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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for Batf3

Z-value: 0.56

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Transcription factors associated with Batf3

Gene Symbol Gene ID Gene Info
Batf3
ENSRNOG00000003716 basic leucine zipper ATF-like transcription factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Batf3rn6_v1_chr13_+_109713489_1097134890.447.5e-17Click!

Activity profile of Batf3 motif

Sorted Z-values of Batf3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_16970626 22.03 ENSRNOT00000005383
Dusp1
dual specificity phosphatase 1
chr10_+_70884531 20.18 ENSRNOT00000015199
Ccl4
C-C motif chemokine ligand 4
chr5_+_159845774 17.57 ENSRNOT00000012328
Epha2
Eph receptor A2
chr9_-_26734763 17.05 ENSRNOT00000082814
AABR07067024.1

chr2_+_153830586 14.98 ENSRNOT00000042576
Mme
membrane metallo-endopeptidase
chr4_+_69403735 14.84 ENSRNOT00000082012
Trbv13-1
T cell receptor beta, variable 13-1
chr7_+_120580743 14.40 ENSRNOT00000017181
Maff
MAF bZIP transcription factor F
chr2_+_189629297 13.11 ENSRNOT00000049810
Dennd4b
DENN domain containing 4B
chr11_-_62451149 12.46 ENSRNOT00000093686
ENSRNOT00000081443
Zbtb20
zinc finger and BTB domain containing 20
chr1_+_177495782 12.23 ENSRNOT00000021020
Tead1
TEA domain transcription factor 1
chr2_-_66608324 11.80 ENSRNOT00000077597
Cln5
ceroid-lipofuscinosis, neuronal 5
chr17_+_10463303 11.02 ENSRNOT00000060822
Rnf44
ring finger protein 44
chr15_-_34392066 11.00 ENSRNOT00000027315
Tgm1
transglutaminase 1
chr4_-_57625147 9.48 ENSRNOT00000074649
ENSRNOT00000078961
Ube2h
ubiquitin-conjugating enzyme E2H
chrX_-_45522665 9.04 ENSRNOT00000030771
RGD1562200
similar to GS2 gene
chr12_+_13102019 8.27 ENSRNOT00000092628
Rac1
ras-related C3 botulinum toxin substrate 1
chr6_+_96171756 7.93 ENSRNOT00000029328
Slc38a6
solute carrier family 38, member 6
chr9_+_82370924 7.86 ENSRNOT00000025219
Zfand2b
zinc finger AN1-type containing 2B
chr2_-_185005572 7.41 ENSRNOT00000093291
Fam160a1
family with sequence similarity 160, member A1
chr3_+_148635775 7.36 ENSRNOT00000067261
Tm9sf4
transmembrane 9 superfamily member 4
chr4_-_6330699 7.33 ENSRNOT00000078077
ENSRNOT00000011814
Galnt11
polypeptide N-acetylgalactosaminyltransferase 11
chr10_-_88163712 7.19 ENSRNOT00000005382
ENSRNOT00000084493
Krt17
keratin 17
chr14_+_104475082 6.52 ENSRNOT00000084481
Rab1a
RAB1A, member RAS oncogene family
chr5_-_107857320 6.08 ENSRNOT00000008898
Cdkn2b
cyclin-dependent kinase inhibitor 2B
chr4_+_6330466 6.03 ENSRNOT00000089582
E130116L18Rik
RIKEN cDNA E130116L18 gene
chr7_-_9834670 5.92 ENSRNOT00000075919
ENSRNOT00000076994
LOC102549817
zinc finger protein 124-like
chr10_+_11724032 5.75 ENSRNOT00000008966
Trap1
TNF receptor-associated protein 1
chr11_-_64752544 5.57 ENSRNOT00000048738
Tmem39a
transmembrane protein 39a
chr20_+_5262120 5.15 ENSRNOT00000000535
Brd2
bromodomain containing 2
chr19_+_56272162 5.08 ENSRNOT00000030399
Afg3l1
AFG3(ATPase family gene 3)-like 1 (S. cerevisiae)
chr15_+_27739251 4.53 ENSRNOT00000011840
Parp2
poly (ADP-ribose) polymerase 2
chr7_+_10962330 4.33 ENSRNOT00000008360
Tle6
transducin-like enhancer of split 6
chr14_+_1462358 4.25 ENSRNOT00000077243
Csf2ra
colony stimulating factor 2 receptor alpha subunit
chr2_+_240396152 4.17 ENSRNOT00000034565
Cenpe
centromere protein E
chr1_-_156296161 4.04 ENSRNOT00000025653
Crebzf
CREB/ATF bZIP transcription factor
chr3_-_117389456 3.78 ENSRNOT00000007103
ENSRNOT00000081533
Myef2
myelin expression factor 2
chr12_-_2170504 3.71 ENSRNOT00000001309
Xab2
XPA binding protein 2
chr20_-_10257044 3.65 ENSRNOT00000068289
Wdr4
WD repeat domain 4
chr1_+_201256910 3.40 ENSRNOT00000090143
Tacc2
transforming, acidic coiled-coil containing protein 2
chr6_-_96171629 3.38 ENSRNOT00000010546
ENSRNOT00000078190
Trmt5
tRNA methyltransferase 5
chr8_+_114867062 3.31 ENSRNOT00000074771
Wdr82
WD repeat domain 82
chr4_-_118472179 3.09 ENSRNOT00000023856
Mxd1
max dimerization protein 1
chrX_-_158978995 3.04 ENSRNOT00000001179
Mmgt1
membrane magnesium transporter 1
chr5_+_148577332 2.46 ENSRNOT00000016325
Snrnp40
small nuclear ribonucleoprotein U5 subunit 40
chr4_-_113886994 2.45 ENSRNOT00000037333
Htra2
HtrA serine peptidase 2
chr9_-_20219209 2.34 ENSRNOT00000072086
LOC100911548
SPRY domain-containing SOCS box protein 2-like
chr3_-_120011364 2.26 ENSRNOT00000018922
Fahd2a
fumarylacetoacetate hydrolase domain containing 2A
chr1_-_259691742 2.22 ENSRNOT00000088065
Tctn3
tectonic family member 3
chr5_-_152464850 2.22 ENSRNOT00000021937
Zfp593
zinc finger protein 593
chrX_+_15064594 2.22 ENSRNOT00000007130
Tbc1d25
TBC1 domain family, member 25
chr3_-_9236736 2.16 ENSRNOT00000072628
Nup214
nucleoporin 214
chr8_+_114866768 2.06 ENSRNOT00000076731
Wdr82
WD repeat domain 82
chr8_-_128009951 2.05 ENSRNOT00000018056
Oxsr1
oxidative-stress responsive 1
chr4_+_157326727 1.87 ENSRNOT00000020493
Spsb2
splA/ryanodine receptor domain and SOCS box containing 2
chr9_+_19451630 1.77 ENSRNOT00000065048
Enpp4
ectonucleotide pyrophosphatase/phosphodiesterase 4
chr9_+_38799881 1.75 ENSRNOT00000083847
AABR07067300.1

chr1_-_259106948 1.54 ENSRNOT00000074429
LOC100912537
tectonic-3-like
chr2_-_152824547 1.07 ENSRNOT00000019824
Dhx36
DEAH-box helicase 36
chr4_+_113887115 1.03 ENSRNOT00000010602
Aup1
ancient ubiquitous protein 1
chr16_-_69195097 0.90 ENSRNOT00000018973
Erlin2
ER lipid raft associated 2
chr12_+_29921443 0.61 ENSRNOT00000001190
Sbds
SBDS ribosome assembly guanine nucleotide exchange factor
chr1_+_218466289 0.41 ENSRNOT00000017948
Mrgprf
MAS related GPR family member F
chr3_+_112371677 0.25 ENSRNOT00000013316
LOC100912076
HAUS augmin-like complex subunit 2-like

Network of associatons between targets according to the STRING database.

First level regulatory network of Batf3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
4.4 17.6 GO:1901491 notochord formation(GO:0014028) axial mesoderm morphogenesis(GO:0048319) negative regulation of lymphangiogenesis(GO:1901491)
3.7 15.0 GO:0071492 cellular response to UV-A(GO:0071492)
3.4 20.2 GO:2000503 positive regulation of natural killer cell chemotaxis(GO:2000503)
2.0 11.8 GO:1904426 positive regulation of GTP binding(GO:1904426)
2.0 7.9 GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation(GO:0006616)
1.9 5.7 GO:1901856 negative regulation of cellular respiration(GO:1901856)
1.9 13.1 GO:0032483 regulation of Rab protein signal transduction(GO:0032483)
1.7 8.3 GO:0032707 negative regulation of interleukin-23 production(GO:0032707)
1.6 22.0 GO:0090266 regulation of spindle checkpoint(GO:0090231) regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090266) regulation of mitotic spindle checkpoint(GO:1903504)
1.5 4.5 GO:0018312 peptidyl-serine ADP-ribosylation(GO:0018312)
1.5 7.3 GO:0018243 protein O-linked glycosylation via threonine(GO:0018243)
1.1 4.3 GO:0038158 granulocyte colony-stimulating factor signaling pathway(GO:0038158)
0.9 12.2 GO:0014883 transition between fast and slow fiber(GO:0014883)
0.9 3.7 GO:0036265 RNA (guanine-N7)-methylation(GO:0036265)
0.9 18.2 GO:0031424 keratinization(GO:0031424)
0.8 3.4 GO:0070900 mitochondrial tRNA modification(GO:0070900) mitochondrial RNA modification(GO:1900864)
0.8 4.2 GO:1901970 positive regulation of mitotic metaphase/anaphase transition(GO:0045842) positive regulation of attachment of spindle microtubules to kinetochore(GO:0051987) positive regulation of mitotic sister chromatid separation(GO:1901970) positive regulation of metaphase/anaphase transition of cell cycle(GO:1902101)
0.8 6.5 GO:0090110 cargo loading into COPII-coated vesicle(GO:0090110)
0.7 2.0 GO:2000687 negative regulation of rubidium ion transport(GO:2000681) negative regulation of rubidium ion transmembrane transporter activity(GO:2000687)
0.6 7.4 GO:0070863 positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.5 5.1 GO:0034982 mitochondrial protein processing(GO:0034982)
0.4 3.0 GO:0006824 cobalt ion transport(GO:0006824)
0.4 2.4 GO:1904923 regulation of mitophagy in response to mitochondrial depolarization(GO:1904923)
0.4 12.5 GO:0032728 positive regulation of interferon-beta production(GO:0032728)
0.4 6.1 GO:0060253 negative regulation of glial cell proliferation(GO:0060253)
0.4 1.1 GO:0090669 telomerase RNA stabilization(GO:0090669)
0.3 9.2 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.3 3.7 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.3 0.9 GO:0045541 negative regulation of cholesterol biosynthetic process(GO:0045541) negative regulation of cholesterol metabolic process(GO:0090206)
0.3 14.4 GO:0045604 regulation of epidermal cell differentiation(GO:0045604)
0.3 2.2 GO:1903026 negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding(GO:1903026)
0.3 5.4 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.2 9.0 GO:0019433 triglyceride catabolic process(GO:0019433)
0.2 3.4 GO:0030953 astral microtubule organization(GO:0030953)
0.2 2.2 GO:1901096 regulation of autophagosome maturation(GO:1901096)
0.1 7.9 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 1.8 GO:0006152 purine nucleoside catabolic process(GO:0006152) purine ribonucleoside catabolic process(GO:0046130)
0.1 0.6 GO:0042256 mature ribosome assembly(GO:0042256) bone marrow development(GO:0048539)
0.1 5.2 GO:0006334 nucleosome assembly(GO:0006334)
0.0 4.0 GO:0045814 negative regulation of gene expression, epigenetic(GO:0045814)
0.0 1.0 GO:0030970 retrograde protein transport, ER to cytosol(GO:0030970)
0.0 2.2 GO:0071427 mRNA export from nucleus(GO:0006406) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427)
0.0 3.8 GO:0014902 myotube differentiation(GO:0014902)
0.0 9.1 GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161)
0.0 2.2 GO:0007224 smoothened signaling pathway(GO:0007224)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
4.1 12.2 GO:0071148 TEAD-1-YAP complex(GO:0071148)
1.7 5.1 GO:0005745 m-AAA complex(GO:0005745)
0.7 3.7 GO:0043527 tRNA methyltransferase complex(GO:0043527)
0.6 8.3 GO:0060091 kinocilium(GO:0060091)
0.5 11.8 GO:0005775 vacuolar lumen(GO:0005775)
0.4 5.4 GO:0072357 PTW/PP1 phosphatase complex(GO:0072357)
0.3 1.0 GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.3 4.2 GO:0000778 condensed nuclear chromosome kinetochore(GO:0000778)
0.2 2.2 GO:0044613 nuclear pore central transport channel(GO:0044613) nuclear pore nuclear basket(GO:0044615)
0.2 2.4 GO:0035631 CD40 receptor complex(GO:0035631)
0.2 14.8 GO:0005811 lipid particle(GO:0005811)
0.1 2.5 GO:0005682 U5 snRNP(GO:0005682)
0.1 7.2 GO:0045095 keratin filament(GO:0045095)
0.1 11.0 GO:0005913 cell-cell adherens junction(GO:0005913)
0.1 15.0 GO:0005903 brush border(GO:0005903)
0.1 17.6 GO:0031256 leading edge membrane(GO:0031256)
0.1 2.2 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.1 6.5 GO:0042470 melanosome(GO:0042470) pigment granule(GO:0048770)
0.0 3.7 GO:0071013 catalytic step 2 spliceosome(GO:0071013)
0.0 2.2 GO:0005776 autophagosome(GO:0005776)
0.0 3.2 GO:0005769 early endosome(GO:0005769)
0.0 3.4 GO:0005759 mitochondrial matrix(GO:0005759)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
7.3 22.0 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
3.4 20.2 GO:0031726 CCR1 chemokine receptor binding(GO:0031726)
3.0 9.0 GO:0050253 retinyl-palmitate esterase activity(GO:0050253)
1.4 4.3 GO:0051916 granulocyte colony-stimulating factor binding(GO:0051916)
1.2 7.2 GO:0042289 MHC class II protein binding(GO:0042289)
1.1 11.0 GO:0003810 protein-glutamine gamma-glutamyltransferase activity(GO:0003810)
0.9 8.3 GO:0051022 Rho GDP-dissociation inhibitor binding(GO:0051022)
0.9 17.6 GO:0005003 ephrin receptor activity(GO:0005003)
0.8 3.0 GO:0015087 cobalt ion transmembrane transporter activity(GO:0015087)
0.7 2.2 GO:0031177 phosphopantetheine binding(GO:0031177)
0.7 3.4 GO:0009019 tRNA (guanine-N1-)-methyltransferase activity(GO:0009019)
0.7 7.3 GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity(GO:0004653)
0.6 12.2 GO:0001134 transcription factor activity, transcription factor recruiting(GO:0001134)
0.6 3.7 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.6 11.8 GO:0005537 mannose binding(GO:0005537)
0.5 4.5 GO:0003910 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.5 4.2 GO:0043515 kinetochore binding(GO:0043515)
0.4 6.1 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)
0.3 13.1 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.3 9.5 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.3 2.2 GO:0005049 nuclear export signal receptor activity(GO:0005049)
0.2 5.2 GO:0070577 lysine-acetylated histone binding(GO:0070577)
0.2 5.4 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.2 20.1 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.2 1.1 GO:0051880 G-quadruplex DNA binding(GO:0051880)
0.1 19.3 GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)
0.1 1.8 GO:0004551 nucleotide diphosphatase activity(GO:0004551)
0.1 1.0 GO:0097027 ubiquitin-protein transferase activator activity(GO:0097027)
0.1 2.2 GO:0008483 transaminase activity(GO:0008483)
0.1 7.9 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 9.1 GO:0061630 ubiquitin protein ligase activity(GO:0061630)
0.0 0.9 GO:0015485 cholesterol binding(GO:0015485)
0.0 18.4 GO:0043565 sequence-specific DNA binding(GO:0043565)
0.0 2.0 GO:0004702 receptor signaling protein serine/threonine kinase activity(GO:0004702)
0.0 5.2 GO:0045296 cadherin binding(GO:0045296)
0.0 2.4 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.6 GO:0043022 ribosome binding(GO:0043022)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 25.8 PID EPHA2 FWD PATHWAY EPHA2 forward signaling
0.6 22.0 PID P38 ALPHA BETA PATHWAY Regulation of p38-alpha and p38-beta
0.3 20.2 PID IL12 2PATHWAY IL12-mediated signaling events
0.2 10.7 PID PLK1 PATHWAY PLK1 signaling events
0.2 4.3 PID INTEGRIN A9B1 PATHWAY Alpha9 beta1 integrin signaling events
0.1 3.8 ST GA12 PATHWAY G alpha 12 Pathway
0.1 2.2 PID SMAD2 3PATHWAY Regulation of cytoplasmic and nuclear SMAD2/3 signaling
0.1 7.6 PID TELOMERASE PATHWAY Regulation of Telomerase
0.1 5.2 PID RB 1PATHWAY Regulation of retinoblastoma protein
0.1 6.1 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression
0.0 11.0 NABA ECM REGULATORS Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
0.0 1.8 PID REG GR PATHWAY Glucocorticoid receptor regulatory network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 8.3 REACTOME DSCAM INTERACTIONS Genes involved in DSCAM interactions
0.4 12.2 REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression
0.4 20.2 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.2 6.1 REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
0.1 7.3 REACTOME O LINKED GLYCOSYLATION OF MUCINS Genes involved in O-linked glycosylation of mucins
0.1 14.4 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.1 3.7 REACTOME FORMATION OF TRANSCRIPTION COUPLED NER TC NER REPAIR COMPLEX Genes involved in Formation of transcription-coupled NER (TC-NER) repair complex
0.1 4.3 REACTOME IL RECEPTOR SHC SIGNALING Genes involved in Interleukin receptor SHC signaling
0.1 2.5 REACTOME MRNA SPLICING MINOR PATHWAY Genes involved in mRNA Splicing - Minor Pathway
0.1 2.2 REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS Genes involved in Transport of Ribonucleoproteins into the Host Nucleus
0.0 9.1 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation