GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Zkscan1 Links NCBI RGD Ensembl	ENSRNOG00000001335	zinc finger with KRAB and SCAN domains 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Zkscan1	rn6_v1_chr12_+_19231092_19231092	0.26	6.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_47987255 Show fit	1.41	ENSRNOT00000074000	Ube3b Links NCBI RGD Ensembl Show fit	ubiquitin protein ligase E3B
chr14_+_1462358 Show fit	0.31	ENSRNOT00000077243	Csf2ra Links NCBI RGD Ensembl Show fit	colony stimulating factor 2 receptor alpha subunit
chr2_-_187742747 Show fit	0.25	ENSRNOT00000026530	Bglap Links NCBI RGD Ensembl Show fit	bone gamma-carboxyglutamate protein
chr2_+_198772937 Show fit	0.18	ENSRNOT00000028812	Itga10 Links NCBI RGD Ensembl Show fit	integrin subunit alpha 10
chr7_-_119896925 Show fit	0.14	ENSRNOT00000010609	Elfn2 Links NCBI RGD Ensembl Show fit	extracellular leucine-rich repeat and fibronectin type III domain containing 2
chr10_+_71278650 Show fit	0.11	ENSRNOT00000092020	Synrg Links NCBI RGD Ensembl Show fit	synergin, gamma
chr8_+_116804451 Show fit	0.11	ENSRNOT00000041402	Ip6k1 Links NCBI RGD Ensembl Show fit	inositol hexakisphosphate kinase 1
chr2_+_22427474 Show fit	0.10	ENSRNOT00000061761	Mtx3 Links NCBI RGD Ensembl Show fit	metaxin 3
chrX_+_31140960 Show fit	0.08	ENSRNOT00000084395 ENSRNOT00000004494	Mospd2 Links NCBI RGD Ensembl Show fit	motile sperm domain containing 2
chr7_-_123638702 Show fit	0.08	ENSRNOT00000082473 ENSRNOT00000044470 ENSRNOT00000092017	Cyp2d1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily d, polypeptide 1
chr7_-_123767797 Show fit	0.08	ENSRNOT00000012699	Tcf20 Links NCBI RGD Ensembl Show fit	transcription factor 20
chr8_-_115358046 Show fit	0.08	ENSRNOT00000017607	Grm2 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 2
chr5_-_74366817 Show fit	0.07	ENSRNOT00000076705	Ptpn3 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 3
chr9_+_98668231 Show fit	0.07	ENSRNOT00000027528	Asb1 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box-containing 1
chr1_-_228755866 Show fit	0.07	ENSRNOT00000083283	Dtx4 Links NCBI RGD Ensembl Show fit	deltex E3 ubiquitin ligase 4
chr3_-_10226286 Show fit	0.07	ENSRNOT00000093627	Fubp3 Links NCBI RGD Ensembl Show fit	far upstream element binding protein 3
chr17_-_10818835 Show fit	0.07	ENSRNOT00000091046	Cplx2 Links NCBI RGD Ensembl Show fit	complexin 2
chr3_+_95715193 Show fit	0.07	ENSRNOT00000089525	Pax6 Links NCBI RGD Ensembl Show fit	paired box 6
chr4_+_57378069 Show fit	0.07	ENSRNOT00000080173 ENSRNOT00000011851	Nrf1 Links NCBI RGD Ensembl Show fit	nuclear respiratory factor 1
chr13_+_90244681 Show fit	0.06	ENSRNOT00000078162	Cd84 Links NCBI RGD Ensembl Show fit	CD84 molecule
chr7_+_13039781 Show fit	0.06	ENSRNOT00000067771 ENSRNOT00000090048	Mier2 Links NCBI RGD Ensembl Show fit	mesoderm induction early response 1, family member 2
chr12_-_52644260 Show fit	0.06	ENSRNOT00000073986	Plcxd1 Links NCBI RGD Ensembl Show fit	phosphatidylinositol-specific phospholipase C, X domain containing 1
chr1_+_203971152 Show fit	0.06	ENSRNOT00000075540	Gpr26 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 26
chr17_+_20619324 Show fit	0.06	ENSRNOT00000079788	AABR07027235.1 Links NCBI RGD Ensembl Show fit
chr17_+_70684539 Show fit	0.06	ENSRNOT00000025700	Pfkfb3 Links NCBI RGD Ensembl Show fit	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
chr1_+_85438105 Show fit	0.06	ENSRNOT00000048905	Supt5h Links NCBI RGD Ensembl Show fit	SPT5 homolog, DSIF elongation factor subunit
chr7_-_118840634 Show fit	0.06	ENSRNOT00000031568	Apol11a Links NCBI RGD Ensembl Show fit	apolipoprotein L 11a
chr19_-_55257876 Show fit	0.05	ENSRNOT00000017564	Cyba Links NCBI RGD Ensembl Show fit	cytochrome b-245 alpha chain
chr9_+_10305470 Show fit	0.05	ENSRNOT00000072592	Nrtn Links NCBI RGD Ensembl Show fit	neurturin
chr1_+_219000844 Show fit	0.05	ENSRNOT00000022486	Kmt5b Links NCBI RGD Ensembl Show fit	lysine methyltransferase 5B
chr16_+_71738718 Show fit	0.05	ENSRNOT00000022097	Plekha2 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing A2
chr7_-_141001993 Show fit	0.05	ENSRNOT00000092068	Fmnl3 Links NCBI RGD Ensembl Show fit	formin-like 3
chr16_-_6404957 Show fit	0.05	ENSRNOT00000048459	Cacna1d Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel subunit alpha1 D
chr5_-_159602251 Show fit	0.05	ENSRNOT00000011394	Necap2 Links NCBI RGD Ensembl Show fit	NECAP endocytosis associated 2
chr6_-_3254779 Show fit	0.05	ENSRNOT00000061975	Cdkl4 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase-like 4
chr14_+_113202419 Show fit	0.05	ENSRNOT00000004764	Efemp1 Links NCBI RGD Ensembl Show fit	EGF-containing fibulin-like extracellular matrix protein 1
chr5_-_137112927 Show fit	0.05	ENSRNOT00000078302	Ptprf Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, receptor type, F
chr7_-_119797098 Show fit	0.05	ENSRNOT00000009994	Rac2 Links NCBI RGD Ensembl Show fit	ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)
chr7_-_12673659 Show fit	0.05	ENSRNOT00000091650 ENSRNOT00000041277 ENSRNOT00000044865	Ptbp1 Links NCBI RGD Ensembl Show fit	polypyrimidine tract binding protein 1
chr3_-_80875817 Show fit	0.04	ENSRNOT00000091265	Dgkz Links NCBI RGD Ensembl Show fit	diacylglycerol kinase zeta
chr1_+_251145253 Show fit	0.04	ENSRNOT00000083555 ENSRNOT00000014979	Papss2 Links NCBI RGD Ensembl Show fit	3'-phosphoadenosine 5'-phosphosulfate synthase 2
chr6_+_26390689 Show fit	0.04	ENSRNOT00000079762 ENSRNOT00000091528	Ift172 Links NCBI RGD Ensembl Show fit	intraflagellar transport 172
chr6_-_126582034 Show fit	0.04	ENSRNOT00000010656 ENSRNOT00000080829	Itpk1 Links NCBI RGD Ensembl Show fit	inositol-tetrakisphosphate 1-kinase
chr3_+_100787956 Show fit	0.04	ENSRNOT00000073636	Bdnf Links NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr3_-_148312791 Show fit	0.04	ENSRNOT00000091419	Bcl2l1 Links NCBI RGD Ensembl Show fit	Bcl2-like 1
chr17_+_15966234 Show fit	0.04	ENSRNOT00000084304	Wnk2 Links NCBI RGD Ensembl Show fit	WNK lysine deficient protein kinase 2
chr5_+_151413382 Show fit	0.04	ENSRNOT00000012626	Cd164l2 Links NCBI RGD Ensembl Show fit	CD164 molecule like 2
chr10_-_65424802 Show fit	0.04	ENSRNOT00000018468	Traf4 Links NCBI RGD Ensembl Show fit	Tnf receptor associated factor 4
chr18_-_69944632 Show fit	0.04	ENSRNOT00000047271	Mapk4 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 4
chr8_-_120446455 Show fit	0.04	ENSRNOT00000085161 ENSRNOT00000042854 ENSRNOT00000037199	Arpp21 Links NCBI RGD Ensembl Show fit	cAMP regulated phosphoprotein 21
chr3_+_100787449 Show fit	0.04	ENSRNOT00000078543	Bdnf Links NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr10_+_14248399 Show fit	0.03	ENSRNOT00000077689	Spsb3 Links NCBI RGD Ensembl Show fit	splA/ryanodine receptor domain and SOCS box containing 3
chr1_+_61095171 Show fit	0.03	ENSRNOT00000042702	Vom1r19 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 19
chr10_+_46722109 Show fit	0.03	ENSRNOT00000032685	Drc3 Links NCBI RGD Ensembl Show fit	dynein regulatory complex subunit 3
chr15_-_12513931 Show fit	0.03	ENSRNOT00000010103	Atxn7 Links NCBI RGD Ensembl Show fit	ataxin 7
chr3_-_148312420 Show fit	0.03	ENSRNOT00000047416 ENSRNOT00000081272	Bcl2l1 Links NCBI RGD Ensembl Show fit	Bcl2-like 1
chr1_-_262014066 Show fit	0.03	ENSRNOT00000087083	Hps1 Links NCBI RGD Ensembl Show fit	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
chr17_+_26785029 Show fit	0.03	ENSRNOT00000022065	Eef1e1 Links NCBI RGD Ensembl Show fit	eukaryotic translation elongation factor 1 epsilon 1
chr4_-_85915099 Show fit	0.03	ENSRNOT00000016182	Neurod6 Links NCBI RGD Ensembl Show fit	neuronal differentiation 6
chr6_+_108936664 Show fit	0.03	ENSRNOT00000007298	Dlst Links NCBI RGD Ensembl Show fit	dihydrolipoamide S-succinyltransferase
chr1_-_204817080 Show fit	0.03	ENSRNOT00000077956	Fam53b Links NCBI RGD Ensembl Show fit	family with sequence similarity 53, member B
chr19_-_38484611 Show fit	0.02	ENSRNOT00000077960	Nfat5 Links NCBI RGD Ensembl Show fit	nuclear factor of activated T-cells 5
chr6_+_137184820 Show fit	0.02	ENSRNOT00000073796	Adssl1 Links NCBI RGD Ensembl Show fit	adenylosuccinate synthase like 1
chr17_-_55346279 Show fit	0.02	ENSRNOT00000025037	Svil Links NCBI RGD Ensembl Show fit	supervillin
chr13_-_82753438 Show fit	0.02	ENSRNOT00000075948	Atp1b1 Links NCBI RGD Ensembl Show fit	ATPase Na+/K+ transporting subunit beta 1
chr6_+_69971227 Show fit	0.02	ENSRNOT00000075349	Foxg1 Links NCBI RGD Ensembl Show fit	forkhead box G1
chr1_-_87147308 Show fit	0.02	ENSRNOT00000027773 ENSRNOT00000089305 ENSRNOT00000090402	Actn4 Links NCBI RGD Ensembl Show fit	actinin alpha 4
chr14_-_45165207 Show fit	0.02	ENSRNOT00000002960	Klf3 Links NCBI RGD Ensembl Show fit	Kruppel like factor 3
chr4_+_77554269 Show fit	0.02	ENSRNOT00000037248	Zfp282 Links NCBI RGD Ensembl Show fit	zinc finger protein 282
chr15_+_18399733 Show fit	0.01	ENSRNOT00000061158	Fam107a Links NCBI RGD Ensembl Show fit	family with sequence similarity 107, member A
chr7_+_18409147 Show fit	0.01	ENSRNOT00000086336 ENSRNOT00000011849	Adamts10 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 10
chr15_-_18695133 Show fit	0.01	ENSRNOT00000012271	Abhd6 Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 6
chr10_-_104718621 Show fit	0.01	ENSRNOT00000011560	Fbf1 Links NCBI RGD Ensembl Show fit	Fas binding factor 1
chrX_-_1369384 Show fit	0.01	ENSRNOT00000013745	Timp1 Links NCBI RGD Ensembl Show fit	TIMP metallopeptidase inhibitor 1
chr7_+_11545024 Show fit	0.01	ENSRNOT00000073221	Slc39a3 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 3
chr3_-_151258580 Show fit	0.01	ENSRNOT00000026120	Edem2 Links NCBI RGD Ensembl Show fit	ER degradation enhancing alpha-mannosidase like protein 2
chr11_+_82848853 Show fit	0.01	ENSRNOT00000073743	Thpo Links NCBI RGD Ensembl Show fit	thrombopoietin
chr3_+_80362858 Show fit	0.01	ENSRNOT00000021353 ENSRNOT00000086242	Lrp4 Links NCBI RGD Ensembl Show fit	LDL receptor related protein 4
chr8_-_62893087 Show fit	0.01	ENSRNOT00000058490	Ccdc33 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 33
chr6_+_111642411 Show fit	0.01	ENSRNOT00000016962	Adck1 Links NCBI RGD Ensembl Show fit	aarF domain containing kinase 1
chr2_-_219097619 Show fit	0.01	ENSRNOT00000078806	Vcam1 Links NCBI RGD Ensembl Show fit	vascular cell adhesion molecule 1
chr7_+_12798868 Show fit	0.01	ENSRNOT00000038553	Prss57 Links NCBI RGD Ensembl Show fit	protease, serine, 57
chr14_-_5378726 Show fit	0.01	ENSRNOT00000002896	Lrrc8c Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 8 family, member C
chr8_+_19888667 Show fit	0.01	ENSRNOT00000078593	Zfp317 Links NCBI RGD Ensembl Show fit	zinc finger protein 317
chr10_-_98018014 Show fit	0.01	ENSRNOT00000005367	Fam20a Links NCBI RGD Ensembl Show fit	FAM20A, golgi associated secretory pathway pseudokinase
chr6_+_136682126 Show fit	0.01	ENSRNOT00000017454	Aspg Links NCBI RGD Ensembl Show fit	asparaginase
chr5_-_153252021 Show fit	0.01	ENSRNOT00000023221	Tmem50a Links NCBI RGD Ensembl Show fit	transmembrane protein 50A
chr6_+_107999846 Show fit	0.01	ENSRNOT00000058095	Ptgr2 Links NCBI RGD Ensembl Show fit	prostaglandin reductase 2
chr8_+_67295727 Show fit	0.01	ENSRNOT00000020443	Anp32a Links NCBI RGD Ensembl Show fit	acidic nuclear phosphoprotein 32 family member A
chr1_-_219682287 Show fit	0.01	ENSRNOT00000026092	Rhod Links NCBI RGD Ensembl Show fit	ras homolog family member D
chr16_-_62373253 Show fit	0.00	ENSRNOT00000034325	Tex15 Links NCBI RGD Ensembl Show fit	testis expressed 15, meiosis and synapsis associated
chr3_+_72134731 Show fit	0.00	ENSRNOT00000083592	Ypel4 Links NCBI RGD Ensembl Show fit	yippee-like 4
chr3_-_59688692 Show fit	0.00	ENSRNOT00000078752	Sp3 Links NCBI RGD Ensembl Show fit	Sp3 transcription factor
chr5_-_128839433 Show fit	0.00	ENSRNOT00000065280	Osbpl9 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 9
chr6_-_102196138 Show fit	0.00	ENSRNOT00000014132	Tmem229b Links NCBI RGD Ensembl Show fit	transmembrane protein 229B
chr2_-_30577218 Show fit	0.00	ENSRNOT00000024674	Ocln Links NCBI RGD Ensembl Show fit	occludin
chr12_-_36587839 Show fit	0.00	ENSRNOT00000001295	Bri3bp Links NCBI RGD Ensembl Show fit	Bri3 binding protein
chr3_+_152909189 Show fit	0.00	ENSRNOT00000066341	Tgif2 Links NCBI RGD Ensembl Show fit	TGFB-induced factor homeobox 2
chr8_-_21995806 Show fit	0.00	ENSRNOT00000028034	S1pr2 Links NCBI RGD Ensembl Show fit	sphingosine-1-phosphate receptor 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0038158	granulocyte colony-stimulating factor signaling pathway(GO:0038158)
0.0	0.3	GO:0032571	response to vitamin K(GO:0032571)
0.0	0.1	GO:1905217	response to astaxanthin(GO:1905217) cellular response to astaxanthin(GO:1905218)
0.0	0.1	GO:0021918	pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.0	0.1	GO:1904844	regulation of renal output by angiotensin(GO:0002019) response to L-glutamine(GO:1904844) cellular response to L-glutamine(GO:1904845)
0.0	0.1	GO:0032701	negative regulation of interleukin-18 production(GO:0032701)
0.0	0.1	GO:0051045	negative regulation of membrane protein ectodomain proteolysis(GO:0051045)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032044	DSIF complex(GO:0032044)
0.0	0.1	GO:0070033	synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex(GO:0070033)
0.0	0.1	GO:0097136	Bcl-2 family protein complex(GO:0097136)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0051916	granulocyte colony-stimulating factor binding(GO:0051916)
0.0	0.1	GO:0052723	inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.0	0.2	GO:0098639	collagen binding involved in cell-matrix adhesion(GO:0098639)
0.0	0.1	GO:0001641	group II metabotropic glutamate receptor activity(GO:0001641)
0.0	0.1	GO:0042799	histone methyltransferase activity (H4-K20 specific)(GO:0042799)
0.0	0.0	GO:0001069	regulatory region RNA binding(GO:0001069)
0.0	0.0	GO:0004781	adenylylsulfate kinase activity(GO:0004020) sulfate adenylyltransferase activity(GO:0004779) sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.0	0.0	GO:0005006	epidermal growth factor-activated receptor activity(GO:0005006)
0.0	0.1	GO:0051434	BH3 domain binding(GO:0051434)
0.0	0.0	GO:0035373	chondroitin sulfate proteoglycan binding(GO:0035373)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	PID INTEGRIN A9B1 PATHWAY	Alpha9 beta1 integrin signaling events