GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Zfp423 Links NCBI RGD Ensembl	ENSRNOG00000014658	zinc finger protein 423

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Zfp423	rn6_v1_chr19_+_20147037_20147037	0.94	1.6e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_-_77945016 Show fit	0.19	ENSRNOT00000076223	Zfp37 Links NCBI RGD Ensembl Show fit	zinc finger protein 37
chr10_-_18131562 Show fit	0.12	ENSRNOT00000006676	Tlx3 Links NCBI RGD Ensembl Show fit	T-cell leukemia, homeobox 3
chr1_+_266953139 Show fit	0.11	ENSRNOT00000054696	Neurl1 Links NCBI RGD Ensembl Show fit	neuralized E3 ubiquitin protein ligase 1
chr4_+_142453013 Show fit	0.11	ENSRNOT00000056573	AABR07061755.1 Links NCBI RGD Ensembl Show fit
chr12_-_47793534 Show fit	0.10	ENSRNOT00000001588	Fam222a Links NCBI RGD Ensembl Show fit	family with sequence similarity 222, member A
chr1_-_198316882 Show fit	0.09	ENSRNOT00000085304 ENSRNOT00000064985	Taok2 Links NCBI RGD Ensembl Show fit	TAO kinase 2
chr7_+_130532435 Show fit	0.08	ENSRNOT00000092672 ENSRNOT00000092535	Shank3 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 3
chr1_-_259484569 Show fit	0.08	ENSRNOT00000021289 ENSRNOT00000021114 ENSRNOT00000021229 ENSRNOT00000021347 ENSRNOT00000021226	Sorbs1 Links NCBI RGD Ensembl Show fit	sorbin and SH3 domain containing 1
chr19_+_55094585 Show fit	0.07	ENSRNOT00000068452	Zfpm1 Links NCBI RGD Ensembl Show fit	zinc finger protein, multitype 1
chr7_+_120067379 Show fit	0.06	ENSRNOT00000011270	Cdc42ep1 Links NCBI RGD Ensembl Show fit	CDC42 effector protein 1
chr15_-_28733513 Show fit	0.06	ENSRNOT00000078180	Sall2 Links NCBI RGD Ensembl Show fit	spalt-like transcription factor 2
chr4_-_156427755 Show fit	0.06	ENSRNOT00000085675 ENSRNOT00000014030	LOC103690024 Links NCBI RGD Ensembl Show fit	peroxisomal targeting signal 1 receptor-like
chr4_-_157008947 Show fit	0.06	ENSRNOT00000073341	Pex5 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 5
chr1_+_198932870 Show fit	0.06	ENSRNOT00000055003	Fbrs Links NCBI RGD Ensembl Show fit	fibrosin
chr13_-_90710148 Show fit	0.06	ENSRNOT00000010113 ENSRNOT00000080638	Kcnj9 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily J member 9
chr1_-_226924244 Show fit	0.05	ENSRNOT00000028971	Tmem132a Links NCBI RGD Ensembl Show fit	transmembrane protein 132A
chr1_-_225948626 Show fit	0.05	ENSRNOT00000077823	Incenp Links NCBI RGD Ensembl Show fit	inner centromere protein
chr1_-_226152524 Show fit	0.05	ENSRNOT00000027756	Fads2 Links NCBI RGD Ensembl Show fit	fatty acid desaturase 2
chr1_+_40529045 Show fit	0.04	ENSRNOT00000026564	Mthfd1l Links NCBI RGD Ensembl Show fit	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
chr13_+_51384562 Show fit	0.04	ENSRNOT00000077928	Kdm5b Links NCBI RGD Ensembl Show fit	lysine demethylase 5B
chr15_-_52210746 Show fit	0.04	ENSRNOT00000046054	Bmp1 Links NCBI RGD Ensembl Show fit	bone morphogenetic protein 1
chr7_-_144960527 Show fit	0.03	ENSRNOT00000086554	Zfp385a Links NCBI RGD Ensembl Show fit	zinc finger protein 385A
chr19_-_55490426 Show fit	0.03	ENSRNOT00000081800	Cbfa2t3 Links NCBI RGD Ensembl Show fit	CBFA2/RUNX1 translocation partner 3
chr7_-_14189688 Show fit	0.03	ENSRNOT00000037456	Notch3 Links NCBI RGD Ensembl Show fit	notch 3
chr16_-_74264142 Show fit	0.03	ENSRNOT00000026067	Dkk4 Links NCBI RGD Ensembl Show fit	dickkopf WNT signaling pathway inhibitor 4
chr1_-_131454689 Show fit	0.03	ENSRNOT00000014152	Nr2f2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group F, member 2
chr12_-_17358617 Show fit	0.02	ENSRNOT00000001733	Gpr146 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 146
chr13_+_35554964 Show fit	0.02	ENSRNOT00000072632	Tmem185b Links NCBI RGD Ensembl Show fit	transmembrane protein 185B
chr7_-_3074359 Show fit	0.02	ENSRNOT00000019738	Ikzf4 Links NCBI RGD Ensembl Show fit	IKAROS family zinc finger 4
chr2_-_210413985 Show fit	0.02	ENSRNOT00000025036	Strip1 Links NCBI RGD Ensembl Show fit	striatin interacting protein 1
chr3_+_56868167 Show fit	0.02	ENSRNOT00000087134	Gad1 Links NCBI RGD Ensembl Show fit	glutamate decarboxylase 1
chrX_+_140878216 Show fit	0.02	ENSRNOT00000075840 ENSRNOT00000077026	Zic3 Links NCBI RGD Ensembl Show fit	Zic family member 3
chr6_-_44361908 Show fit	0.02	ENSRNOT00000009491	Id2 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 2, HLH protein
chr9_+_53120656 Show fit	0.02	ENSRNOT00000043714	Pms1 Links NCBI RGD Ensembl Show fit	PMS1 homolog 1, mismatch repair system component
chr1_-_101856881 Show fit	0.01	ENSRNOT00000028615	Grin2d Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor NMDA type subunit 2D
chr7_-_70926903 Show fit	0.01	ENSRNOT00000031005	Lrp1 Links NCBI RGD Ensembl Show fit	LDL receptor related protein 1
chr8_+_82038967 Show fit	0.01	ENSRNOT00000079535	Myo5a Links NCBI RGD Ensembl Show fit	myosin VA
chr10_+_80790168 Show fit	0.01	ENSRNOT00000073315 ENSRNOT00000075163	Car10 Links NCBI RGD Ensembl Show fit	carbonic anhydrase 10
chr1_-_170464341 Show fit	0.01	ENSRNOT00000024850	Trim3 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 3
chr16_+_47665816 Show fit	0.01	ENSRNOT00000030519	Cdkn2aip Links NCBI RGD Ensembl Show fit	CDKN2A interacting protein
chrX_-_72515320 Show fit	0.01	ENSRNOT00000076725	Phka1 Links NCBI RGD Ensembl Show fit	phosphorylase kinase, alpha 1
chr3_-_122920684 Show fit	0.01	ENSRNOT00000028818	Cpxm1 Links NCBI RGD Ensembl Show fit	carboxypeptidase X (M14 family), member 1
chr1_-_82546937 Show fit	0.01	ENSRNOT00000028100	Hnrnpul1 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein U-like 1
chr2_-_61949926 Show fit	0.01	ENSRNOT00000025966	Npr3 Links NCBI RGD Ensembl Show fit	natriuretic peptide receptor 3
chr1_+_226091774 Show fit	0.01	ENSRNOT00000027693	Fads3 Links NCBI RGD Ensembl Show fit	fatty acid desaturase 3
chr10_-_104097812 Show fit	0.01	ENSRNOT00000004867	Sumo2 Links NCBI RGD Ensembl Show fit	small ubiquitin-like modifier 2
chr9_+_117538346 Show fit	0.01	ENSRNOT00000022849	Epb41l3 Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1-like 3
chr4_-_157009674 Show fit	0.00	ENSRNOT00000071625	Pex5 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 5
chr7_-_11444786 Show fit	0.00	ENSRNOT00000027323	Zbtb7a Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 7a
chr19_-_11057254 Show fit	0.00	ENSRNOT00000025559	Herpud1 Links NCBI RGD Ensembl Show fit	homocysteine inducible ER protein with ubiquitin like domain 1
chr5_+_138279506 Show fit	0.00	ENSRNOT00000084651	P3h1 Links NCBI RGD Ensembl Show fit	prolyl 3-hydroxylase 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0090202	mitral valve formation(GO:0003192) transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.0	0.1	GO:1901090	regulation of protein tetramerization(GO:1901090) negative regulation of protein tetramerization(GO:1901091) regulation of protein homotetramerization(GO:1901093) negative regulation of protein homotetramerization(GO:1901094)
0.0	0.1	GO:1904717	regulation of AMPA glutamate receptor clustering(GO:1904717)
0.0	0.1	GO:0016560	protein import into peroxisome matrix, docking(GO:0016560)
0.0	0.1	GO:1904008	response to monosodium glutamate(GO:1904008)
0.0	0.0	GO:0015942	formate metabolic process(GO:0015942)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005899	insulin receptor complex(GO:0005899)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005052	peroxisome matrix targeting signal-1 binding(GO:0005052)
0.0	0.0	GO:0004768	stearoyl-CoA 9-desaturase activity(GO:0004768)
0.0	0.1	GO:0030160	GKAP/Homer scaffold activity(GO:0030160)
0.0	0.1	GO:0015467	G-protein activated inward rectifier potassium channel activity(GO:0015467)