GSE53960: rat RNA-Seq transcriptomic Bodymap

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Ovol1 Links NCBI RGD Ensembl	ENSRNOG00000020669	ovo like transcriptional repressor 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Ovol1	rn6_v1_chr1_-_220938814_220938814	-0.18	9.7e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_-_44327551 Show fit	8.63	ENSRNOT00000083939	Gramd1b Links NCBI RGD Ensembl Show fit	GRAM domain containing 1B
chr1_+_17602281 Show fit	4.78	ENSRNOT00000075461	LOC103690149 Links NCBI RGD Ensembl Show fit	jouberin-like
chr6_-_60124274 Show fit	4.10	ENSRNOT00000059823	Lsmem1 Links NCBI RGD Ensembl Show fit	leucine-rich single-pass membrane protein 1
chr4_+_138441332 Show fit	2.94	ENSRNOT00000090847	Cntn4 Links NCBI RGD Ensembl Show fit	contactin 4
chr3_+_95715193 Show fit	2.43	ENSRNOT00000089525	Pax6 Links NCBI RGD Ensembl Show fit	paired box 6
chr14_-_17582823 Show fit	2.35	ENSRNOT00000087686	LOC100911949 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100911949
chr2_-_250778269 Show fit	2.27	ENSRNOT00000085670 ENSRNOT00000083535 ENSRNOT00000017824	Clca5 Links NCBI RGD Ensembl Show fit	chloride channel accessory 5
chr14_+_23480462 Show fit	1.78	ENSRNOT00000002755	Gnrhr Links NCBI RGD Ensembl Show fit	gonadotropin releasing hormone receptor
chr2_-_250805445 Show fit	1.44	ENSRNOT00000055362	Clca4l Links NCBI RGD Ensembl Show fit	chloride channel calcium activated 4-like
chr7_-_140617721 Show fit	1.12	ENSRNOT00000081355	Tuba1b Links NCBI RGD Ensembl Show fit	tubulin, alpha 1B
chr15_-_28155291 Show fit	0.97	ENSRNOT00000050820	Rnase2 Links NCBI RGD Ensembl Show fit	ribonuclease A family member 2
chr13_-_74331214 Show fit	0.83	ENSRNOT00000006018	Fam20b Links NCBI RGD Ensembl Show fit	FAM20B, glycosaminoglycan xylosylkinase
chr3_+_102859815 Show fit	0.70	ENSRNOT00000037906	Olr771 Links NCBI RGD Ensembl Show fit	olfactory receptor 771
chr3_+_77921705 Show fit	0.55	ENSRNOT00000064006	AC132028.1 Links NCBI RGD Ensembl Show fit
chr3_+_75768699 Show fit	0.35	ENSRNOT00000071912	AABR07052798.1 Links NCBI RGD Ensembl Show fit
chr3_+_102553317 Show fit	0.22	ENSRNOT00000043765	Olr753 Links NCBI RGD Ensembl Show fit	olfactory receptor 753
chr3_+_77584990 Show fit	0.21	ENSRNOT00000046926	Olr664 Links NCBI RGD Ensembl Show fit	olfactory receptor 664
chr1_+_79981355 Show fit	0.04	ENSRNOT00000020134	Dmwd Links NCBI RGD Ensembl Show fit	dystrophia myotonica, WD repeat containing
chr18_+_30036887 Show fit	0.03	ENSRNOT00000077824	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	2.4	GO:0021905	pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.2	1.8	GO:0097211	response to gonadotropin-releasing hormone(GO:0097210) cellular response to gonadotropin-releasing hormone(GO:0097211)
0.0	3.7	GO:1902476	chloride transmembrane transport(GO:1902476)
0.0	1.1	GO:0071353	cellular response to interleukin-4(GO:0071353)
0.0	1.8	GO:1903955	positive regulation of protein targeting to mitochondrion(GO:1903955)
0.0	2.9	GO:0007411	axon guidance(GO:0007411)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.9	GO:0031225	anchored component of membrane(GO:0031225)
0.0	1.1	GO:0005881	cytoplasmic microtubule(GO:0005881)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	1.8	GO:0016520	growth hormone-releasing hormone receptor activity(GO:0016520)
0.2	2.4	GO:0003680	AT DNA binding(GO:0003680)
0.2	3.7	GO:0005229	intracellular calcium activated chloride channel activity(GO:0005229)
0.0	1.1	GO:0003725	double-stranded RNA binding(GO:0003725)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.1	PID PRL SIGNALING EVENTS PATHWAY	Signaling events mediated by PRL
0.0	2.4	PID CDC42 PATHWAY	CDC42 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	2.4	REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GIP	Genes involved in Synthesis, Secretion, and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)
0.2	1.8	REACTOME HORMONE LIGAND BINDING RECEPTORS	Genes involved in Hormone ligand-binding receptors
0.1	1.1	REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY	Genes involved in Post-chaperonin tubulin folding pathway