GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Twist1 Links NCBI RGD Ensembl	ENSRNOG00000011101	twist family bHLH transcription factor 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Twist1	rn6_v1_chr6_+_53401109_53401109	0.06	9.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr19_-_15840990 Show fit	0.07	ENSRNOT00000015583	Irx3 Links NCBI RGD Ensembl Show fit	iroquois homeobox 3
chr6_-_22281886 Show fit	0.04	ENSRNOT00000039375	Spast Links NCBI RGD Ensembl Show fit	spastin
chr1_-_242152834 Show fit	0.04	ENSRNOT00000071614 ENSRNOT00000020412	Fxn Links NCBI RGD Ensembl Show fit	frataxin
chr5_-_24631679 Show fit	0.03	ENSRNOT00000010846 ENSRNOT00000067129	Esrp1 Links NCBI RGD Ensembl Show fit	epithelial splicing regulatory protein 1
chr1_+_80383050 Show fit	0.03	ENSRNOT00000023451	Exoc3l2 Links NCBI RGD Ensembl Show fit	exocyst complex component 3-like 2
chr8_-_48672732 Show fit	0.03	ENSRNOT00000079275	Hmbs Links NCBI RGD Ensembl Show fit	hydroxymethylbilane synthase
chr1_-_221431713 Show fit	0.03	ENSRNOT00000028485	Tm7sf2 Links NCBI RGD Ensembl Show fit	transmembrane 7 superfamily member 2
chr15_+_86153628 Show fit	0.03	ENSRNOT00000012842	Uchl3 Links NCBI RGD Ensembl Show fit	ubiquitin C-terminal hydrolase L3
chr6_-_22281724 Show fit	0.03	ENSRNOT00000079137	Spast Links NCBI RGD Ensembl Show fit	spastin
chr8_+_82560971 Show fit	0.03	ENSRNOT00000083410	Lysmd2 Links NCBI RGD Ensembl Show fit	LysM domain containing 2
chr3_+_35271786 Show fit	0.03	ENSRNOT00000065989	Lypd6b Links NCBI RGD Ensembl Show fit	LY6/PLAUR domain containing 6B
chr20_-_2103864 Show fit	0.03	ENSRNOT00000001014	Rnf39 Links NCBI RGD Ensembl Show fit	ring finger protein 39
chr10_+_91187593 Show fit	0.03	ENSRNOT00000004163	Acbd4 Links NCBI RGD Ensembl Show fit	acyl-CoA binding domain containing 4
chr6_+_1657331 Show fit	0.02	ENSRNOT00000049672 ENSRNOT00000079864	Qpct Links NCBI RGD Ensembl Show fit	glutaminyl-peptide cyclotransferase
chr10_-_90999506 Show fit	0.02	ENSRNOT00000034401	Gfap Links NCBI RGD Ensembl Show fit	glial fibrillary acidic protein
chr10_+_15088935 Show fit	0.02	ENSRNOT00000030273	Gng13 Links NCBI RGD Ensembl Show fit	G protein subunit gamma 13
chr8_+_82560761 Show fit	0.02	ENSRNOT00000014301	Lysmd2 Links NCBI RGD Ensembl Show fit	LysM domain containing 2
chr3_-_51297852 Show fit	0.02	ENSRNOT00000001607	Cobll1 Links NCBI RGD Ensembl Show fit	cordon-bleu WH2 repeat protein-like 1
chr10_+_75032365 Show fit	0.02	ENSRNOT00000010448	Supt4h1 Links NCBI RGD Ensembl Show fit	SPT4 homolog, DSIF elongation factor subunit
chr7_-_130120579 Show fit	0.02	ENSRNOT00000044376	Mapk12 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 12
chr9_-_17827032 Show fit	0.02	ENSRNOT00000026929	Slc35b2 Links NCBI RGD Ensembl Show fit	solute carrier family 35 member B2
chr9_+_27343853 Show fit	0.02	ENSRNOT00000072794	Tmem14a Links NCBI RGD Ensembl Show fit	transmembrane protein 14A
chr11_+_68198709 Show fit	0.01	ENSRNOT00000003048	Dirc2 Links NCBI RGD Ensembl Show fit	disrupted in renal carcinoma 2
chr7_+_129812789 Show fit	0.01	ENSRNOT00000006357	Creld2 Links NCBI RGD Ensembl Show fit	cysteine-rich with EGF-like domains 2
chr7_+_141973553 Show fit	0.01	ENSRNOT00000052075	Mettl7a Links NCBI RGD Ensembl Show fit	methyltransferase like 7A
chr5_-_77173502 Show fit	0.01	ENSRNOT00000023588	Slc46a2 Links NCBI RGD Ensembl Show fit	solute carrier family 46, member 2
chr8_-_55171718 Show fit	0.01	ENSRNOT00000080736	LOC689959 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC689959
chr3_-_171134655 Show fit	0.01	ENSRNOT00000028960	RGD1561252 Links NCBI RGD Ensembl Show fit	similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (Ubiquitin thiolesterase L3)
chr18_-_63488027 Show fit	0.01	ENSRNOT00000023763	Ptpn2 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 2
chr3_-_170955399 Show fit	0.01	ENSRNOT00000084990	Bmp7 Links NCBI RGD Ensembl Show fit	bone morphogenetic protein 7
chr20_+_3364814 Show fit	0.01	ENSRNOT00000001077	RGD1302996 Links NCBI RGD Ensembl Show fit	hypothetical protein MGC:15854
chr19_-_25261911 Show fit	0.01	ENSRNOT00000045180 ENSRNOT00000009806	Cc2d1a Links NCBI RGD Ensembl Show fit	coiled-coil and C2 domain containing 1A
chr1_+_100470722 Show fit	0.01	ENSRNOT00000086917	Aspdh Links NCBI RGD Ensembl Show fit	aspartate dehydrogenase domain containing
chr19_-_49623758 Show fit	0.01	ENSRNOT00000071130	Pkd1l2 Links NCBI RGD Ensembl Show fit	polycystic kidney disease 1-like 2
chr3_-_12029877 Show fit	0.01	ENSRNOT00000022327	Slc2a8 Links NCBI RGD Ensembl Show fit	solute carrier family 2 member 8
chr3_+_100768637 Show fit	0.01	ENSRNOT00000083542	Bdnf Links NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr5_+_62071346 Show fit	0.01	ENSRNOT00000012478	Anp32b Links NCBI RGD Ensembl Show fit	acidic nuclear phosphoprotein 32 family member B
chr1_+_143675985 Show fit	0.01	ENSRNOT00000078500	Tm6sf1 Links NCBI RGD Ensembl Show fit	transmembrane 6 superfamily member 1
chr3_+_172195844 Show fit	0.01	ENSRNOT00000034915	Npepl1 Links NCBI RGD Ensembl Show fit	aminopeptidase-like 1
chr1_-_100530183 Show fit	0.01	ENSRNOT00000067754	Mybpc2 Links NCBI RGD Ensembl Show fit	myosin binding protein C, fast-type
chr3_-_130114770 Show fit	0.01	ENSRNOT00000010638	Jag1 Links NCBI RGD Ensembl Show fit	jagged 1
chr15_-_3435888 Show fit	0.01	ENSRNOT00000016709	Adk Links NCBI RGD Ensembl Show fit	adenosine kinase
chr10_+_58776792 Show fit	0.01	ENSRNOT00000019574	Txndc17 Links NCBI RGD Ensembl Show fit	thioredoxin domain containing 17
chr18_-_29340403 Show fit	0.01	ENSRNOT00000025157	Hbegf Links NCBI RGD Ensembl Show fit	heparin-binding EGF-like growth factor
chr5_-_151396507 Show fit	0.01	ENSRNOT00000012710	Gpr3 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 3
chr1_-_73753128 Show fit	0.01	ENSRNOT00000068459	Ttyh1 Links NCBI RGD Ensembl Show fit	tweety family member 1
chr10_+_13000090 Show fit	0.00	ENSRNOT00000004845	Cldn6 Links NCBI RGD Ensembl Show fit	claudin 6
chr4_+_140703619 Show fit	0.00	ENSRNOT00000009563	Bhlhe40 Links NCBI RGD Ensembl Show fit	basic helix-loop-helix family, member e40
chr7_-_97759852 Show fit	0.00	ENSRNOT00000007484	Derl1 Links NCBI RGD Ensembl Show fit	derlin 1
chr12_-_6740714 Show fit	0.00	ENSRNOT00000001205	Medag Links NCBI RGD Ensembl Show fit	mesenteric estrogen-dependent adipogenesis
chr7_-_12274803 Show fit	0.00	ENSRNOT00000049146	Apc2 Links NCBI RGD Ensembl Show fit	APC2, WNT signaling pathway regulator
chr1_+_127802978 Show fit	0.00	ENSRNOT00000055877	Adamts17 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 17
chrX_+_33599671 Show fit	0.00	ENSRNOT00000006843	Txlng Links NCBI RGD Ensembl Show fit	taxilin gamma
chr15_-_33428942 Show fit	0.00	ENSRNOT00000019618 ENSRNOT00000092160	Slc7a8 Links NCBI RGD Ensembl Show fit	solute carrier family 7 member 8
chr12_+_17416327 Show fit	0.00	ENSRNOT00000089590 ENSRNOT00000092186	Adap1 Links NCBI RGD Ensembl Show fit	ArfGAP with dual PH domains 1
chr1_-_72468738 Show fit	0.00	ENSRNOT00000029136	Zfp628 Links NCBI RGD Ensembl Show fit	zinc finger protein 628
chr15_-_45927804 Show fit	0.00	ENSRNOT00000086271	Ints6 Links NCBI RGD Ensembl Show fit	integrator complex subunit 6

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0072086	specification of loop of Henle identity(GO:0072086)
0.0	0.0	GO:0018282	metal incorporation into metallo-sulfur cluster(GO:0018282) iron incorporation into metallo-sulfur cluster(GO:0018283)
0.0	0.1	GO:0031117	positive regulation of microtubule depolymerization(GO:0031117)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0004852	uroporphyrinogen-III synthase activity(GO:0004852)