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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for Bsx

Z-value: 0.51

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Transcription factors associated with Bsx

Gene Symbol Gene ID Gene Info
Bsx
ENSRNOG00000024438 brain specific homeobox

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Bsxrn6_v1_chr8_+_45061670_450616700.261.6e-06Click!

Activity profile of Bsx motif

Sorted Z-values of Bsx motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_-_133959447 18.37 ENSRNOT00000011985
Cyp4x1
cytochrome P450, family 4, subfamily x, polypeptide 1
chr9_-_85243001 18.14 ENSRNOT00000020219
Scg2
secretogranin II
chr12_+_47179664 17.22 ENSRNOT00000001551
Cabp1
calcium binding protein 1
chr7_-_76488216 16.73 ENSRNOT00000080024
Ncald
neurocalcin delta
chr7_-_76294663 16.63 ENSRNOT00000064513
Ncald
neurocalcin delta
chr5_-_130085838 16.51 ENSRNOT00000035252
Elavl4
ELAV like RNA binding protein 4
chr9_+_73418607 15.83 ENSRNOT00000092547
Map2
microtubule-associated protein 2
chr8_-_82533689 15.45 ENSRNOT00000014124
Tmod2
tropomodulin 2
chr6_+_58468155 13.21 ENSRNOT00000091263
Etv1
ets variant 1
chr14_+_3882398 12.83 ENSRNOT00000033794
Hfm1
HFM1, ATP-dependent DNA helicase homolog
chr12_-_19167015 12.80 ENSRNOT00000001797
Gjc3
gap junction protein, gamma 3
chr15_+_56666012 12.59 ENSRNOT00000013408
Htr2a
5-hydroxytryptamine receptor 2A
chr15_+_11298478 11.47 ENSRNOT00000007672
Lrrc3b
leucine rich repeat containing 3B
chrX_+_6273733 11.09 ENSRNOT00000074275
Ndp
NDP, norrin cystine knot growth factor
chr19_+_6046665 10.85 ENSRNOT00000084126
Cdh8
cadherin 8
chr2_-_219262901 10.61 ENSRNOT00000037068
Gpr88
G-protein coupled receptor 88
chr1_+_48077033 10.45 ENSRNOT00000020100
Mas1
MAS1 proto-oncogene, G protein-coupled receptor
chr8_+_33239139 10.17 ENSRNOT00000011589
Arhgap32
Rho GTPase activating protein 32
chr5_+_43603043 9.82 ENSRNOT00000009899
Epha7
Eph receptor A7
chr18_-_24735349 9.81 ENSRNOT00000036537
Gpr17
G protein-coupled receptor 17
chrX_-_10031167 9.76 ENSRNOT00000060988
Gpr34
G protein-coupled receptor 34
chr8_+_82038967 9.25 ENSRNOT00000079535
Myo5a
myosin VA
chr1_-_67065797 9.12 ENSRNOT00000048152
Vom1r46
vomeronasal 1 receptor 46
chr1_+_28454966 8.55 ENSRNOT00000078841
ENSRNOT00000030327
Tpd52l1
tumor protein D52-like 1
chr17_-_87826421 8.47 ENSRNOT00000068156
Arhgap21
Rho GTPase activating protein 21
chr18_+_51523758 7.81 ENSRNOT00000078518
Gramd3
GRAM domain containing 3
chr1_+_265157379 6.67 ENSRNOT00000022426
Btrc
beta-transducin repeat containing E3 ubiquitin protein ligase
chr1_+_273854248 6.22 ENSRNOT00000044827
ENSRNOT00000017600
ENSRNOT00000086496
Add3
adducin 3
chr9_-_44419998 6.06 ENSRNOT00000091397
ENSRNOT00000083747
Tsga10
testis specific 10
chr4_-_61720956 5.97 ENSRNOT00000012879
Akr1b1
aldo-keto reductase family 1 member B
chr5_+_154800226 4.87 ENSRNOT00000016046
Htr1d
5-hydroxytryptamine receptor 1D
chr2_-_113616766 4.85 ENSRNOT00000016858
ENSRNOT00000074723
Tmem212
transmembrane protein 212
chr16_+_22979444 4.75 ENSRNOT00000017822
Csgalnact1
chondroitin sulfate N-acetylgalactosaminyltransferase 1
chr5_+_137257287 4.63 ENSRNOT00000037160
Elovl1
ELOVL fatty acid elongase 1
chr2_+_145174876 4.63 ENSRNOT00000040631
Mab21l1
mab-21 like 1
chr1_+_217345545 4.35 ENSRNOT00000071741
Shank2
SH3 and multiple ankyrin repeat domains 2
chr8_+_119524039 4.31 ENSRNOT00000056050
Epm2aip1
EPM2A interacting protein 1
chr4_+_56981283 4.20 ENSRNOT00000010989
Tspan33
tetraspanin 33
chr4_-_168656673 4.00 ENSRNOT00000009341
Gpr19
G protein-coupled receptor 19
chr11_-_90234286 3.39 ENSRNOT00000071986
Efcab1
EF hand calcium binding domain 1
chr7_-_140502441 3.27 ENSRNOT00000089544
Kmt2d
lysine methyltransferase 2D
chrX_+_9956370 3.00 ENSRNOT00000082316
LOC100910506
peripheral plasma membrane protein CASK-like
chr3_-_101547478 2.82 ENSRNOT00000006203
Fibin
fin bud initiation factor homolog (zebrafish)
chr11_-_70585053 2.80 ENSRNOT00000086955
Zfp148
zinc finger protein 148
chrX_-_84768463 2.55 ENSRNOT00000088570
Chm
CHM, Rab escort protein 1
chr4_-_67301102 2.49 ENSRNOT00000034549
Dennd2a
DENN domain containing 2A
chr18_-_69780922 2.35 ENSRNOT00000079093
Me2
malic enzyme 2
chr10_+_109107389 2.33 ENSRNOT00000068437
ENSRNOT00000005687
Baiap2
BAI1-associated protein 2
chr1_+_80279706 2.31 ENSRNOT00000047105
Ppp1r13l
protein phosphatase 1, regulatory subunit 13 like
chr4_+_87312766 2.24 ENSRNOT00000052126
Vom1r71
vomeronasal 1 receptor 71
chr2_-_149432106 2.21 ENSRNOT00000051027
P2ry13
purinergic receptor P2Y13
chr12_+_22641104 2.08 ENSRNOT00000001916
Serpine1
serpin family E member 1
chr2_-_149088787 1.99 ENSRNOT00000064833
Clrn1
clarin 1
chr2_-_227582895 1.85 ENSRNOT00000020574
Mettl14
methyltransferase like 14
chr4_+_32541706 1.81 ENSRNOT00000050827
Sdhaf3
succinate dehydrogenase complex assembly factor 3
chr8_+_70447040 1.56 ENSRNOT00000016798
Ints14
integrator complex subunit 14
chr3_+_148654668 1.55 ENSRNOT00000081370
Tm9sf4
transmembrane 9 superfamily member 4
chr10_+_44228800 1.49 ENSRNOT00000046817
Olr1431
olfactory receptor 1431
chr1_-_277902279 1.34 ENSRNOT00000078416
Ablim1
actin-binding LIM protein 1
chr1_+_213597478 1.33 ENSRNOT00000017562
Odf3
outer dense fiber of sperm tails 3
chr8_+_42663633 1.24 ENSRNOT00000048537
Olr1266
olfactory receptor 1266
chr1_-_64147251 1.18 ENSRNOT00000088502
Cnot3
CCR4-NOT transcription complex, subunit 3
chr3_-_76102782 1.18 ENSRNOT00000007690
Olr602
olfactory receptor 602
chr20_+_1172867 1.09 ENSRNOT00000041189
Olr1708
olfactory receptor 1708
chr18_-_26656879 1.01 ENSRNOT00000086729
Epb41l4a
erythrocyte membrane protein band 4.1 like 4A
chrX_-_70835089 0.93 ENSRNOT00000076351
Tex11
testis expressed 11
chr1_+_225037737 0.92 ENSRNOT00000077959
Bscl2
BSCL2, seipin lipid droplet biogenesis associated
chr13_-_89545182 0.90 ENSRNOT00000078402
Pcp4l1
Purkinje cell protein 4-like 1
chr5_+_137564607 0.83 ENSRNOT00000075742
LOC100912529
olfactory receptor 2B6-like
chr6_+_124123228 0.82 ENSRNOT00000005329
Psmc1
proteasome 26S subunit, ATPase 1
chr5_-_164648328 0.76 ENSRNOT00000090811
Zfp933
zinc finger protein 933
chr18_-_48720472 0.58 ENSRNOT00000023236
Cep120
centrosomal protein 120
chr1_-_170694872 0.58 ENSRNOT00000075443
LOC100911839
olfactory receptor 2D3-like
chr17_-_42740021 0.56 ENSRNOT00000023063
Prl3a1
Prolactin family 3, subfamily a, member 1
chr9_-_98551410 0.51 ENSRNOT00000066346
ENSRNOT00000086678
Hes6
hes family bHLH transcription factor 6
chr7_+_18068060 0.48 ENSRNOT00000065474
Vom1r107
vomeronasal 1 receptor 107
chr7_+_23854846 0.47 ENSRNOT00000037290
Bpifc
BPI fold containing family C
chr4_+_87516218 0.45 ENSRNOT00000090182
Vom1r66
vomeronasal 1 receptor 66
chr1_+_219833299 0.29 ENSRNOT00000087432
Pc
pyruvate carboxylase
chr13_+_67545430 0.27 ENSRNOT00000003405
Pdc
phosducin
chr16_+_26593370 0.20 ENSRNOT00000065453
AABR07025051.1

chr3_+_102529184 0.20 ENSRNOT00000040444
Olr752
olfactory receptor 752
chr3_+_77047466 0.14 ENSRNOT00000089424
Olr648
olfactory receptor 648
chr1_+_255579474 0.10 ENSRNOT00000024465
Btaf1
B-TFIID TATA-box binding protein associated factor 1
chr1_-_140835151 0.08 ENSRNOT00000032174
Hapln3
hyaluronan and proteoglycan link protein 3

Network of associatons between targets according to the STRING database.

First level regulatory network of Bsx

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
4.2 12.6 GO:0007208 phospholipase C-activating serotonin receptor signaling pathway(GO:0007208)
2.3 9.3 GO:0051643 endoplasmic reticulum localization(GO:0051643)
2.1 10.6 GO:0061743 motor learning(GO:0061743)
2.0 6.0 GO:0006059 hexitol metabolic process(GO:0006059)
1.9 15.4 GO:0051694 pointed-end actin filament capping(GO:0051694)
1.9 7.7 GO:0051684 maintenance of Golgi location(GO:0051684)
1.8 11.1 GO:0035426 extracellular matrix-cell signaling(GO:0035426)
1.6 9.8 GO:0051964 negative regulation of synapse assembly(GO:0051964)
1.6 4.8 GO:0019276 UDP-N-acetylgalactosamine metabolic process(GO:0019276)
1.4 17.2 GO:0010649 regulation of cell communication by electrical coupling(GO:0010649)
1.2 18.1 GO:0048245 eosinophil chemotaxis(GO:0048245)
1.1 13.2 GO:0048935 peripheral nervous system neuron differentiation(GO:0048934) peripheral nervous system neuron development(GO:0048935)
0.7 10.4 GO:0060732 positive regulation of inositol phosphate biosynthetic process(GO:0060732)
0.7 2.1 GO:1904638 response to resveratrol(GO:1904638) regulation of smooth muscle cell-matrix adhesion(GO:2000097)
0.7 4.6 GO:0034625 fatty acid elongation, monounsaturated fatty acid(GO:0034625) long-chain fatty-acyl-CoA biosynthetic process(GO:0035338)
0.7 3.3 GO:0001555 oocyte growth(GO:0001555)
0.6 4.9 GO:0014827 intestine smooth muscle contraction(GO:0014827)
0.5 9.8 GO:0002862 negative regulation of inflammatory response to antigenic stimulus(GO:0002862)
0.5 4.3 GO:2000467 positive regulation of glycogen (starch) synthase activity(GO:2000467)
0.4 7.9 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.4 15.8 GO:0007026 negative regulation of microtubule depolymerization(GO:0007026)
0.4 2.3 GO:1905232 cellular response to L-glutamate(GO:1905232)
0.4 1.8 GO:0097032 respiratory chain complex II assembly(GO:0034552) mitochondrial respiratory chain complex II assembly(GO:0034553) mitochondrial respiratory chain complex II biogenesis(GO:0097032)
0.3 4.3 GO:0099562 maintenance of postsynaptic specialization structure(GO:0098880) maintenance of postsynaptic density structure(GO:0099562)
0.3 2.5 GO:0018344 protein geranylgeranylation(GO:0018344)
0.3 31.1 GO:0003073 regulation of systemic arterial blood pressure(GO:0003073)
0.3 6.7 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.2 2.0 GO:0050957 equilibrioception(GO:0050957)
0.2 2.2 GO:0035589 G-protein coupled purinergic nucleotide receptor signaling pathway(GO:0035589)
0.2 2.3 GO:1902031 regulation of NADP metabolic process(GO:1902031)
0.2 18.4 GO:0043488 regulation of mRNA stability(GO:0043488)
0.2 10.9 GO:0009409 response to cold(GO:0009409)
0.1 2.3 GO:0003215 cardiac right ventricle morphogenesis(GO:0003215)
0.1 1.5 GO:0070863 positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.1 12.8 GO:0007605 sensory perception of sound(GO:0007605)
0.1 0.6 GO:0010825 positive regulation of centrosome duplication(GO:0010825)
0.1 0.3 GO:0019072 viral genome packaging(GO:0019072) viral RNA genome packaging(GO:0019074)
0.1 0.9 GO:0034389 lipid particle organization(GO:0034389)
0.1 8.6 GO:0046330 positive regulation of JNK cascade(GO:0046330)
0.1 2.8 GO:0021762 substantia nigra development(GO:0021762)
0.0 0.8 GO:0045899 positive regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045899)
0.0 4.0 GO:0007218 neuropeptide signaling pathway(GO:0007218)
0.0 0.3 GO:0008616 queuosine biosynthetic process(GO:0008616) queuosine metabolic process(GO:0046116)
0.0 2.5 GO:0042147 retrograde transport, endosome to Golgi(GO:0042147)
0.0 9.5 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.0 4.2 GO:0090002 establishment of protein localization to plasma membrane(GO:0090002)
0.0 7.4 GO:0030031 cell projection assembly(GO:0030031)
0.0 2.2 GO:0002244 hematopoietic progenitor cell differentiation(GO:0002244)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
3.1 9.3 GO:0042642 actomyosin, myosin complex part(GO:0042642)
1.8 15.8 GO:0097442 CA3 pyramidal cell dendrite(GO:0097442)
1.7 16.5 GO:0042788 polysomal ribosome(GO:0042788)
1.2 6.0 GO:0097454 Schwann cell microvillus(GO:0097454)
1.1 18.1 GO:0031045 dense core granule(GO:0031045)
0.8 12.6 GO:0070852 cell body fiber(GO:0070852)
0.7 10.9 GO:0043083 synaptic cleft(GO:0043083)
0.6 2.5 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.6 12.8 GO:0005922 connexon complex(GO:0005922)
0.5 4.2 GO:0097197 tetraspanin-enriched microdomain(GO:0097197)
0.3 1.9 GO:0036396 MIS complex(GO:0036396)
0.3 4.3 GO:0005883 neurofilament(GO:0005883)
0.3 3.3 GO:0044666 MLL3/4 complex(GO:0044666)
0.2 2.1 GO:0042583 chromaffin granule(GO:0042583)
0.1 7.8 GO:0005881 cytoplasmic microtubule(GO:0005881)
0.1 0.8 GO:0031595 nuclear proteasome complex(GO:0031595)
0.1 6.7 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.1 15.5 GO:0030426 growth cone(GO:0030426)
0.1 6.4 GO:0031594 neuromuscular junction(GO:0031594)
0.1 27.1 GO:0014069 postsynaptic density(GO:0014069)
0.1 1.3 GO:0001520 outer dense fiber(GO:0001520)
0.1 2.0 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.1 4.8 GO:0032580 Golgi cisterna membrane(GO:0032580)
0.0 2.3 GO:0045171 intercellular bridge(GO:0045171)
0.0 21.1 GO:0015629 actin cytoskeleton(GO:0015629)
0.0 5.0 GO:0031514 motile cilium(GO:0031514)
0.0 1.8 GO:0005758 mitochondrial intermembrane space(GO:0005758)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
4.2 12.6 GO:0071886 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding(GO:0071886)
1.6 4.8 GO:0047237 glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity(GO:0047237)
1.5 10.4 GO:0001595 angiotensin receptor activity(GO:0001595)
1.3 17.2 GO:0035256 G-protein coupled glutamate receptor binding(GO:0035256)
1.2 33.4 GO:0043014 alpha-tubulin binding(GO:0043014)
1.0 9.8 GO:0005004 GPI-linked ephrin receptor activity(GO:0005004)
0.9 15.4 GO:0005523 tropomyosin binding(GO:0005523)
0.7 15.8 GO:0002162 dystroglycan binding(GO:0002162)
0.6 18.1 GO:0042056 chemoattractant activity(GO:0042056)
0.6 1.9 GO:0016422 mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity(GO:0016422)
0.6 16.5 GO:0017091 AU-rich element binding(GO:0017091)
0.5 9.3 GO:0043008 ATP-dependent protein binding(GO:0043008)
0.5 6.0 GO:0004032 alditol:NADP+ 1-oxidoreductase activity(GO:0004032)
0.5 2.3 GO:0008093 cytoskeletal adaptor activity(GO:0008093)
0.5 4.6 GO:0009922 fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.4 18.4 GO:0070330 aromatase activity(GO:0070330)
0.4 4.9 GO:0051378 serotonin binding(GO:0051378)
0.4 2.3 GO:0004471 malic enzyme activity(GO:0004470) malate dehydrogenase (decarboxylating) (NAD+) activity(GO:0004471) malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.3 4.3 GO:0098879 structural constituent of postsynaptic specialization(GO:0098879) structural constituent of postsynaptic density(GO:0098919)
0.3 11.1 GO:0005109 frizzled binding(GO:0005109)
0.2 2.2 GO:0045028 G-protein coupled nucleotide receptor activity(GO:0001608) G-protein coupled purinergic nucleotide receptor activity(GO:0045028)
0.2 12.8 GO:0003724 RNA helicase activity(GO:0003724) ATP-dependent RNA helicase activity(GO:0004004)
0.2 2.5 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.1 0.8 GO:0036402 proteasome-activating ATPase activity(GO:0036402)
0.1 12.3 GO:0016503 pheromone receptor activity(GO:0016503)
0.1 6.2 GO:0005080 protein kinase C binding(GO:0005080)
0.1 0.3 GO:0004736 pyruvate carboxylase activity(GO:0004736)
0.1 4.7 GO:0045309 protein phosphorylated amino acid binding(GO:0045309)
0.1 10.6 GO:0003774 motor activity(GO:0003774)
0.1 18.6 GO:0005096 GTPase activator activity(GO:0005096)
0.1 2.5 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.0 13.2 GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001077)
0.0 0.3 GO:0008479 queuine tRNA-ribosyltransferase activity(GO:0008479)
0.0 2.8 GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)
0.0 2.1 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 8.6 GO:0046982 protein heterodimerization activity(GO:0046982)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 13.2 PID P38 MK2 PATHWAY p38 signaling mediated by MAPKAP kinases
0.3 15.8 PID LKB1 PATHWAY LKB1 signaling events
0.2 9.8 PID EPHA FWDPATHWAY EPHA forward signaling
0.1 10.2 PID TRKR PATHWAY Neurotrophic factor-mediated Trk receptor signaling
0.1 6.7 WNT SIGNALING Genes related to Wnt-mediated signal transduction
0.1 2.1 PID HIF2PATHWAY HIF-2-alpha transcription factor network
0.0 2.3 PID P53 REGULATION PATHWAY p53 pathway
0.0 2.3 PID RAC1 PATHWAY RAC1 signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
2.1 33.4 REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS Genes involved in Ionotropic activity of Kainate Receptors
1.2 17.5 REACTOME SEROTONIN RECEPTORS Genes involved in Serotonin receptors
1.0 12.0 REACTOME P2Y RECEPTORS Genes involved in P2Y receptors
0.4 10.9 REACTOME ADHERENS JUNCTIONS INTERACTIONS Genes involved in Adherens junctions interactions
0.4 9.3 REACTOME INSULIN SYNTHESIS AND PROCESSING Genes involved in Insulin Synthesis and Processing
0.3 4.6 REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS Genes involved in Synthesis of very long-chain fatty acyl-CoAs
0.2 4.8 REACTOME CHONDROITIN SULFATE BIOSYNTHESIS Genes involved in Chondroitin sulfate biosynthesis
0.2 8.6 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.1 6.7 REACTOME IL1 SIGNALING Genes involved in Interleukin-1 signaling
0.1 2.1 REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
0.1 1.3 REACTOME DCC MEDIATED ATTRACTIVE SIGNALING Genes involved in DCC mediated attractive signaling
0.0 1.2 REACTOME DEADENYLATION OF MRNA Genes involved in Deadenylation of mRNA
0.0 0.9 REACTOME STEROID HORMONES Genes involved in Steroid hormones
0.0 0.8 REACTOME VIF MEDIATED DEGRADATION OF APOBEC3G Genes involved in Vif-mediated degradation of APOBEC3G