GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Vsx2 Links NCBI RGD Ensembl	ENSRNOG00000011918	visual system homeobox 2
Dlx3 Links NCBI RGD Ensembl	ENSRNOG00000004278	distal-less homeobox 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Vsx2	rn6_v1_chr6_+_108285822_108285822	0.71	1.8e-01	Click!
Dlx3	rn6_v1_chr10_+_82937971_82937971	-0.60	2.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_17186679 Show fit	0.42	ENSRNOT00000001730	Uncx Links NCBI RGD Ensembl Show fit	UNC homeobox
chr12_-_2174131 Show fit	0.37	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr3_-_66417741 Show fit	0.14	ENSRNOT00000007662	Neurod1 Links NCBI RGD Ensembl Show fit	neuronal differentiation 1
chr2_+_145174876 Show fit	0.10	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr18_-_26211445 Show fit	0.09	ENSRNOT00000027739	Nrep Links NCBI RGD Ensembl Show fit	neuronal regeneration related protein
chr4_+_94696965 Show fit	0.09	ENSRNOT00000064696	Grid2 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor delta type subunit 2
chr10_-_18131562 Show fit	0.08	ENSRNOT00000006676	Tlx3 Links NCBI RGD Ensembl Show fit	T-cell leukemia, homeobox 3
chr10_+_103395511 Show fit	0.08	ENSRNOT00000004256	Gprc5c Links NCBI RGD Ensembl Show fit	G protein-coupled receptor, class C, group 5, member C
chr13_+_31081804 Show fit	0.04	ENSRNOT00000041413	Cdh7 Links NCBI RGD Ensembl Show fit	cadherin 7
chr13_+_71107465 Show fit	0.04	ENSRNOT00000003239	Rgs8 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 8
chr6_+_58468155 Show fit	0.03	ENSRNOT00000091263	Etv1 Links NCBI RGD Ensembl Show fit	ets variant 1
chr3_+_95715193 Show fit	0.03	ENSRNOT00000089525	Pax6 Links NCBI RGD Ensembl Show fit	paired box 6
chr1_-_124803363 Show fit	0.02	ENSRNOT00000066380	Klf13 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 13
chr4_-_117575154 Show fit	0.02	ENSRNOT00000075813	LOC102556148 Links NCBI RGD Ensembl Show fit	probable N-acetyltransferase CML2-like
chr12_-_35979193 Show fit	0.02	ENSRNOT00000071104	Tmem132b Links NCBI RGD Ensembl Show fit	transmembrane protein 132B
chr12_-_45801842 Show fit	0.02	ENSRNOT00000078837	AABR07036513.1 Links NCBI RGD Ensembl Show fit
chr10_+_91217079 Show fit	0.02	ENSRNOT00000004218	Hexim2 Links NCBI RGD Ensembl Show fit	hexamethylene bis-acetamide inducible 2
chr12_-_19167015 Show fit	0.02	ENSRNOT00000001797	Gjc3 Links NCBI RGD Ensembl Show fit	gap junction protein, gamma 3
chr20_+_44680449 Show fit	0.02	ENSRNOT00000000728	Traf3ip2 Links NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr17_-_2705123 Show fit	0.02	ENSRNOT00000024940	Olr1652 Links NCBI RGD Ensembl Show fit	olfactory receptor 1652
chr6_-_111417813 Show fit	0.02	ENSRNOT00000016324 ENSRNOT00000085458	Sptlc2 Links NCBI RGD Ensembl Show fit	serine palmitoyltransferase, long chain base subunit 2
chr7_-_142348232 Show fit	0.02	ENSRNOT00000078848	Galnt6 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 6
chr18_-_26656879 Show fit	0.01	ENSRNOT00000086729	Epb41l4a Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4A
chr5_-_145423172 Show fit	0.01	ENSRNOT00000081919	Gjb5 Links NCBI RGD Ensembl Show fit	gap junction protein, beta 5
chr1_+_217345545 Show fit	0.01	ENSRNOT00000071741	Shank2 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 2
chr5_-_139748489 Show fit	0.01	ENSRNOT00000078741	Nfyc Links NCBI RGD Ensembl Show fit	nuclear transcription factor Y subunit gamma
chr12_-_10335499 Show fit	0.01	ENSRNOT00000071567	Wasf3 Links NCBI RGD Ensembl Show fit	WAS protein family, member 3
chr4_-_17594598 Show fit	0.01	ENSRNOT00000008936	Sema3e Links NCBI RGD Ensembl Show fit	semaphorin 3E
chr2_-_30634243 Show fit	0.01	ENSRNOT00000077537	Marveld2 Links NCBI RGD Ensembl Show fit	MARVEL domain containing 2
chr16_+_35934970 Show fit	0.01	ENSRNOT00000084707 ENSRNOT00000016474	Galnt7 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 7
chr7_-_2941122 Show fit	0.01	ENSRNOT00000082107	Esyt1 Links NCBI RGD Ensembl Show fit	extended synaptotagmin 1
chr4_-_4473307 Show fit	0.01	ENSRNOT00000045773	Dpp6 Links NCBI RGD Ensembl Show fit	dipeptidyl peptidase like 6
chr1_+_13595295 Show fit	0.01	ENSRNOT00000079250	Nhsl1 Links NCBI RGD Ensembl Show fit	NHS-like 1
chr1_+_193076430 Show fit	0.01	ENSRNOT00000086492 ENSRNOT00000017885	Tnrc6a Links NCBI RGD Ensembl Show fit	trinucleotide repeat containing 6a
chr6_-_115616766 Show fit	0.01	ENSRNOT00000006143 ENSRNOT00000045870	Sel1l Links NCBI RGD Ensembl Show fit	SEL1L ERAD E3 ligase adaptor subunit
chr8_+_81863619 Show fit	0.01	ENSRNOT00000080608	Fam214a Links NCBI RGD Ensembl Show fit	family with sequence similarity 214, member A
chr10_-_87261717 Show fit	0.01	ENSRNOT00000015740	Krt27 Links NCBI RGD Ensembl Show fit	keratin 27
chr14_+_76732650 Show fit	0.01	ENSRNOT00000088197	Clnk Links NCBI RGD Ensembl Show fit	cytokine-dependent hematopoietic cell linker
chr3_+_47578384 Show fit	0.01	ENSRNOT00000082769	Psmd14 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 14
chr8_+_47674321 Show fit	0.01	ENSRNOT00000026170 ENSRNOT00000078776	Trim29 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 29
chr5_-_139749050 Show fit	0.01	ENSRNOT00000056651	Nfyc Links NCBI RGD Ensembl Show fit	nuclear transcription factor Y subunit gamma
chr18_+_51523758 Show fit	0.01	ENSRNOT00000078518	Gramd3 Links NCBI RGD Ensembl Show fit	GRAM domain containing 3
chr12_+_18679789 Show fit	0.01	ENSRNOT00000001863	Cyp3a9 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 3, subfamily a, polypeptide 9
chr13_-_100672731 Show fit	0.01	ENSRNOT00000004319	Degs1 Links NCBI RGD Ensembl Show fit	delta(4)-desaturase, sphingolipid 1
chr4_-_21920651 Show fit	0.01	ENSRNOT00000066211	Tmem243 Links NCBI RGD Ensembl Show fit	transmembrane protein 243
chr20_-_27578244 Show fit	0.01	ENSRNOT00000000708	Fam26d Links NCBI RGD Ensembl Show fit	family with sequence similarity 26, member D
chr9_-_53315915 Show fit	0.01	ENSRNOT00000038093	Mstn Links NCBI RGD Ensembl Show fit	myostatin
chr3_+_117421604 Show fit	0.01	ENSRNOT00000008860 ENSRNOT00000008857	Slc12a1 Links NCBI RGD Ensembl Show fit	solute carrier family 12 member 1
chr20_+_29655226 Show fit	0.01	ENSRNOT00000089059	Spock2 Links NCBI RGD Ensembl Show fit	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
chr2_+_226563050 Show fit	0.01	ENSRNOT00000065111	Bcar3 Links NCBI RGD Ensembl Show fit	breast cancer anti-estrogen resistance 3
chr1_+_99599620 Show fit	0.01	ENSRNOT00000024690	Ctu1 Links NCBI RGD Ensembl Show fit	cytosolic thiouridylase subunit 1
chr8_+_48718329 Show fit	0.01	ENSRNOT00000089763	Slc37a4 Links NCBI RGD Ensembl Show fit	solute carrier family 37 member 4
chr2_+_80269661 Show fit	0.01	ENSRNOT00000015975	AABR07008940.1 Links NCBI RGD Ensembl Show fit
chr7_-_107391184 Show fit	0.01	ENSRNOT00000056793	Tmem71 Links NCBI RGD Ensembl Show fit	transmembrane protein 71
chr2_-_33025271 Show fit	0.01	ENSRNOT00000074941	NEWGENE_1310139 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr4_-_150485781 Show fit	0.01	ENSRNOT00000008763	Zfp248 Links NCBI RGD Ensembl Show fit	zinc finger protein 248
chr2_+_187951344 Show fit	0.01	ENSRNOT00000027123	Ssr2 Links NCBI RGD Ensembl Show fit	signal sequence receptor, beta
chr9_-_38495126 Show fit	0.01	ENSRNOT00000016933 ENSRNOT00000090385	Rab23 Links NCBI RGD Ensembl Show fit	RAB23, member RAS oncogene family
chr6_-_123577695 Show fit	0.01	ENSRNOT00000006604	Foxn3 Links NCBI RGD Ensembl Show fit	forkhead box N3
chr3_+_95233874 Show fit	0.01	ENSRNOT00000079743	LOC691083 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691083
chr20_-_3728844 Show fit	0.00	ENSRNOT00000074958	Psors1c2 Links NCBI RGD Ensembl Show fit	psoriasis susceptibility 1 candidate 2
chr18_+_79773608 Show fit	0.00	ENSRNOT00000088484	Zfp516 Links NCBI RGD Ensembl Show fit	zinc finger protein 516
chr7_+_3173287 Show fit	0.00	ENSRNOT00000092037	Pym1 Links NCBI RGD Ensembl Show fit	PYM homolog 1, exon junction complex associated factor
chr5_-_150704117 Show fit	0.00	ENSRNOT00000067455	Sesn2 Links NCBI RGD Ensembl Show fit	sestrin 2
chr1_-_220938814 Show fit	0.00	ENSRNOT00000028081	Ovol1 Links NCBI RGD Ensembl Show fit	ovo like transcriptional repressor 1
chr12_+_46042413 Show fit	0.00	ENSRNOT00000046882	Ccdc60 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 60
chrX_+_136466779 Show fit	0.00	ENSRNOT00000093268 ENSRNOT00000068717	Arhgap36 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 36
chr18_+_16544508 Show fit	0.00	ENSRNOT00000020601	Elp2 Links NCBI RGD Ensembl Show fit	elongator acetyltransferase complex subunit 2
chr4_-_100252755 Show fit	0.00	ENSRNOT00000017301	Vamp8 Links NCBI RGD Ensembl Show fit	vesicle-associated membrane protein 8
chr4_-_50312608 Show fit	0.00	ENSRNOT00000010019	Fezf1 Links NCBI RGD Ensembl Show fit	Fez family zinc finger 1
chr9_+_71915421 Show fit	0.00	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr5_-_28131133 Show fit	0.00	ENSRNOT00000067331	Slc26a7 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 7
chr20_-_25826658 Show fit	0.00	ENSRNOT00000057950 ENSRNOT00000084660	Ctnna3 Links NCBI RGD Ensembl Show fit	catenin alpha 3
chr7_+_2752680 Show fit	0.00	ENSRNOT00000033726	Cs Links NCBI RGD Ensembl Show fit	citrate synthase
chr4_+_31333970 Show fit	0.00	ENSRNOT00000064866	LOC100911994 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 132-like
chr1_+_127802978 Show fit	0.00	ENSRNOT00000055877	Adamts17 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 17
chr13_+_51229890 Show fit	0.00	ENSRNOT00000060669	Cyb5r1 Links NCBI RGD Ensembl Show fit	cytochrome b5 reductase 1
chr8_+_36766977 Show fit	0.00	ENSRNOT00000017648	Pus3 Links NCBI RGD Ensembl Show fit	pseudouridylate synthase 3
chr1_-_101095594 Show fit	0.00	ENSRNOT00000027944	Fcgrt Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor and transporter
chr13_+_90943255 Show fit	0.00	ENSRNOT00000011539	Vsig8 Links NCBI RGD Ensembl Show fit	V-set and immunoglobulin domain containing 8
chr7_+_38900593 Show fit	0.00	ENSRNOT00000072166	Epyc Links NCBI RGD Ensembl Show fit	epiphycan
chr2_-_113616766 Show fit	0.00	ENSRNOT00000016858 ENSRNOT00000074723	Tmem212 Links NCBI RGD Ensembl Show fit	transmembrane protein 212
chr8_+_103938520 Show fit	0.00	ENSRNOT00000067835	Gk5 Links NCBI RGD Ensembl Show fit	glycerol kinase 5 (putative)
chr7_+_78558701 Show fit	0.00	ENSRNOT00000006393	Rims2 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 2
chr1_-_131460473 Show fit	0.00	ENSRNOT00000084336	Nr2f2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group F, member 2
chr19_-_17399548 Show fit	0.00	ENSRNOT00000075991	Chd9 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 9
chr9_+_81566074 Show fit	0.00	ENSRNOT00000074131 ENSRNOT00000046229 ENSRNOT00000090383	Pnkd Links NCBI RGD Ensembl Show fit	paroxysmal nonkinesigenic dyskinesia
chr2_-_158133861 Show fit	0.00	ENSRNOT00000090700	Veph1 Links NCBI RGD Ensembl Show fit	ventricular zone expressed PH domain-containing 1
chr16_-_73152921 Show fit	0.00	ENSRNOT00000048602	Zmat4 Links NCBI RGD Ensembl Show fit	zinc finger, matrin type 4
chr15_-_27819376 Show fit	0.00	ENSRNOT00000067400	A930018M24Rik Links NCBI RGD Ensembl Show fit	RIKEN cDNA A930018M24 gene
chr7_-_122581777 Show fit	0.00	ENSRNOT00000025758	Slc25a17 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 17
chr14_-_19159923 Show fit	0.00	ENSRNOT00000003879	Afp Links NCBI RGD Ensembl Show fit	alpha-fetoprotein
chr3_+_48106099 Show fit	0.00	ENSRNOT00000007218	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chr10_+_82032656 Show fit	0.00	ENSRNOT00000067751	Ankrd40 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 40
chr14_+_39964588 Show fit	0.00	ENSRNOT00000003240	Gabrg1 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor gamma 1 subunit
chr17_-_45746753 Show fit	0.00	ENSRNOT00000077475	RGD1564243 Links NCBI RGD Ensembl Show fit	similar to brain Zn-finger protein
chr13_+_76962504 Show fit	0.00	ENSRNOT00000076581	Rfwd2 Links NCBI RGD Ensembl Show fit	ring finger and WD repeat domain 2
chr2_+_266315036 Show fit	0.00	ENSRNOT00000055245	Wls Links NCBI RGD Ensembl Show fit	wntless Wnt ligand secretion mediator
chr13_+_98311827 Show fit	0.00	ENSRNOT00000082844	Cdc42bpa Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase alpha
chr11_-_46693565 Show fit	0.00	ENSRNOT00000044900	Impg2 Links NCBI RGD Ensembl Show fit	interphotoreceptor matrix proteoglycan 2
chr7_-_83348487 Show fit	0.00	ENSRNOT00000006685	Nudcd1 Links NCBI RGD Ensembl Show fit	NudC domain containing 1
chr9_-_81566096 Show fit	0.00	ENSRNOT00000019497	Aamp Links NCBI RGD Ensembl Show fit	angio-associated, migratory cell protein
chrX_+_124321551 Show fit	0.00	ENSRNOT00000074486	LOC100910807 Links NCBI RGD Ensembl Show fit	transcriptional regulator Kaiso-like
chr14_-_21128505 Show fit	0.00	ENSRNOT00000004776	Rufy3 Links NCBI RGD Ensembl Show fit	RUN and FYVE domain containing 3
chr7_+_83348694 Show fit	0.00	ENSRNOT00000006402	Eny2 Links NCBI RGD Ensembl Show fit	ENY2, transcription and export complex 2 subunit
chr4_-_28437676 Show fit	0.00	ENSRNOT00000012995	Hepacam2 Links NCBI RGD Ensembl Show fit	HEPACAM family member 2
chr1_+_185210922 Show fit	0.00	ENSRNOT00000055120	Pik3c2a Links NCBI RGD Ensembl Show fit	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr1_+_98414226 Show fit	0.00	ENSRNOT00000090785	Siglecl1 Links NCBI RGD Ensembl Show fit	SIGLEC family like 1
chr20_-_2224463 Show fit	0.00	ENSRNOT00000001019	Trim26 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 26
chr9_-_65736852 Show fit	0.00	ENSRNOT00000087458	Trak2 Links NCBI RGD Ensembl Show fit	trafficking kinesin protein 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.1	0.4	GO:0035726	common myeloid progenitor cell proliferation(GO:0035726)
0.0	0.1	GO:0060729	intestinal epithelial structure maintenance(GO:0060729)
0.0	0.0	GO:0021917	pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)