GSE53960: rat RNA-Seq transcriptomic Bodymap

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hmx1 Links NCBI RGD Ensembl	ENSRNOG00000009154	H6 family homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Hmx1	rn6_v1_chr14_-_80544342_80544342	-0.39	7.1e-13	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_-_169658875 Show fit	24.23	ENSRNOT00000015840	Kcnab2 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily A regulatory beta subunit 2
chr10_-_31359699 Show fit	21.72	ENSRNOT00000081280	Cyfip2 Links NCBI RGD Ensembl Show fit	cytoplasmic FMR1 interacting protein 2
chr19_+_20607507 Show fit	19.15	ENSRNOT00000000011	Cbln1 Links NCBI RGD Ensembl Show fit	cerebellin 1 precursor
chr15_-_35113678 Show fit	16.64	ENSRNOT00000059677	Ctsg Links NCBI RGD Ensembl Show fit	cathepsin G
chr15_-_61564695 Show fit	16.15	ENSRNOT00000068216	Rgcc Links NCBI RGD Ensembl Show fit	regulator of cell cycle
chr7_-_119797098 Show fit	15.60	ENSRNOT00000009994	Rac2 Links NCBI RGD Ensembl Show fit	ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)
chr5_+_148193710 Show fit	14.96	ENSRNOT00000088568	Adgrb2 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor B2
chr6_-_92760018 Show fit	13.16	ENSRNOT00000009560	Trim9 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 9
chr8_+_33816386 Show fit	13.06	ENSRNOT00000011925	Ets1 Links NCBI RGD Ensembl Show fit	ETS proto-oncogene 1, transcription factor
chr7_-_121058029 Show fit	13.00	ENSRNOT00000068033	Cbx6 Links NCBI RGD Ensembl Show fit	chromobox 6
chr5_+_152681101 Show fit	13.00	ENSRNOT00000076052 ENSRNOT00000022574	Stmn1 Links NCBI RGD Ensembl Show fit	stathmin 1
chr5_-_77173502 Show fit	12.45	ENSRNOT00000023588	Slc46a2 Links NCBI RGD Ensembl Show fit	solute carrier family 46, member 2
chr5_+_1417478 Show fit	11.44	ENSRNOT00000008153 ENSRNOT00000085564	Jph1 Links NCBI RGD Ensembl Show fit	junctophilin 1
chr10_-_31419235 Show fit	11.08	ENSRNOT00000059496	Cyfip2 Links NCBI RGD Ensembl Show fit	cytoplasmic FMR1 interacting protein 2
chr15_-_93307420 Show fit	10.76	ENSRNOT00000012195	Slitrk1 Links NCBI RGD Ensembl Show fit	SLIT and NTRK-like family, member 1
chr7_+_133856101 Show fit	10.40	ENSRNOT00000038686	Pdzrn4 Links NCBI RGD Ensembl Show fit	PDZ domain containing RING finger 4
chr17_-_9791781 Show fit	9.88	ENSRNOT00000090536	Rgs14 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 14
chr7_-_140483693 Show fit	9.85	ENSRNOT00000089060	Ddn Links NCBI RGD Ensembl Show fit	dendrin
chr1_-_104202591 Show fit	9.46	ENSRNOT00000035512	E2f8 Links NCBI RGD Ensembl Show fit	E2F transcription factor 8
chr7_+_120140460 Show fit	9.34	ENSRNOT00000040513 ENSRNOT00000073905	Pdxp Links NCBI RGD Ensembl Show fit	pyridoxal phosphatase
chr17_+_33408722 Show fit	9.19	ENSRNOT00000023691	Gmds Links NCBI RGD Ensembl Show fit	GDP-mannose 4, 6-dehydratase
chr17_-_9792007 Show fit	9.04	ENSRNOT00000021596	Rgs14 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 14
chr13_+_31081804 Show fit	8.91	ENSRNOT00000041413	Cdh7 Links NCBI RGD Ensembl Show fit	cadherin 7
chr10_+_47281786 Show fit	8.56	ENSRNOT00000089123	Kcnj12 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily J member 12
chr2_-_187909394 Show fit	8.32	ENSRNOT00000032355	Rab25 Links NCBI RGD Ensembl Show fit	RAB25, member RAS oncogene family
chr15_-_60512704 Show fit	8.23	ENSRNOT00000049056	Tnfsf11 Links NCBI RGD Ensembl Show fit	tumor necrosis factor superfamily member 11
chr9_+_67763897 Show fit	8.14	ENSRNOT00000071226	Icos Links NCBI RGD Ensembl Show fit	inducible T-cell co-stimulator
chr14_+_75852060 Show fit	8.07	ENSRNOT00000075975	Hs3st1 Links NCBI RGD Ensembl Show fit	heparan sulfate-glucosamine 3-sulfotransferase 1
chr8_-_53899669 Show fit	8.03	ENSRNOT00000082257	Ncam1 Links NCBI RGD Ensembl Show fit	neural cell adhesion molecule 1
chr10_-_108691367 Show fit	7.62	ENSRNOT00000005067	Nptx1 Links NCBI RGD Ensembl Show fit	neuronal pentraxin 1
chr10_-_13004441 Show fit	7.49	ENSRNOT00000004848	Cldn9 Links NCBI RGD Ensembl Show fit	claudin 9
chr4_-_157252104 Show fit	7.40	ENSRNOT00000082739	Ptpn6 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 6
chr10_+_4957326 Show fit	7.35	ENSRNOT00000003458	Socs1 Links NCBI RGD Ensembl Show fit	suppressor of cytokine signaling 1
chr10_-_4910305 Show fit	7.29	ENSRNOT00000033122	Rmi2 Links NCBI RGD Ensembl Show fit	RecQ mediated genome instability 2
chr3_+_122803772 Show fit	7.12	ENSRNOT00000009564	Nop56 Links NCBI RGD Ensembl Show fit	NOP56 ribonucleoprotein
chrX_+_138046494 Show fit	7.07	ENSRNOT00000010596	Stk26 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 26
chr13_+_47602692 Show fit	6.88	ENSRNOT00000038822	Fcmr Links NCBI RGD Ensembl Show fit	Fc fragment of IgM receptor
chr20_+_5509059 Show fit	6.79	ENSRNOT00000065349	Kifc1 Links NCBI RGD Ensembl Show fit	kinesin family member C1
chr4_+_56711049 Show fit	6.70	ENSRNOT00000027237	Flnc Links NCBI RGD Ensembl Show fit	filamin C
chr9_-_46401911 Show fit	6.58	ENSRNOT00000046557	Creg2 Links NCBI RGD Ensembl Show fit	cellular repressor of E1A-stimulated genes 2
chr15_+_3938075 Show fit	6.56	ENSRNOT00000065644	Camk2g Links NCBI RGD Ensembl Show fit	calcium/calmodulin-dependent protein kinase II gamma
chr4_+_56711275 Show fit	6.52	ENSRNOT00000088149	Flnc Links NCBI RGD Ensembl Show fit	filamin C
chr13_+_52553775 Show fit	6.43	ENSRNOT00000011991	Csrp1 Links NCBI RGD Ensembl Show fit	cysteine and glycine-rich protein 1
chr1_-_89360733 Show fit	6.34	ENSRNOT00000028544	Mag Links NCBI RGD Ensembl Show fit	myelin-associated glycoprotein
chr8_+_117347029 Show fit	6.11	ENSRNOT00000047717	Impdh2 Links NCBI RGD Ensembl Show fit	inosine monophosphate dehydrogenase 2
chr10_+_3411380 Show fit	5.98	ENSRNOT00000004346	RGD1305733 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2900011O08
chr2_+_69415057 Show fit	5.96	ENSRNOT00000013152	Cdh10 Links NCBI RGD Ensembl Show fit	cadherin 10
chr12_+_41385241 Show fit	5.91	ENSRNOT00000074974	Dtx1 Links NCBI RGD Ensembl Show fit	deltex E3 ubiquitin ligase 1
chr13_+_70174936 Show fit	5.88	ENSRNOT00000064068 ENSRNOT00000079861 ENSRNOT00000092562	Arpc5 Links NCBI RGD Ensembl Show fit	actin related protein 2/3 complex, subunit 5
chr18_+_87415531 Show fit	5.83	ENSRNOT00000072475	AABR07032888.1 Links NCBI RGD Ensembl Show fit
chr2_-_25095106 Show fit	5.80	ENSRNOT00000051653 ENSRNOT00000085857	Aggf1 Links NCBI RGD Ensembl Show fit	angiogenic factor with G patch and FHA domains 1
chr10_+_90731865 Show fit	5.69	ENSRNOT00000064429	Adam11 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 11
chr3_-_141411170 Show fit	5.41	ENSRNOT00000017364	Nkx2-2 Links NCBI RGD Ensembl Show fit	NK2 homeobox 2
chr3_-_175327689 Show fit	5.30	ENSRNOT00000082981	Taf4 Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 4
chr10_+_90731148 Show fit	5.26	ENSRNOT00000093604	Adam11 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 11
chr7_+_119647375 Show fit	5.20	ENSRNOT00000046563	Kctd17 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 17
chr8_-_33017854 Show fit	5.07	ENSRNOT00000011386	Barx2 Links NCBI RGD Ensembl Show fit	BARX homeobox 2
chr1_-_2017488 Show fit	4.98	ENSRNOT00000021905	Tab2 Links NCBI RGD Ensembl Show fit	TGF-beta activated kinase 1/MAP3K7 binding protein 2
chr2_-_188553289 Show fit	4.98	ENSRNOT00000088822	Trim46 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 46
chr10_-_85574889 Show fit	4.94	ENSRNOT00000072274	LOC691153 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691153
chr2_+_211381036 Show fit	4.64	ENSRNOT00000055862	Wdr47 Links NCBI RGD Ensembl Show fit	WD repeat domain 47
chr2_+_211078334 Show fit	4.55	ENSRNOT00000049127	Sort1 Links NCBI RGD Ensembl Show fit	sortilin 1
chr7_-_70969905 Show fit	4.50	ENSRNOT00000057745	Nab2 Links NCBI RGD Ensembl Show fit	Ngfi-A binding protein 2
chr8_-_49045154 Show fit	4.39	ENSRNOT00000088034	Phldb1 Links NCBI RGD Ensembl Show fit	pleckstrin homology-like domain, family B, member 1
chr20_-_45815940 Show fit	4.38	ENSRNOT00000073276	Gpr6 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 6
chr8_-_22336794 Show fit	4.29	ENSRNOT00000066340	Ap1m2 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 1, mu 2 subunit
chr20_+_3367208 Show fit	4.29	ENSRNOT00000091149	RGD1302996 Links NCBI RGD Ensembl Show fit	hypothetical protein MGC:15854
chr3_+_110918243 Show fit	4.22	ENSRNOT00000056432	Rad51 Links NCBI RGD Ensembl Show fit	RAD51 recombinase
chr3_-_122947075 Show fit	4.22	ENSRNOT00000082369	Pced1a Links NCBI RGD Ensembl Show fit	PC-esterase domain containing 1A
chr1_+_50828585 Show fit	4.20	ENSRNOT00000086441 ENSRNOT00000023290 ENSRNOT00000035402	LOC108348175 Links NCBI RGD Ensembl Show fit	protein quaking-like
chrX_+_14498119 Show fit	4.18	ENSRNOT00000051135	Xk Links NCBI RGD Ensembl Show fit	X-linked Kx blood group
chr15_+_36809361 Show fit	4.18	ENSRNOT00000076667	Parp4 Links NCBI RGD Ensembl Show fit	poly (ADP-ribose) polymerase family, member 4
chr19_+_38039564 Show fit	4.05	ENSRNOT00000087491	Nfatc3 Links NCBI RGD Ensembl Show fit	nuclear factor of activated T-cells 3
chr7_+_145117951 Show fit	4.00	ENSRNOT00000055272	Pde1b Links NCBI RGD Ensembl Show fit	phosphodiesterase 1B
chr10_+_55275411 Show fit	3.97	ENSRNOT00000065895	Myh10 Links NCBI RGD Ensembl Show fit	myosin heavy chain 10
chr3_+_148579920 Show fit	3.85	ENSRNOT00000012432	Hck Links NCBI RGD Ensembl Show fit	HCK proto-oncogene, Src family tyrosine kinase
chr10_-_47724499 Show fit	3.82	ENSRNOT00000085011	Rnf112 Links NCBI RGD Ensembl Show fit	ring finger protein 112
chr20_+_12429315 Show fit	3.79	ENSRNOT00000001675	Pcbp3 Links NCBI RGD Ensembl Show fit	poly(rC) binding protein 3
chr1_-_67390141 Show fit	3.78	ENSRNOT00000025808	Sbk1 Links NCBI RGD Ensembl Show fit	SH3 domain binding kinase 1
chr10_+_48240330 Show fit	3.73	ENSRNOT00000057798	Specc1 Links NCBI RGD Ensembl Show fit	sperm antigen with calponin homology and coiled-coil domains 1
chrX_+_37469937 Show fit	3.72	ENSRNOT00000008938	Rps6ka3 Links NCBI RGD Ensembl Show fit	ribosomal protein S6 kinase A3
chrX_+_156463953 Show fit	3.61	ENSRNOT00000079889	Flna Links NCBI RGD Ensembl Show fit	filamin A
chr1_+_50828134 Show fit	3.60	ENSRNOT00000089149	LOC108348175 Links NCBI RGD Ensembl Show fit	protein quaking-like
chrX_+_14498283 Show fit	3.55	ENSRNOT00000092143	Xk Links NCBI RGD Ensembl Show fit	X-linked Kx blood group
chr5_-_150439959 Show fit	3.55	ENSRNOT00000014506	Gmeb1 Links NCBI RGD Ensembl Show fit	glucocorticoid modulatory element binding protein 1
chr18_+_31094965 Show fit	3.45	ENSRNOT00000026526	Rell2 Links NCBI RGD Ensembl Show fit	RELT-like 2
chr8_+_114866768 Show fit	3.23	ENSRNOT00000076731	Wdr82 Links NCBI RGD Ensembl Show fit	WD repeat domain 82
chr7_+_120380544 Show fit	3.19	ENSRNOT00000015009	Polr2f Links NCBI RGD Ensembl Show fit	RNA polymerase II subunit F
chr11_-_86303453 Show fit	3.17	ENSRNOT00000071453	LOC498122 Links NCBI RGD Ensembl Show fit	similar to CG15908-PA
chr6_+_137184820 Show fit	3.15	ENSRNOT00000073796	Adssl1 Links NCBI RGD Ensembl Show fit	adenylosuccinate synthase like 1
chr12_+_13090172 Show fit	3.09	ENSRNOT00000092558	Rac1 Links NCBI RGD Ensembl Show fit	ras-related C3 botulinum toxin substrate 1
chr1_-_165680176 Show fit	3.09	ENSRNOT00000025245 ENSRNOT00000082697	Plekhb1 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing B1
chr19_+_37252843 Show fit	3.09	ENSRNOT00000021145	E2f4 Links NCBI RGD Ensembl Show fit	E2F transcription factor 4
chr8_+_103774358 Show fit	3.05	ENSRNOT00000014481	Xrn1 Links NCBI RGD Ensembl Show fit	5'-3' exoribonuclease 1
chr12_+_13090367 Show fit	3.01	ENSRNOT00000001417	Rac1 Links NCBI RGD Ensembl Show fit	ras-related C3 botulinum toxin substrate 1
chr8_+_114867062 Show fit	2.96	ENSRNOT00000074771	Wdr82 Links NCBI RGD Ensembl Show fit	WD repeat domain 82
chr17_+_26785029 Show fit	2.93	ENSRNOT00000022065	Eef1e1 Links NCBI RGD Ensembl Show fit	eukaryotic translation elongation factor 1 epsilon 1
chr5_-_113532878 Show fit	2.88	ENSRNOT00000010173	Caap1 Links NCBI RGD Ensembl Show fit	caspase activity and apoptosis inhibitor 1
chr4_+_61912210 Show fit	2.85	ENSRNOT00000013569	Bpgm Links NCBI RGD Ensembl Show fit	bisphosphoglycerate mutase
chr4_+_58053041 Show fit	2.85	ENSRNOT00000072698	Mest Links NCBI RGD Ensembl Show fit	mesoderm specific transcript
chr3_+_11921715 Show fit	2.82	ENSRNOT00000021689	Fam129b Links NCBI RGD Ensembl Show fit	family with sequence similarity 129, member B
chr10_+_104523996 Show fit	2.68	ENSRNOT00000065339 ENSRNOT00000086747	Itgb4 Links NCBI RGD Ensembl Show fit	integrin subunit beta 4
chr8_+_19888667 Show fit	2.65	ENSRNOT00000078593	Zfp317 Links NCBI RGD Ensembl Show fit	zinc finger protein 317
chr6_-_26792808 Show fit	2.63	ENSRNOT00000010403	Abhd1 Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 1
chr18_+_29999290 Show fit	2.56	ENSRNOT00000027372	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr1_-_190370499 Show fit	2.45	ENSRNOT00000084389	AABR07005618.1 Links NCBI RGD Ensembl Show fit
chr1_-_231530690 Show fit	2.31	ENSRNOT00000087140 ENSRNOT00000018452 ENSRNOT00000018272	Tle4 Links NCBI RGD Ensembl Show fit	transducin-like enhancer of split 4
chr1_-_261446570 Show fit	2.27	ENSRNOT00000020182	Sfrp5 Links NCBI RGD Ensembl Show fit	secreted frizzled-related protein 5
chr12_+_17735740 Show fit	2.21	ENSRNOT00000001775	Pdgfa Links NCBI RGD Ensembl Show fit	platelet derived growth factor subunit A
chr5_-_109621170 Show fit	2.19	ENSRNOT00000093007	Elavl2 Links NCBI RGD Ensembl Show fit	ELAV like RNA binding protein 2
chr20_+_4357733 Show fit	2.19	ENSRNOT00000000509	Pbx2 Links NCBI RGD Ensembl Show fit	PBX homeobox 2
chr10_-_90265017 Show fit	2.02	ENSRNOT00000064283 ENSRNOT00000048418	Ubtf Links NCBI RGD Ensembl Show fit	upstream binding transcription factor, RNA polymerase I
chr7_+_11737293 Show fit	1.96	ENSRNOT00000046059	Lingo3 Links NCBI RGD Ensembl Show fit	leucine rich repeat and Ig domain containing 3
chr13_+_57131395 Show fit	1.96	ENSRNOT00000017884	Kcnt2 Links NCBI RGD Ensembl Show fit	potassium sodium-activated channel subfamily T member 2
chr7_-_140454268 Show fit	1.94	ENSRNOT00000081468	Wnt10b Links NCBI RGD Ensembl Show fit	wingless-type MMTV integration site family, member 10B
chr1_-_262013619 Show fit	1.78	ENSRNOT00000021278	Hps1 Links NCBI RGD Ensembl Show fit	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
chr5_+_135074297 Show fit	1.74	ENSRNOT00000000157	Pik3r3 Links NCBI RGD Ensembl Show fit	phosphoinositide-3-kinase regulatory subunit 3
chr3_+_2490518 Show fit	1.61	ENSRNOT00000015099	Anapc2 Links NCBI RGD Ensembl Show fit	anaphase promoting complex subunit 2
chr1_+_221409271 Show fit	1.58	ENSRNOT00000028462	Syvn1 Links NCBI RGD Ensembl Show fit	synoviolin 1
chr4_+_130172727 Show fit	1.49	ENSRNOT00000051121	Mitf Links NCBI RGD Ensembl Show fit	melanogenesis associated transcription factor
chr15_-_35394792 Show fit	1.48	ENSRNOT00000028058	Gzmc Links NCBI RGD Ensembl Show fit	granzyme C
chr1_-_261229046 Show fit	1.48	ENSRNOT00000075531	Mms19 Links NCBI RGD Ensembl Show fit	MMS19 homolog, cytosolic iron-sulfur assembly component
chr4_+_157374318 Show fit	1.48	ENSRNOT00000071027	AC115420.2 Links NCBI RGD Ensembl Show fit
chr4_+_140703619 Show fit	1.36	ENSRNOT00000009563	Bhlhe40 Links NCBI RGD Ensembl Show fit	basic helix-loop-helix family, member e40
chr5_+_48374096 Show fit	1.34	ENSRNOT00000010172	Gabrr1 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor rho 1 subunit
chr18_+_30004565 Show fit	1.33	ENSRNOT00000027393	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr5_+_149077412 Show fit	1.16	ENSRNOT00000014666	Matn1 Links NCBI RGD Ensembl Show fit	matrilin 1, cartilage matrix protein
chr8_+_67295727 Show fit	1.06	ENSRNOT00000020443	Anp32a Links NCBI RGD Ensembl Show fit	acidic nuclear phosphoprotein 32 family member A
chr2_-_197935567 Show fit	1.03	ENSRNOT00000085404	Rprd2 Links NCBI RGD Ensembl Show fit	regulation of nuclear pre-mRNA domain containing 2
chr14_-_12387102 Show fit	1.02	ENSRNOT00000038872	Bmp3 Links NCBI RGD Ensembl Show fit	bone morphogenetic protein 3
chr16_-_3912148 Show fit	0.93	ENSRNOT00000014941	Anxa11 Links NCBI RGD Ensembl Show fit	annexin A11
chr15_+_93634820 Show fit	0.82	ENSRNOT00000093318	Cln5 Links NCBI RGD Ensembl Show fit	ceroid-lipofuscinosis, neuronal 5
chr1_-_59732409 Show fit	0.78	ENSRNOT00000014824	Has1 Links NCBI RGD Ensembl Show fit	hyaluronan synthase 1
chr8_-_39437270 Show fit	0.77	ENSRNOT00000076158	Pknox2 Links NCBI RGD Ensembl Show fit	PBX/knotted 1 homeobox 2
chr6_+_10533151 Show fit	0.77	ENSRNOT00000020822	Rhoq Links NCBI RGD Ensembl Show fit	ras homolog family member Q
chr10_+_43224269 Show fit	0.76	ENSRNOT00000003473	Sap30l Links NCBI RGD Ensembl Show fit	SAP30-like
chr10_-_109802739 Show fit	0.76	ENSRNOT00000054951	Sirt7 Links NCBI RGD Ensembl Show fit	sirtuin 7
chr4_+_171730635 Show fit	0.75	ENSRNOT00000009923	Strap Links NCBI RGD Ensembl Show fit	serine/threonine kinase receptor associated protein
chr10_+_103874383 Show fit	0.75	ENSRNOT00000038935	Otop2 Links NCBI RGD Ensembl Show fit	otopetrin 2
chr9_+_94324793 Show fit	0.70	ENSRNOT00000092493	Eif4e2 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4E family member 2
chr15_+_33333420 Show fit	0.66	ENSRNOT00000049927	RGD1308430 Links NCBI RGD Ensembl Show fit	similar to 1700123O20Rik protein
chr3_-_171134655 Show fit	0.60	ENSRNOT00000028960	RGD1561252 Links NCBI RGD Ensembl Show fit	similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (Ubiquitin thiolesterase L3)
chr20_-_12128747 Show fit	0.52	ENSRNOT00000001644	Pofut2 Links NCBI RGD Ensembl Show fit	protein O-fucosyltransferase 2
chr7_-_3123297 Show fit	0.46	ENSRNOT00000061878	Rab5b Links NCBI RGD Ensembl Show fit	RAB5B, member RAS oncogene family
chr18_+_29993361 Show fit	0.46	ENSRNOT00000075810	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr2_-_143931940 Show fit	0.38	ENSRNOT00000086214	Exosc8 Links NCBI RGD Ensembl Show fit	exosome component 8
chr2_+_57206613 Show fit	0.34	ENSRNOT00000082694 ENSRNOT00000046069	Nup155 Links NCBI RGD Ensembl Show fit	nucleoporin 155
chr12_-_17519954 Show fit	0.33	ENSRNOT00000089418	Sun1 Links NCBI RGD Ensembl Show fit	Sad1 and UNC84 domain containing 1
chr19_+_24044103 Show fit	0.32	ENSRNOT00000004621	Rnf150 Links NCBI RGD Ensembl Show fit	ring finger protein 150
chr12_-_11808977 Show fit	0.30	ENSRNOT00000071795	AABR07035375.1 Links NCBI RGD Ensembl Show fit
chr17_+_18151982 Show fit	0.24	ENSRNOT00000066447	Kif13a Links NCBI RGD Ensembl Show fit	kinesin family member 13A
chr15_+_86153628 Show fit	0.20	ENSRNOT00000012842	Uchl3 Links NCBI RGD Ensembl Show fit	ubiquitin C-terminal hydrolase L3
chr8_-_118182559 Show fit	0.18	ENSRNOT00000084838	Dhx30 Links NCBI RGD Ensembl Show fit	DExH-box helicase 30
chr3_-_176926722 Show fit	0.18	ENSRNOT00000020168	Zbtb46 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 46
chr13_+_52147555 Show fit	0.16	ENSRNOT00000084766	Lmod1 Links NCBI RGD Ensembl Show fit	leiomodin 1
chr15_-_36472327 Show fit	0.14	ENSRNOT00000032601 ENSRNOT00000059660	LOC102553861 Links NCBI RGD Ensembl Show fit	granzyme-like protein 1-like
chr4_-_159697207 Show fit	0.09	ENSRNOT00000086440	Ccnd2 Links NCBI RGD Ensembl Show fit	cyclin D2
chr1_-_262014066 Show fit	0.04	ENSRNOT00000087083	Hps1 Links NCBI RGD Ensembl Show fit	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
chr15_-_35417273 Show fit	0.03	ENSRNOT00000083961 ENSRNOT00000041430	Gzmb Links NCBI RGD Ensembl Show fit	granzyme B

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
6.3	18.9	GO:0010070	zygote asymmetric cell division(GO:0010070)
5.5	16.6	GO:0070946	neutrophil mediated killing of gram-positive bacterium(GO:0070946)
5.4	16.2	GO:0003330	regulation of extracellular matrix constituent secretion(GO:0003330) positive regulation of extracellular matrix constituent secretion(GO:0003331)
4.4	13.2	GO:0035544	negative regulation of SNARE complex assembly(GO:0035544)
4.1	32.8	GO:0051388	positive regulation of neurotrophin TRK receptor signaling pathway(GO:0051388)
3.3	13.1	GO:0030578	PML body organization(GO:0030578)
3.2	13.0	GO:0070495	regulation of thrombin receptor signaling pathway(GO:0070494) negative regulation of thrombin receptor signaling pathway(GO:0070495)
3.1	9.3	GO:0042822	pyridoxal phosphate metabolic process(GO:0042822)
3.1	9.2	GO:0042350	GDP-L-fucose biosynthetic process(GO:0042350)
2.7	8.0	GO:0001928	regulation of exocyst assembly(GO:0001928)
2.4	24.2	GO:0070995	NADPH oxidation(GO:0070995)
2.3	4.5	GO:0016480	negative regulation of transcription from RNA polymerase III promoter(GO:0016480)
2.1	8.2	GO:0043397	corticotropin-releasing hormone secretion(GO:0043396) regulation of corticotropin-releasing hormone secretion(GO:0043397) TNFSF11-mediated signaling pathway(GO:0071847) positive regulation of osteoclast development(GO:2001206)
1.8	7.4	GO:0033277	abortive mitotic cell cycle(GO:0033277)
1.8	5.4	GO:0021530	spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530)
1.6	9.5	GO:0060718	chorionic trophoblast cell differentiation(GO:0060718)
1.5	6.0	GO:1903976	negative regulation of glial cell migration(GO:1903976)
1.4	19.2	GO:0021684	cerebellar granular layer formation(GO:0021684) cerebellar granule cell differentiation(GO:0021707)
1.4	21.7	GO:0060263	regulation of respiratory burst(GO:0060263)
1.3	4.0	GO:0021678	third ventricle development(GO:0021678)
1.3	7.7	GO:0010961	cellular magnesium ion homeostasis(GO:0010961) regulation of axon diameter(GO:0031133)
1.2	6.1	GO:0006177	GMP biosynthetic process(GO:0006177)
1.1	4.2	GO:0051106	regulation of DNA ligation(GO:0051105) positive regulation of DNA ligation(GO:0051106)
1.1	3.2	GO:0044208	'de novo' AMP biosynthetic process(GO:0044208)
0.9	4.5	GO:0051005	negative regulation of lipoprotein lipase activity(GO:0051005)
0.8	2.3	GO:0044333	Wnt signaling pathway involved in digestive tract morphogenesis(GO:0044333) regulation of planar cell polarity pathway involved in axis elongation(GO:2000040) negative regulation of planar cell polarity pathway involved in axis elongation(GO:2000041)
0.7	2.2	GO:0060683	regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling(GO:0060683) embryonic lung development(GO:1990401)
0.7	3.6	GO:1905031	regulation of membrane repolarization during cardiac muscle cell action potential(GO:1905031)
0.7	7.6	GO:0060385	axonogenesis involved in innervation(GO:0060385)
0.7	2.0	GO:1902659	regulation of glucose mediated signaling pathway(GO:1902659)
0.7	5.9	GO:0021769	orbitofrontal cortex development(GO:0021769)
0.6	1.9	GO:0051884	myoblast differentiation involved in skeletal muscle regeneration(GO:0014835) anagen(GO:0042640) regulation of anagen(GO:0051884)
0.6	6.9	GO:1990001	inhibition of cysteine-type endopeptidase activity involved in apoptotic process(GO:1990001)
0.6	7.3	GO:0060334	regulation of interferon-gamma-mediated signaling pathway(GO:0060334)
0.6	7.8	GO:0061158	3'-UTR-mediated mRNA destabilization(GO:0061158)
0.5	6.6	GO:1901897	regulation of relaxation of cardiac muscle(GO:1901897)
0.4	8.1	GO:0002517	T cell tolerance induction(GO:0002517)
0.4	8.3	GO:0031268	pseudopodium organization(GO:0031268)
0.4	0.8	GO:1904426	positive regulation of GTP binding(GO:1904426)
0.4	2.9	GO:0043456	regulation of pentose-phosphate shunt(GO:0043456)
0.4	12.4	GO:0070233	negative regulation of T cell apoptotic process(GO:0070233)
0.4	4.0	GO:0036005	response to macrophage colony-stimulating factor(GO:0036005) cellular response to macrophage colony-stimulating factor stimulus(GO:0036006)
0.4	6.3	GO:0048711	positive regulation of astrocyte differentiation(GO:0048711)
0.4	3.1	GO:0071409	cellular response to cycloheximide(GO:0071409)
0.4	1.5	GO:0044336	canonical Wnt signaling pathway involved in negative regulation of apoptotic process(GO:0044336)
0.3	4.4	GO:2001197	regulation of basement membrane assembly involved in embryonic body morphogenesis(GO:1904259) positive regulation of basement membrane assembly involved in embryonic body morphogenesis(GO:1904261) basement membrane assembly involved in embryonic body morphogenesis(GO:2001197)
0.3	5.0	GO:0099612	protein localization to axon(GO:0099612)
0.3	6.2	GO:0080182	histone H3-K4 trimethylation(GO:0080182)
0.3	2.7	GO:0061450	nail development(GO:0035878) trophoblast cell migration(GO:0061450)
0.3	2.9	GO:2000774	positive regulation of cellular senescence(GO:2000774)
0.3	4.4	GO:0003376	sphingosine-1-phosphate signaling pathway(GO:0003376)
0.3	8.6	GO:0010107	potassium ion import(GO:0010107)
0.3	7.1	GO:0000154	rRNA modification(GO:0000154)
0.3	4.1	GO:2001256	regulation of store-operated calcium entry(GO:2001256)
0.2	20.5	GO:0051965	positive regulation of synapse assembly(GO:0051965)
0.2	1.8	GO:1903232	melanosome assembly(GO:1903232)
0.2	5.1	GO:0001502	cartilage condensation(GO:0001502)
0.2	3.1	GO:0000083	regulation of transcription involved in G1/S transition of mitotic cell cycle(GO:0000083)
0.2	3.9	GO:2000251	positive regulation of actin cytoskeleton reorganization(GO:2000251)
0.2	5.2	GO:0032469	endoplasmic reticulum calcium ion homeostasis(GO:0032469)
0.2	7.1	GO:0030033	microvillus assembly(GO:0030033)
0.2	13.2	GO:0048747	muscle fiber development(GO:0048747)
0.2	0.8	GO:0046379	extracellular polysaccharide biosynthetic process(GO:0045226) extracellular polysaccharide metabolic process(GO:0046379)
0.2	1.2	GO:0003418	growth plate cartilage chondrocyte differentiation(GO:0003418)
0.2	5.9	GO:0045581	negative regulation of T cell differentiation(GO:0045581)
0.2	6.8	GO:0007080	mitotic metaphase plate congression(GO:0007080)
0.2	0.5	GO:0036066	protein O-linked fucosylation(GO:0036066)
0.2	1.6	GO:0090129	positive regulation of synapse maturation(GO:0090129)
0.1	5.3	GO:0051123	RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123)
0.1	3.8	GO:0045687	positive regulation of glial cell differentiation(GO:0045687)
0.1	19.2	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156)
0.1	11.0	GO:0007229	integrin-mediated signaling pathway(GO:0007229)
0.1	7.3	GO:0033045	regulation of sister chromatid segregation(GO:0033045)
0.1	2.8	GO:0032274	gonadotropin secretion(GO:0032274)
0.1	6.4	GO:0070527	platelet aggregation(GO:0070527)
0.1	0.3	GO:0030473	modulation of microtubule cytoskeleton involved in cerebral cortex radial glia guided migration(GO:0021815) nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration(GO:0021817) nuclear migration along microtubule(GO:0030473) nuclear matrix organization(GO:0043578) nuclear matrix anchoring at nuclear membrane(GO:0090292)
0.1	1.7	GO:2001275	positive regulation of glucose import in response to insulin stimulus(GO:2001275)
0.1	1.6	GO:1902236	negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway(GO:1902236)
0.1	3.2	GO:0006383	transcription from RNA polymerase III promoter(GO:0006383)
0.1	0.8	GO:0070933	histone H4 deacetylation(GO:0070933)
0.1	0.5	GO:0048227	plasma membrane to endosome transport(GO:0048227)
0.1	4.2	GO:0006278	RNA-dependent DNA biosynthetic process(GO:0006278) telomere maintenance via telomerase(GO:0007004)
0.1	2.9	GO:0010883	regulation of lipid storage(GO:0010883)
0.1	0.3	GO:0090435	protein localization to nuclear envelope(GO:0090435)
0.1	1.5	GO:0031163	iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.1	1.1	GO:0035067	negative regulation of histone acetylation(GO:0035067)
0.1	2.2	GO:0009954	proximal/distal pattern formation(GO:0009954)
0.1	0.7	GO:0030277	maintenance of gastrointestinal epithelium(GO:0030277)
0.1	0.9	GO:0032506	cytokinetic process(GO:0032506)
0.1	1.4	GO:0043153	entrainment of circadian clock by photoperiod(GO:0043153)
0.0	0.8	GO:0030866	cortical actin cytoskeleton organization(GO:0030866)
0.0	0.2	GO:0072383	plus-end-directed vesicle transport along microtubule(GO:0072383) plus-end-directed organelle transport along microtubule(GO:0072386)
0.0	0.2	GO:1902775	mitochondrial large ribosomal subunit assembly(GO:1902775)
0.0	0.2	GO:2001199	negative regulation of dendritic cell differentiation(GO:2001199)
0.0	7.5	GO:0045216	cell-cell junction organization(GO:0045216)
0.0	5.0	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling(GO:0043123)
0.0	0.2	GO:0051694	pointed-end actin filament capping(GO:0051694)
0.0	1.4	GO:0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process(GO:0043154)
0.0	1.0	GO:0060395	SMAD protein signal transduction(GO:0060395)
0.0	3.5	GO:0018105	peptidyl-serine phosphorylation(GO:0018105)
0.0	0.0	GO:0060545	positive regulation of necroptotic process(GO:0060545)
0.0	0.8	GO:0016575	histone deacetylation(GO:0016575)
0.0	1.3	GO:1902476	chloride transmembrane transport(GO:1902476)
0.0	2.0	GO:0071805	cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.8	11.4	GO:0014701	junctional sarcoplasmic reticulum membrane(GO:0014701)
2.1	6.3	GO:0097453	mesaxon(GO:0097453) ensheathing process(GO:1990015)
1.5	24.2	GO:0044224	juxtaparanode region of axon(GO:0044224)
1.0	7.1	GO:0070761	pre-snoRNP complex(GO:0070761)
1.0	5.0	GO:1990769	proximal neuron projection(GO:1990769)
1.0	4.0	GO:0097513	myosin II filament(GO:0097513)
0.9	7.4	GO:0042105	alpha-beta T cell receptor complex(GO:0042105)
0.7	8.1	GO:0005796	Golgi lumen(GO:0005796)
0.7	9.3	GO:0031258	lamellipodium membrane(GO:0031258)
0.7	9.9	GO:0032591	dendritic spine membrane(GO:0032591)
0.6	8.3	GO:0031143	pseudopodium(GO:0031143)
0.5	1.6	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.5	6.2	GO:0072357	PTW/PP1 phosphatase complex(GO:0072357)
0.5	5.9	GO:0005885	Arp2/3 protein complex(GO:0005885)
0.4	5.3	GO:0033276	transcription factor TFTC complex(GO:0033276)
0.4	1.8	GO:0031085	BLOC-3 complex(GO:0031085)
0.3	16.6	GO:0010494	cytoplasmic stress granule(GO:0010494)
0.3	13.2	GO:0043034	costamere(GO:0043034)
0.3	1.5	GO:0097361	CIA complex(GO:0097361)
0.3	4.4	GO:0045180	basal cortex(GO:0045180)
0.3	2.7	GO:0030056	hemidesmosome(GO:0030056)
0.3	3.2	GO:0005736	DNA-directed RNA polymerase I complex(GO:0005736)
0.2	6.1	GO:0000242	pericentriolar material(GO:0000242)
0.2	2.9	GO:0017101	aminoacyl-tRNA synthetase multienzyme complex(GO:0017101)
0.2	23.1	GO:0016605	PML body(GO:0016605)
0.2	6.6	GO:0033017	sarcoplasmic reticulum membrane(GO:0033017)
0.2	22.5	GO:0005884	actin filament(GO:0005884)
0.2	8.6	GO:0031519	PcG protein complex(GO:0031519)
0.2	4.3	GO:0030131	clathrin adaptor complex(GO:0030131)
0.1	11.5	GO:0005798	Golgi-associated vesicle(GO:0005798)
0.1	8.6	GO:0030315	T-tubule(GO:0030315)
0.1	0.3	GO:0044611	nuclear pore inner ring(GO:0044611)
0.1	7.0	GO:0005871	kinesin complex(GO:0005871)
0.1	10.4	GO:0000932	cytoplasmic mRNA processing body(GO:0000932)
0.1	5.2	GO:0031463	Cul3-RING ubiquitin ligase complex(GO:0031463)
0.1	1.6	GO:0005680	anaphase-promoting complex(GO:0005680)
0.1	5.8	GO:0005778	peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.1	20.5	GO:0045211	postsynaptic membrane(GO:0045211)
0.1	4.2	GO:0005876	spindle microtubule(GO:0005876)
0.1	30.5	GO:0005667	transcription factor complex(GO:0005667)
0.1	1.7	GO:0005942	phosphatidylinositol 3-kinase complex(GO:0005942)
0.1	0.7	GO:0032797	SMN complex(GO:0032797)
0.1	0.9	GO:0042582	primary lysosome(GO:0005766) azurophil granule(GO:0042582)
0.1	0.7	GO:0005845	mRNA cap binding complex(GO:0005845)
0.1	17.7	GO:0030133	transport vesicle(GO:0030133)
0.0	0.3	GO:0034993	microtubule organizing center attachment site(GO:0034992) LINC complex(GO:0034993)
0.0	4.4	GO:0030426	growth cone(GO:0030426)
0.0	10.5	GO:0005874	microtubule(GO:0005874)
0.0	26.4	GO:0045202	synapse(GO:0045202)
0.0	0.8	GO:0005775	vacuolar lumen(GO:0005775)
0.0	2.0	GO:0008076	voltage-gated potassium channel complex(GO:0008076)
0.0	1.9	GO:0005902	microvillus(GO:0005902)
0.0	1.0	GO:0016591	DNA-directed RNA polymerase II, holoenzyme(GO:0016591)
0.0	0.4	GO:0000178	exosome (RNase complex)(GO:0000178)
0.0	0.8	GO:0045171	intercellular bridge(GO:0045171)
0.0	2.8	GO:0044452	nucleolar part(GO:0044452)
0.0	4.6	GO:0009897	external side of plasma membrane(GO:0009897)
0.0	0.6	GO:0000118	histone deacetylase complex(GO:0000118)
0.0	1.1	GO:0016363	nuclear matrix(GO:0016363)
0.0	3.7	GO:0005840	ribosome(GO:0005840)
0.0	5.3	GO:0016604	nuclear body(GO:0016604)
0.0	4.3	GO:0009986	cell surface(GO:0009986)
0.0	6.2	GO:0005730	nucleolus(GO:0005730)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.1	9.3	GO:0004647	phosphoserine phosphatase activity(GO:0004647)
1.8	9.2	GO:0070401	NADP+ binding(GO:0070401)
1.3	8.1	GO:0008467	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity(GO:0008467)
1.3	24.2	GO:0004033	aldo-keto reductase (NADP) activity(GO:0004033)
1.3	18.9	GO:0005092	GDP-dissociation inhibitor activity(GO:0005092)
1.1	4.5	GO:0010465	nerve growth factor receptor activity(GO:0010465) G-protein coupled neurotensin receptor activity(GO:0016492)
1.0	7.1	GO:1990226	histone methyltransferase binding(GO:1990226)
1.0	4.0	GO:0048101	calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity(GO:0048101)
0.8	7.4	GO:0005001	transmembrane receptor protein tyrosine phosphatase activity(GO:0005001) transmembrane receptor protein phosphatase activity(GO:0019198)
0.8	0.8	GO:0032427	GBD domain binding(GO:0032427)
0.8	3.8	GO:1990829	C-rich single-stranded DNA binding(GO:1990829)
0.7	2.9	GO:0004082	bisphosphoglycerate mutase activity(GO:0004082) phosphoglycerate mutase activity(GO:0004619) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity(GO:0046538)
0.7	4.2	GO:0000150	recombinase activity(GO:0000150)
0.7	6.1	GO:0051022	Rho GDP-dissociation inhibitor binding(GO:0051022)
0.7	5.3	GO:0001075	transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly(GO:0001075)
0.6	3.6	GO:0034988	Fc-gamma receptor I complex binding(GO:0034988)
0.5	2.7	GO:0038132	neuregulin binding(GO:0038132)
0.5	16.2	GO:0070412	R-SMAD binding(GO:0070412)
0.5	6.3	GO:0033691	sialic acid binding(GO:0033691)
0.4	4.4	GO:0038036	sphingosine-1-phosphate receptor activity(GO:0038036)
0.4	3.1	GO:0051880	G-quadruplex DNA binding(GO:0051880)
0.4	1.7	GO:0046935	1-phosphatidylinositol-3-kinase regulator activity(GO:0046935)
0.4	3.2	GO:0001055	RNA polymerase II activity(GO:0001055)
0.4	0.8	GO:0034739	histone deacetylase activity (H4-K16 specific)(GO:0034739)
0.4	8.6	GO:0005242	inward rectifier potassium channel activity(GO:0005242)
0.4	13.1	GO:0035035	histone acetyltransferase binding(GO:0035035)
0.3	7.8	GO:0030275	LRR domain binding(GO:0030275)
0.3	7.3	GO:0005159	insulin-like growth factor receptor binding(GO:0005159)
0.3	8.3	GO:0031489	myosin V binding(GO:0031489)
0.3	5.2	GO:0097602	cullin family protein binding(GO:0097602)
0.3	4.0	GO:0030898	actin-dependent ATPase activity(GO:0030898)
0.3	2.0	GO:0001164	RNA polymerase I regulatory region sequence-specific DNA binding(GO:0001163) RNA polymerase I CORE element sequence-specific DNA binding(GO:0001164)
0.2	6.2	GO:0042800	histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.2	5.9	GO:0005112	Notch binding(GO:0005112)
0.2	4.2	GO:0003950	NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.2	1.4	GO:0043426	MRF binding(GO:0043426)
0.2	6.6	GO:0004683	calmodulin-dependent protein kinase activity(GO:0004683)
0.2	5.0	GO:0070530	K63-linked polyubiquitin binding(GO:0070530)
0.2	0.8	GO:0044378	non-sequence-specific DNA binding, bending(GO:0044378)
0.2	1.6	GO:1904264	ubiquitin protein ligase activity involved in ERAD pathway(GO:1904264)
0.2	2.2	GO:0048407	platelet-derived growth factor binding(GO:0048407)
0.2	0.8	GO:0050501	hyaluronan synthase activity(GO:0050501)
0.1	23.0	GO:0051015	actin filament binding(GO:0051015)
0.1	5.4	GO:0001205	transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205)
0.1	2.9	GO:0003746	translation elongation factor activity(GO:0003746)
0.1	3.7	GO:0043027	cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027)
0.1	3.9	GO:0001784	phosphotyrosine binding(GO:0001784)
0.1	4.9	GO:0005164	tumor necrosis factor receptor binding(GO:0005164)
0.1	5.1	GO:0008307	structural constituent of muscle(GO:0008307)
0.1	9.1	GO:0003727	single-stranded RNA binding(GO:0003727)
0.1	3.1	GO:1990841	promoter-specific chromatin binding(GO:1990841)
0.1	0.9	GO:0008429	phosphatidylethanolamine binding(GO:0008429)
0.1	1.0	GO:0070700	BMP receptor binding(GO:0070700)
0.1	12.8	GO:0000149	SNARE binding(GO:0000149)
0.1	13.2	GO:0008201	heparin binding(GO:0008201)
0.1	7.0	GO:0003777	microtubule motor activity(GO:0003777)
0.1	3.8	GO:0003705	transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705)
0.1	9.5	GO:0001078	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)
0.1	2.0	GO:0015269	calcium-activated potassium channel activity(GO:0015269)
0.1	4.1	GO:0001227	transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.1	3.4	GO:0005518	collagen binding(GO:0005518)
0.1	7.0	GO:0004222	metalloendopeptidase activity(GO:0004222)
0.1	6.1	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616)
0.1	6.8	GO:0004702	receptor signaling protein serine/threonine kinase activity(GO:0004702)
0.1	1.3	GO:0004890	GABA-A receptor activity(GO:0004890)
0.0	1.9	GO:0005109	frizzled binding(GO:0005109)
0.0	0.5	GO:0008417	fucosyltransferase activity(GO:0008417)
0.0	1.5	GO:0030331	estrogen receptor binding(GO:0030331)
0.0	0.4	GO:0017091	AU-rich element binding(GO:0017091)
0.0	7.8	GO:0044822	mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822)
0.0	2.7	GO:0001228	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0	9.3	GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0000982)
0.0	0.7	GO:0005537	mannose binding(GO:0005537)
0.0	4.3	GO:0019887	protein kinase regulator activity(GO:0019887)
0.0	0.5	GO:0030742	GTP-dependent protein binding(GO:0030742)
0.0	0.3	GO:0005521	lamin binding(GO:0005521)
0.0	2.6	GO:0016298	lipase activity(GO:0016298)
0.0	1.2	GO:0005201	extracellular matrix structural constituent(GO:0005201)
0.0	6.3	GO:0015631	tubulin binding(GO:0015631)
0.0	4.1	GO:0008022	protein C-terminus binding(GO:0008022)
0.0	11.1	GO:0005509	calcium ion binding(GO:0005509)
0.0	0.3	GO:0015288	porin activity(GO:0015288)
0.0	2.8	GO:0003713	transcription coactivator activity(GO:0003713)
0.0	0.2	GO:0005523	tropomyosin binding(GO:0005523)
0.0	0.7	GO:0003743	translation initiation factor activity(GO:0003743)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	44.8	PID RAC1 PATHWAY	RAC1 signaling pathway
0.6	6.5	PID P38 GAMMA DELTA PATHWAY	Signaling mediated by p38-gamma and p38-delta
0.5	19.4	PID IL8 CXCR2 PATHWAY	IL8- and CXCR2-mediated signaling events
0.5	3.7	SA B CELL RECEPTOR COMPLEXES	Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases.
0.5	16.8	SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES	Genes related to regulation of the actin cytoskeleton
0.4	27.0	PID BCR 5PATHWAY	BCR signaling pathway
0.4	16.6	PID UPA UPAR PATHWAY	Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling
0.3	7.3	SIG IL4RECEPTOR IN B LYPHOCYTES	Genes related to IL4 rceptor signaling in B lymphocytes
0.2	9.0	ST JNK MAPK PATHWAY	JNK MAPK Pathway
0.2	3.1	SA REG CASCADE OF CYCLIN EXPR	Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
0.2	8.0	PID FGF PATHWAY	FGF signaling pathway
0.2	10.9	PID P75 NTR PATHWAY	p75(NTR)-mediated signaling
0.2	6.4	PID IL6 7 PATHWAY	IL6-mediated signaling events
0.2	2.7	PID INTEGRIN4 PATHWAY	Alpha6 beta4 integrin-ligand interactions
0.1	4.2	PID BARD1 PATHWAY	BARD1 signaling events
0.1	1.7	PID FAS PATHWAY	FAS (CD95) signaling pathway
0.1	1.4	PID CIRCADIAN PATHWAY	Circadian rhythm pathway
0.1	1.9	PID CERAMIDE PATHWAY	Ceramide signaling pathway
0.1	3.6	PID NOTCH PATHWAY	Notch signaling pathway
0.1	2.3	PID NFAT TFPATHWAY	Calcineurin-regulated NFAT-dependent transcription in lymphocytes
0.1	2.1	PID RB 1PATHWAY	Regulation of retinoblastoma protein
0.0	0.8	PID HDAC CLASSIII PATHWAY	Signaling events mediated by HDAC Class III
0.0	0.8	PID INSULIN GLUCOSE PATHWAY	Insulin-mediated glucose transport
0.0	7.0	NABA ECM REGULATORS	Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
0.0	4.8	NABA SECRETED FACTORS	Genes encoding secreted soluble factors
0.0	1.1	PID ERA GENOMIC PATHWAY	Validated nuclear estrogen receptor alpha network
0.0	0.7	PID TGFBR PATHWAY	TGF-beta receptor signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	16.6	REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS	Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs)
0.8	13.2	REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS	Genes involved in Cell-extracellular matrix interactions
0.8	9.3	REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS	Genes involved in Purine ribonucleoside monophosphate biosynthesis
0.7	25.7	REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE	Genes involved in Sema4D induced cell migration and growth-cone collapse
0.6	14.7	REACTOME REGULATION OF KIT SIGNALING	Genes involved in Regulation of KIT signaling
0.5	4.3	REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION	Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression
0.5	14.9	REACTOME ADHERENS JUNCTIONS INTERACTIONS	Genes involved in Adherens junctions interactions
0.5	24.2	REACTOME VOLTAGE GATED POTASSIUM CHANNELS	Genes involved in Voltage gated Potassium channels
0.5	5.0	REACTOME IRAK2 MEDIATED ACTIVATION OF TAK1 COMPLEX UPON TLR7 8 OR 9 STIMULATION	Genes involved in IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
0.4	5.6	REACTOME REGULATION OF SIGNALING BY CBL	Genes involved in Regulation of signaling by CBL
0.3	8.6	REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS	Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits
0.3	8.1	REACTOME HS GAG BIOSYNTHESIS	Genes involved in HS-GAG biosynthesis
0.2	6.3	REACTOME BASIGIN INTERACTIONS	Genes involved in Basigin interactions
0.2	7.4	REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS	Genes involved in Association of TriC/CCT with target proteins during biosynthesis
0.2	6.8	REACTOME KINESINS	Genes involved in Kinesins
0.2	5.9	REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS	Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus
0.2	3.2	REACTOME VIRAL MESSENGER RNA SYNTHESIS	Genes involved in Viral Messenger RNA Synthesis
0.2	3.1	REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE	Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.2	2.0	REACTOME RNA POL I TRANSCRIPTION TERMINATION	Genes involved in RNA Polymerase I Transcription Termination
0.2	5.4	REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS	Genes involved in Regulation of gene expression in beta cells
0.2	8.0	REACTOME NCAM1 INTERACTIONS	Genes involved in NCAM1 interactions
0.2	5.3	REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING	Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
0.2	3.7	REACTOME ERK MAPK TARGETS	Genes involved in ERK/MAPK targets
0.2	4.2	REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS	Genes involved in Homologous recombination repair of replication-independent double-strand breaks
0.2	8.1	REACTOME COSTIMULATION BY THE CD28 FAMILY	Genes involved in Costimulation by the CD28 family
0.2	4.0	REACTOME CGMP EFFECTS	Genes involved in cGMP effects
0.1	3.1	REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION	Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
0.1	2.9	REACTOME CYTOSOLIC TRNA AMINOACYLATION	Genes involved in Cytosolic tRNA aminoacylation
0.1	1.6	REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE	Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase
0.1	13.2	REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION	Genes involved in Antigen processing: Ubiquitination & Proteasome degradation
0.0	1.3	REACTOME LIGAND GATED ION CHANNEL TRANSPORT	Genes involved in Ligand-gated ion channel transport
0.0	1.4	REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION	Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.0	0.7	REACTOME DOWNREGULATION OF TGF BETA RECEPTOR SIGNALING	Genes involved in Downregulation of TGF-beta receptor signaling
0.0	2.7	REACTOME INTEGRIN CELL SURFACE INTERACTIONS	Genes involved in Integrin cell surface interactions
0.0	0.8	REACTOME HYALURONAN METABOLISM	Genes involved in Hyaluronan metabolism
0.0	1.4	REACTOME REGULATION OF MRNA STABILITY BY PROTEINS THAT BIND AU RICH ELEMENTS	Genes involved in Regulation of mRNA Stability by Proteins that Bind AU-rich Elements
0.0	1.6	REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S	Genes involved in Activation of Chaperone Genes by XBP1(S)
0.0	1.9	REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS	Genes involved in Class B/2 (Secretin family receptors)
0.0	0.8	REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS	Genes involved in Golgi Associated Vesicle Biogenesis
0.0	0.3	REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY	Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery