GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Zfp652 Links NCBI RGD Ensembl	ENSRNOG00000017001	zinc finger protein 652

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Zfp652	rn6_v1_chr10_+_83556809_83556809	0.87	5.6e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_-_66417741 Show fit	0.13	ENSRNOT00000007662	Neurod1 Links NCBI RGD Ensembl Show fit	neuronal differentiation 1
chr10_-_82852660 Show fit	0.09	ENSRNOT00000005641	Pdk2 Links NCBI RGD Ensembl Show fit	pyruvate dehydrogenase kinase 2
chr1_-_43638161 Show fit	0.05	ENSRNOT00000024460	Ipcef1 Links NCBI RGD Ensembl Show fit	interaction protein for cytohesin exchange factors 1
chr7_-_123088819 Show fit	0.05	ENSRNOT00000056077	AC096601.1 Links NCBI RGD Ensembl Show fit
chr6_-_42473738 Show fit	0.04	ENSRNOT00000033327	Kcnf1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel modifier subfamily F member 1
chr6_+_119519714 Show fit	0.04	ENSRNOT00000004955	Flrt2 Links NCBI RGD Ensembl Show fit	fibronectin leucine rich transmembrane protein 2
chr5_-_59638385 Show fit	0.04	ENSRNOT00000060203 ENSRNOT00000077367	Rnf38 Links NCBI RGD Ensembl Show fit	ring finger protein 38
chr5_+_79055521 Show fit	0.04	ENSRNOT00000010333	Col27a1 Links NCBI RGD Ensembl Show fit	collagen type XXVII alpha 1 chain
chr11_-_71695000 Show fit	0.04	ENSRNOT00000073550	Ubxn7 Links NCBI RGD Ensembl Show fit	UBX domain protein 7
chr16_-_79973735 Show fit	0.03	ENSRNOT00000057845 ENSRNOT00000086896	Dlgap2 Links NCBI RGD Ensembl Show fit	DLG associated protein 2
chr6_+_99625306 Show fit	0.03	ENSRNOT00000008573	Plekhg3 Links NCBI RGD Ensembl Show fit	pleckstrin homology and RhoGEF domain containing G3
chr13_+_71107465 Show fit	0.03	ENSRNOT00000003239	Rgs8 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 8
chr2_+_50099576 Show fit	0.03	ENSRNOT00000089218	Hcn1 Links NCBI RGD Ensembl Show fit	hyperpolarization-activated cyclic nucleotide-gated potassium channel 1
chr1_-_239057732 Show fit	0.03	ENSRNOT00000024775	Gda Links NCBI RGD Ensembl Show fit	guanine deaminase
chr11_+_57404196 Show fit	0.03	ENSRNOT00000042754 ENSRNOT00000034097	Phldb2 Links NCBI RGD Ensembl Show fit	pleckstrin homology-like domain, family B, member 2
chr15_-_28746042 Show fit	0.03	ENSRNOT00000017730	Sall2 Links NCBI RGD Ensembl Show fit	spalt-like transcription factor 2
chr7_-_14402010 Show fit	0.03	ENSRNOT00000008303	Wiz Links NCBI RGD Ensembl Show fit	widely-interspaced zinc finger motifs
chr4_+_7355574 Show fit	0.03	ENSRNOT00000013800	Kcnh2 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily H member 2
chr6_-_102196138 Show fit	0.03	ENSRNOT00000014132	Tmem229b Links NCBI RGD Ensembl Show fit	transmembrane protein 229B
chr3_-_117990289 Show fit	0.03	ENSRNOT00000011084	Shc4 Links NCBI RGD Ensembl Show fit	SHC adaptor protein 4
chr8_-_78655856 Show fit	0.02	ENSRNOT00000081185	Tcf12 Links NCBI RGD Ensembl Show fit	transcription factor 12
chr3_-_11452529 Show fit	0.02	ENSRNOT00000020206	Slc25a25 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 25
chr5_-_79222687 Show fit	0.02	ENSRNOT00000010516	Akna Links NCBI RGD Ensembl Show fit	AT-hook transcription factor
chr1_-_199064150 Show fit	0.02	ENSRNOT00000044511	Zfp689 Links NCBI RGD Ensembl Show fit	zinc finger protein 689
chr10_+_84955864 Show fit	0.02	ENSRNOT00000038572	Sp6 Links NCBI RGD Ensembl Show fit	Sp6 transcription factor
chr10_-_109224370 Show fit	0.02	ENSRNOT00000005839	Aatk Links NCBI RGD Ensembl Show fit	apoptosis-associated tyrosine kinase
chr5_+_58144705 Show fit	0.02	ENSRNOT00000019886	Galt Links NCBI RGD Ensembl Show fit	galactose-1-phosphate uridylyltransferase
chr20_-_7307280 Show fit	0.02	ENSRNOT00000000583 ENSRNOT00000079933	Spdef Links NCBI RGD Ensembl Show fit	SAM pointed domain containing ets transcription factor
chr7_+_78558701 Show fit	0.02	ENSRNOT00000006393	Rims2 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 2
chr8_+_22189600 Show fit	0.02	ENSRNOT00000061100	Pde4a Links NCBI RGD Ensembl Show fit	phosphodiesterase 4A
chr3_+_45277348 Show fit	0.02	ENSRNOT00000059246	Pkp4 Links NCBI RGD Ensembl Show fit	plakophilin 4
chr10_-_86645529 Show fit	0.01	ENSRNOT00000011947	Med24 Links NCBI RGD Ensembl Show fit	mediator complex subunit 24
chr1_-_84254645 Show fit	0.01	ENSRNOT00000077651	Sptbn4 Links NCBI RGD Ensembl Show fit	spectrin, beta, non-erythrocytic 4
chr6_-_51018050 Show fit	0.01	ENSRNOT00000082691	Gpr22 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 22
chr3_-_72289310 Show fit	0.01	ENSRNOT00000038250	Rtn4rl2 Links NCBI RGD Ensembl Show fit	reticulon 4 receptor-like 2
chr17_-_15467320 Show fit	0.01	ENSRNOT00000072490 ENSRNOT00000093561	Ogn Links NCBI RGD Ensembl Show fit	osteoglycin
chr11_-_14741563 Show fit	0.01	ENSRNOT00000002152	Nrip1 Links NCBI RGD Ensembl Show fit	nuclear receptor interacting protein 1
chr3_-_162581610 Show fit	0.01	ENSRNOT00000079324	Zmynd8 Links NCBI RGD Ensembl Show fit	zinc finger, MYND-type containing 8
chr5_-_152473868 Show fit	0.01	ENSRNOT00000022130	Fam110d Links NCBI RGD Ensembl Show fit	family with sequence similarity 110, member D
chr5_+_60250546 Show fit	0.01	ENSRNOT00000017707	Zcchc7 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 7
chr10_+_53466870 Show fit	0.01	ENSRNOT00000057503	Pirt Links NCBI RGD Ensembl Show fit	phosphoinositide-interacting regulator of transient receptor potential channels
chr8_+_117648745 Show fit	0.01	ENSRNOT00000027762	Slc26a6 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 6
chr15_-_58171049 Show fit	0.01	ENSRNOT00000001371	Gpalpp1 Links NCBI RGD Ensembl Show fit	GPALPP motifs containing 1
chr12_-_31249118 Show fit	0.01	ENSRNOT00000058586 ENSRNOT00000073105	Adgrd1 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor D1
chr2_-_219090874 Show fit	0.01	ENSRNOT00000019377	Vcam1 Links NCBI RGD Ensembl Show fit	vascular cell adhesion molecule 1
chr3_-_138116664 Show fit	0.01	ENSRNOT00000055602	Rrbp1 Links NCBI RGD Ensembl Show fit	ribosome binding protein 1
chr5_-_152589719 Show fit	0.01	ENSRNOT00000022522	Extl1 Links NCBI RGD Ensembl Show fit	exostosin-like glycosyltransferase 1
chr7_-_140291620 Show fit	0.01	ENSRNOT00000088323	Adcy6 Links NCBI RGD Ensembl Show fit	adenylate cyclase 6
chr7_+_2635743 Show fit	0.01	ENSRNOT00000004223	Mip Links NCBI RGD Ensembl Show fit	major intrinsic protein of lens fiber
chr10_+_56627411 Show fit	0.01	ENSRNOT00000089108 ENSRNOT00000068493	Dlg4 Links NCBI RGD Ensembl Show fit	discs large MAGUK scaffold protein 4
chr9_+_93326283 Show fit	0.01	ENSRNOT00000024578	B3gnt7 Links NCBI RGD Ensembl Show fit	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
chr1_+_157920786 Show fit	0.01	ENSRNOT00000014284	Fam181b Links NCBI RGD Ensembl Show fit	family with sequence similarity 181, member B
chr9_-_69878706 Show fit	0.01	ENSRNOT00000035879	Ino80d Links NCBI RGD Ensembl Show fit	INO80 complex subunit D
chrX_-_62690806 Show fit	0.01	ENSRNOT00000018147	Pola1 Links NCBI RGD Ensembl Show fit	DNA polymerase alpha 1, catalytic subunit
chr13_-_88436789 Show fit	0.01	ENSRNOT00000003901	Ddr2 Links NCBI RGD Ensembl Show fit	discoidin domain receptor tyrosine kinase 2
chr8_-_61823102 Show fit	0.01	ENSRNOT00000058645	Neil1 Links NCBI RGD Ensembl Show fit	nei-like DNA glycosylase 1
chr6_-_108596446 Show fit	0.01	ENSRNOT00000031331 ENSRNOT00000077458 ENSRNOT00000082792	Ltbp2 Links NCBI RGD Ensembl Show fit	latent transforming growth factor beta binding protein 2
chr13_+_60435946 Show fit	0.00	ENSRNOT00000004342	B3galt2 Links NCBI RGD Ensembl Show fit	Beta-1,3-galactosyltransferase 2
chr8_-_63350269 Show fit	0.00	ENSRNOT00000042681	Cd276 Links NCBI RGD Ensembl Show fit	Cd276 molecule
chr18_-_61057365 Show fit	0.00	ENSRNOT00000042352	Alpk2 Links NCBI RGD Ensembl Show fit	alpha-kinase 2
chr1_-_84040433 Show fit	0.00	ENSRNOT00000018696	Itpkc Links NCBI RGD Ensembl Show fit	inositol-trisphosphate 3-kinase C
chr7_-_117259141 Show fit	0.00	ENSRNOT00000040762	Plec Links NCBI RGD Ensembl Show fit	plectin
chr10_+_31146107 Show fit	0.00	ENSRNOT00000008184	Adam19 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 19
chr11_+_74834050 Show fit	0.00	ENSRNOT00000002333	Atp13a4 Links NCBI RGD Ensembl Show fit	ATPase 13A4
chr8_+_63600663 Show fit	0.00	ENSRNOT00000012644	Hcn4 Links NCBI RGD Ensembl Show fit	hyperpolarization activated cyclic nucleotide-gated potassium channel 4
chr1_+_79989019 Show fit	0.00	ENSRNOT00000020428	Dmpk Links NCBI RGD Ensembl Show fit	dystrophia myotonica-protein kinase
chr10_+_91200874 Show fit	0.00	ENSRNOT00000004272	Hexim1 Links NCBI RGD Ensembl Show fit	hexamethylene bis-acetamide inducible 1
chr15_-_60766579 Show fit	0.00	ENSRNOT00000079978	Akap11 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 11
chr1_-_271275989 Show fit	0.00	ENSRNOT00000075570	LOC100912218 Links NCBI RGD Ensembl Show fit	inositol 1,4,5-trisphosphate receptor-interacting protein-like
chr11_-_87017115 Show fit	0.00	ENSRNOT00000051037	Rtn4r Links NCBI RGD Ensembl Show fit	reticulon 4 receptor
chr2_-_207300854 Show fit	0.00	ENSRNOT00000018061	Mov10 Links NCBI RGD Ensembl Show fit	Mov10 RISC complex RNA helicase
chr17_-_14717420 Show fit	0.00	ENSRNOT00000071131	LOC100910978 Links NCBI RGD Ensembl Show fit	extracellular matrix protein 2-like
chr17_-_15555919 Show fit	0.00	ENSRNOT00000043852	Ecm2 Links NCBI RGD Ensembl Show fit	extracellular matrix protein 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0060729	intestinal epithelial structure maintenance(GO:0060729)
0.0	0.1	GO:0010510	regulation of acetyl-CoA biosynthetic process from pyruvate(GO:0010510)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005967	mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.0	0.0	GO:0098855	HCN channel complex(GO:0098855)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0004740	pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740)