.00	ENSRNOT00000026134	Rnf185 Links NCBI RGD Ensembl Show fit	ring finger protein 185
chr10_+_59893067 Show fit	0.00	ENSRNOT00000056443	Spata22 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 22

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0044375	regulation of peroxisome size(GO:0044375)
0.0	0.1	GO:0060266	negative regulation of respiratory burst involved in inflammatory response(GO:0060266)
0.0	0.1	GO:0006651	diacylglycerol biosynthetic process(GO:0006651)
0.0	0.1	GO:0035566	regulation of metanephros size(GO:0035566)
0.0	0.1	GO:0046947	hydroxylysine metabolic process(GO:0046946) hydroxylysine biosynthetic process(GO:0046947)
0.0	0.1	GO:2000814	positive regulation of barbed-end actin filament capping(GO:2000814)
0.0	0.0	GO:1901873	regulation of post-translational protein modification(GO:1901873)
0.0	0.1	GO:0033387	putrescine biosynthetic process from ornithine(GO:0033387)
0.0	0.1	GO:0034551	respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551)
0.0	0.0	GO:0000720	pyrimidine dimer repair by nucleotide-excision repair(GO:0000720)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0036195	muscle cell projection(GO:0036194) muscle cell projection membrane(GO:0036195)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0016403	dimethylargininase activity(GO:0016403)
0.0	0.1	GO:0008475	procollagen-lysine 5-dioxygenase activity(GO:0008475) procollagen glucosyltransferase activity(GO:0033823)
0.0	0.1	GO:0004586	ornithine decarboxylase activity(GO:0004586)
0.0	0.0	GO:0044378	non-sequence-specific DNA binding, bending(GO:0044378)
0.0	0.0	GO:0031752	D5 dopamine receptor binding(GO:0031752)
0.0	0.1	GO:0008420	CTD phosphatase activity(GO:0008420)
0.0	0.1	GO:0003846	2-acylglycerol O-acyltransferase activity(GO:0003846)
0.0	0.1	GO:0035650	AP-1 adaptor complex binding(GO:0035650)