ISMARA results: Ar

Project

GSE53960: rat RNA-Seq transcriptomic Bodymap

Navigation

Downloads

Results for Ar

Z-value: 0.91

Motif logo

Transcription factors associated with Ar

Gene Symbol	Gene ID	Gene Info
Ar NCBI RGD Ensembl	ENSRNOG00000005639	androgen receptor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Ar	rn6_v1_chrX_+_67656253_67656253	-0.03	6.1e-01	Click!

Activity profile of Ar motif

Sorted Z-values of Ar motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_-_138483612 Show fit	35.84	ENSRNOT00000085620	Slc38a4 NCBI RGD Ensembl Show fit	solute carrier family 38, member 4
chr15_-_5509839 Show fit	24.76	ENSRNOT00000080252 ENSRNOT00000081979 ENSRNOT00000085137 ENSRNOT00000049746	Spetex-2F NCBI RGD Ensembl Show fit	Spetex-2F protein
chr10_+_14519164 Show fit	24.30	ENSRNOT00000079543 ENSRNOT00000046884	Ccdc154 NCBI RGD Ensembl Show fit	coiled-coil domain containing 154
chr4_-_98735346 Show fit	23.76	ENSRNOT00000008473	Tex37 NCBI RGD Ensembl Show fit	testis expressed 37
chr13_+_51218468 Show fit	22.70	ENSRNOT00000033636	LOC289035 NCBI RGD Ensembl Show fit	similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco
chr10_+_103992309 Show fit	21.54	ENSRNOT00000065292	Trim80 NCBI RGD Ensembl Show fit	tripartite motif protein 80
chr6_-_127630734 Show fit	21.51	ENSRNOT00000089931	Serpina1 NCBI RGD Ensembl Show fit	serpin family A member 1
chr17_+_72160735 Show fit	21.17	ENSRNOT00000038817	Itih2 NCBI RGD Ensembl Show fit	inter-alpha-trypsin inhibitor heavy chain 2
chr10_+_4953879 Show fit	21.13	ENSRNOT00000003455	Tnp2 NCBI RGD Ensembl Show fit	transition protein 2
chr9_-_16095007 Show fit	21.10	ENSRNOT00000073333	AABR07066782.1 NCBI RGD Ensembl Show fit

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Ar

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	69.1	GO:0050911	detection of chemical stimulus involved in sensory perception of smell(GO:0050911)
1.9	35.9	GO:0031581	hemidesmosome assembly(GO:0031581)
11.0	33.0	GO:0043605	cellular amide catabolic process(GO:0043605)
0.7	22.9	GO:0030212	hyaluronan metabolic process(GO:0030212)
7.2	21.5	GO:0033986	response to methanol(GO:0033986)
0.6	21.3	GO:0006458	'de novo' protein folding(GO:0006458)
3.0	21.1	GO:0007341	penetration of zona pellucida(GO:0007341)
0.3	20.2	GO:0006096	glycolytic process(GO:0006096)
0.2	19.9	GO:0030317	sperm motility(GO:0030317)
1.3	18.7	GO:0019511	peptidyl-proline hydroxylation(GO:0019511)

Showing 1 to 10 of 178 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	38.9	GO:0072562	blood microparticle(GO:0072562)
1.7	35.9	GO:0030056	hemidesmosome(GO:0030056)
0.2	35.0	GO:0001669	acrosomal vesicle(GO:0001669)
2.3	31.9	GO:0005832	chaperonin-containing T-complex(GO:0005832)
0.2	30.6	GO:0030017	sarcomere(GO:0030017)
0.2	23.9	GO:0031514	motile cilium(GO:0031514)
0.9	21.1	GO:0001673	male germ cell nucleus(GO:0001673)
0.2	18.4	GO:0005913	cell-cell adherens junction(GO:0005913)
0.5	17.3	GO:0031430	M band(GO:0031430)
1.2	13.9	GO:0034362	low-density lipoprotein particle(GO:0034362)

Showing 1 to 10 of 71 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.7	77.6	GO:0004867	serine-type endopeptidase inhibitor activity(GO:0004867)
0.1	67.6	GO:0004984	olfactory receptor activity(GO:0004984)
0.1	53.4	GO:0008270	zinc ion binding(GO:0008270)
1.0	35.9	GO:0030506	ankyrin binding(GO:0030506)
1.1	31.9	GO:0044183	protein binding involved in protein folding(GO:0044183)
2.3	29.8	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.1	21.8	GO:0005085	guanyl-nucleotide exchange factor activity(GO:0005085)
2.9	20.2	GO:0004332	fructose-bisphosphate aldolase activity(GO:0004332)
2.3	18.7	GO:0031545	peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.1	17.7	GO:0016758	transferase activity, transferring hexosyl groups(GO:0016758)

Showing 1 to 10 of 130 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	60.1	NABA ECM REGULATORS	Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
0.4	19.9	PID HNF3A PATHWAY	FOXA1 transcription factor network
0.5	14.8	ST GA12 PATHWAY	G alpha 12 Pathway
0.2	11.3	PID ANGIOPOIETIN RECEPTOR PATHWAY	Angiopoietin receptor Tie2-mediated signaling
0.2	9.6	PID AURORA B PATHWAY	Aurora B signaling
0.2	6.1	ST MYOCYTE AD PATHWAY	Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway.
0.1	5.2	NABA BASEMENT MEMBRANES	Genes encoding structural components of basement membranes
0.1	4.3	PID EPO PATHWAY	EPO signaling pathway
0.1	4.2	PID IL23 PATHWAY	IL23-mediated signaling events
0.0	4.0	WNT SIGNALING	Genes related to Wnt-mediated signal transduction

Showing 1 to 10 of 19 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.0	31.0	REACTOME GLUTATHIONE CONJUGATION	Genes involved in Glutathione conjugation
0.9	27.4	REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS	Genes involved in Caspase-mediated cleavage of cytoskeletal proteins
0.5	18.9	REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE	Genes involved in Amino acid transport across the plasma membrane
0.2	12.3	REACTOME RESPIRATORY ELECTRON TRANSPORT	Genes involved in Respiratory electron transport
0.1	12.0	REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2	Genes involved in Response to elevated platelet cytosolic Ca2+
1.0	11.3	REACTOME CREATION OF C4 AND C2 ACTIVATORS	Genes involved in Creation of C4 and C2 activators
0.5	11.3	REACTOME TIE2 SIGNALING	Genes involved in Tie2 Signaling
1.8	11.0	REACTOME DIGESTION OF DIETARY CARBOHYDRATE	Genes involved in Digestion of dietary carbohydrate
1.0	9.3	REACTOME INITIAL TRIGGERING OF COMPLEMENT	Genes involved in Initial triggering of complement
0.3	8.4	REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX	Genes involved in Degradation of the extracellular matrix

Showing 1 to 10 of 40 entries

Results for Ar

Z-value: 0.91

Motif logo

Transcription factors associated with Ar

Activity-expression correlation:

Activity profile of Ar motif

Sorted Z-values of Ar motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Ar

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: