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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for Pou4f3

Z-value: 0.35

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Transcription factors associated with Pou4f3

Gene Symbol Gene ID Gene Info
Pou4f3
ENSRNOG00000018842 POU class 4 homeobox 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Pou4f3rn6_v1_chr18_+_36713869_367138690.081.6e-01Click!

Activity profile of Pou4f3 motif

Sorted Z-values of Pou4f3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chrX_-_142164220 8.07 ENSRNOT00000064780
Fgf13
fibroblast growth factor 13
chr3_+_171213936 8.05 ENSRNOT00000031586
Pck1
phosphoenolpyruvate carboxykinase 1
chr17_-_43543172 7.43 ENSRNOT00000080684
ENSRNOT00000029626
ENSRNOT00000082719
Slc17a3
solute carrier family 17 member 3
chr3_+_159368273 7.21 ENSRNOT00000041688
Sgk2
serum/glucocorticoid regulated kinase 2
chr1_-_253185533 6.43 ENSRNOT00000067822
Pank1
pantothenate kinase 1
chr14_-_19072677 6.41 ENSRNOT00000060548
LOC360919
similar to alpha-fetoprotein
chr17_+_9109731 5.94 ENSRNOT00000016009
Cxcl14
C-X-C motif chemokine ligand 14
chr18_+_17043903 5.42 ENSRNOT00000068139
Fhod3
formin homology 2 domain containing 3
chr20_+_34258791 5.37 ENSRNOT00000000468
Slc35f1
solute carrier family 35, member F1
chr14_-_84334066 5.36 ENSRNOT00000006160
Mtfp1
mitochondrial fission process 1
chr1_-_189182306 5.34 ENSRNOT00000021249
Gp2
glycoprotein 2
chr7_-_50278842 5.01 ENSRNOT00000088950
Syt1
synaptotagmin 1
chr1_-_189181901 5.00 ENSRNOT00000092022
Gp2
glycoprotein 2
chr9_+_73418607 4.99 ENSRNOT00000092547
Map2
microtubule-associated protein 2
chr17_-_79085076 4.90 ENSRNOT00000057851
Fam171a1
family with sequence similarity 171, member A1
chr9_+_73378057 4.76 ENSRNOT00000043627
ENSRNOT00000045766
ENSRNOT00000092445
ENSRNOT00000037974
Map2
microtubule-associated protein 2
chrX_+_20520034 4.74 ENSRNOT00000093170
FAM120C
family with sequence similarity 120C
chr12_+_41486076 4.38 ENSRNOT00000057242
Rita1
RBPJ interacting and tubulin associated 1
chr12_-_5685448 3.60 ENSRNOT00000077167
Fry
FRY microtubule binding protein
chr1_-_148119857 3.56 ENSRNOT00000040325
LOC100361547
Cytochrome P450, family 2, subfamily c, polypeptide 7-like
chr18_+_14757679 3.47 ENSRNOT00000071364
Mapre2
microtubule-associated protein, RP/EB family, member 2
chr19_+_14835822 3.30 ENSRNOT00000072804
1700007B14Rik
RIKEN cDNA 1700007B14 gene
chr10_-_89088993 3.28 ENSRNOT00000027458
Ccr10
C-C motif chemokine receptor 10
chrX_-_40086870 2.73 ENSRNOT00000010027
Smpx
small muscle protein, X-linked
chr10_+_103206014 2.66 ENSRNOT00000004081
Ttyh2
tweety family member 2
chr20_+_10265806 2.42 ENSRNOT00000001564
ENSRNOT00000086272
Ndufv3
NADH:ubiquinone oxidoreductase subunit V3
chr18_+_30840868 2.24 ENSRNOT00000027026
Pcdhga5
protocadherin gamma subfamily A, 5
chr12_-_35979193 2.18 ENSRNOT00000071104
Tmem132b
transmembrane protein 132B
chr2_-_27287605 2.12 ENSRNOT00000034041
Ankdd1b
ankyrin repeat and death domain containing 1B
chr19_-_24614019 2.11 ENSRNOT00000005124
Scoc
short coiled-coil protein
chr5_+_165724027 2.09 ENSRNOT00000018000
Casz1
castor zinc finger 1
chr6_+_127327959 2.04 ENSRNOT00000012296
Ifi27
interferon, alpha-inducible protein 27
chrX_+_17016778 1.87 ENSRNOT00000003989
Bmp15
bone morphogenetic protein 15
chr5_+_145311375 1.80 ENSRNOT00000019224
Smim12
small integral membrane protein 12
chr5_-_12199283 1.72 ENSRNOT00000007769
Pcmtd1
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
chr2_+_239415046 1.60 ENSRNOT00000072196
Cxxc4
CXXC finger protein 4
chr1_+_79631668 1.48 ENSRNOT00000083546
ENSRNOT00000035286
Mill1
MHC I like leukocyte 1
chr7_+_117456039 1.46 ENSRNOT00000051754
Mroh1
maestro heat-like repeat family member 1
chr2_-_105089659 1.43 ENSRNOT00000043381
Cpb1
carboxypeptidase B1
chr3_-_103460529 1.38 ENSRNOT00000047274
LOC100909573
olfactory receptor 4F6-like
chrX_-_76925195 1.36 ENSRNOT00000087977
Atrx
ATRX, chromatin remodeler
chr12_-_39697465 1.32 ENSRNOT00000078683
Vps29
VPS29 retromer complex component
chr7_-_69982592 1.27 ENSRNOT00000040010
RGD1564306
similar to developmental pluripotency associated 5
chr18_+_30017918 1.26 ENSRNOT00000079794
Pcdha4
protocadherin alpha 4
chr18_+_30895831 1.20 ENSRNOT00000026985
Pcdhga10
protocadherin gamma subfamily A, 10
chr1_+_65292386 1.20 ENSRNOT00000029893
AABR07002044.1

chrX_-_64715823 1.20 ENSRNOT00000076297
Asb12
ankyrin repeat and SOCS box-containing 12
chr10_+_29606748 1.18 ENSRNOT00000080720
AABR07029467.2

chr3_-_80933283 1.18 ENSRNOT00000007771
Creb3l1
cAMP responsive element binding protein 3-like 1
chrX_+_65040934 1.15 ENSRNOT00000044006
Zc3h12b
zinc finger CCCH-type containing 12B
chr16_-_75107931 1.15 ENSRNOT00000058066
Defb15
defensin beta 15
chr12_+_10577068 1.14 ENSRNOT00000001282
Rnf6
ring finger protein 6
chr4_-_18396035 1.13 ENSRNOT00000034692
Sema3a
semaphorin 3A
chr4_-_72020642 1.12 ENSRNOT00000075946
Fam115e
family with sequence similarity 115, member E
chrX_+_14019961 1.09 ENSRNOT00000004785
Sytl5
synaptotagmin-like 5
chr19_+_6046665 1.07 ENSRNOT00000084126
Cdh8
cadherin 8
chr16_+_75122996 0.93 ENSRNOT00000018375
Defb15
defensin beta 15
chr8_-_18910837 0.89 ENSRNOT00000044295
Olr1126
olfactory receptor 1126
chr7_+_71157664 0.88 ENSRNOT00000005919
Sdr9c7
short chain dehydrogenase/reductase family 9C, member 7
chr1_+_172348583 0.86 ENSRNOT00000041144
Olr250
olfactory receptor 250
chr16_-_20562399 0.83 ENSRNOT00000031692
Lrrc25
leucine rich repeat containing 25
chr10_-_60309306 0.82 ENSRNOT00000083439
Olr1486
olfactory receptor 1486
chr16_+_84465656 0.79 ENSRNOT00000043188
LOC689713
LRRGT00175
chr6_-_61405195 0.76 ENSRNOT00000008655
Lrrn3
leucine rich repeat neuronal 3
chr1_-_167875501 0.71 ENSRNOT00000078322
Olr62
olfactory receptor 62
chr1_-_168555382 0.67 ENSRNOT00000091916
AC129004.1

chr3_+_55910177 0.64 ENSRNOT00000009969
Klhl41
kelch-like family member 41
chr13_-_102857551 0.61 ENSRNOT00000080309
Mark1
microtubule affinity regulating kinase 1
chr3_-_78271875 0.61 ENSRNOT00000008475
Olr701
olfactory receptor 701
chr10_-_34301197 0.60 ENSRNOT00000044667
Olr1383
olfactory receptor 1383
chr18_+_56544652 0.60 ENSRNOT00000024171
Pde6a
phosphodiesterase 6A
chr3_-_74701712 0.60 ENSRNOT00000041127
Olr541
olfactory receptor 541
chr17_-_4454701 0.51 ENSRNOT00000080750
ENSRNOT00000066950
Dapk1
death associated protein kinase 1
chr18_-_43945273 0.48 ENSRNOT00000088900
Dtwd2
DTW domain containing 2
chr3_-_103217528 0.45 ENSRNOT00000074456
Olr784
olfactory receptor 784
chr1_+_213374895 0.39 ENSRNOT00000041052
Olr311
olfactory receptor 311
chr1_-_167884690 0.38 ENSRNOT00000091372
Olr61
olfactory receptor 61
chr1_-_168587241 0.35 ENSRNOT00000021254
Olr104
olfactory receptor 104
chr8_-_126390801 0.33 ENSRNOT00000089732
AABR07071661.1

chr12_-_46493203 0.24 ENSRNOT00000057036
Cit
citron rho-interacting serine/threonine kinase
chr1_-_190370499 0.23 ENSRNOT00000084389
AABR07005618.1

chr14_-_194072 0.16 ENSRNOT00000073973
Vmn2r112
vomeronasal 2, receptor 112
chr16_+_48513432 0.13 ENSRNOT00000044934
LOC685135
similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9)
chr18_+_73157973 0.10 ENSRNOT00000031993
Skor2
SKI family transcriptional corepressor 2

Network of associatons between targets according to the STRING database.

First level regulatory network of Pou4f3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.6 10.3 GO:0002386 immune response in mucosal-associated lymphoid tissue(GO:0002386)
2.0 8.1 GO:0006114 glycerol biosynthetic process(GO:0006114)
1.2 8.1 GO:0045196 establishment or maintenance of neuroblast polarity(GO:0045196) establishment of neuroblast polarity(GO:0045200)
1.0 5.9 GO:2000503 positive regulation of natural killer cell chemotaxis(GO:2000503)
0.9 3.6 GO:1904428 negative regulation of tubulin deacetylation(GO:1904428)
0.7 2.1 GO:0042706 eye photoreceptor cell fate commitment(GO:0042706) photoreceptor cell fate commitment(GO:0046552)
0.7 7.4 GO:0015747 urate transport(GO:0015747)
0.5 1.4 GO:0035127 post-embryonic appendage morphogenesis(GO:0035120) post-embryonic limb morphogenesis(GO:0035127) post-embryonic forelimb morphogenesis(GO:0035128) telomeric repeat-containing RNA transcription(GO:0097393) telomeric repeat-containing RNA transcription from RNA pol II promoter(GO:0097394) regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901580) negative regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901581) positive regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901582)
0.4 1.9 GO:0060014 granulosa cell differentiation(GO:0060014)
0.4 1.5 GO:0050689 negative regulation of defense response to virus by host(GO:0050689)
0.4 5.4 GO:0051639 actin filament network formation(GO:0051639)
0.4 6.4 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.3 5.0 GO:0031340 positive regulation of vesicle fusion(GO:0031340)
0.3 1.1 GO:0021888 cerebral cortex tangential migration using cell-axon interactions(GO:0021824) gonadotrophin-releasing hormone neuronal migration to the hypothalamus(GO:0021828) hypothalamic tangential migration using cell-axon interactions(GO:0021856) hypothalamus gonadotrophin-releasing hormone neuron differentiation(GO:0021886) hypothalamus gonadotrophin-releasing hormone neuron development(GO:0021888) facioacoustic ganglion development(GO:1903375)
0.3 9.8 GO:0007026 negative regulation of microtubule depolymerization(GO:0007026)
0.2 1.1 GO:0044314 protein K27-linked ubiquitination(GO:0044314)
0.2 2.1 GO:0061635 regulation of protein complex stability(GO:0061635)
0.2 1.2 GO:0070278 extracellular matrix constituent secretion(GO:0070278)
0.1 3.6 GO:0019373 epoxygenase P450 pathway(GO:0019373)
0.1 4.4 GO:0045746 negative regulation of Notch signaling pathway(GO:0045746)
0.1 5.4 GO:0000266 mitochondrial fission(GO:0000266)
0.1 1.3 GO:1990126 retrograde transport, endosome to plasma membrane(GO:1990126)
0.1 0.6 GO:0031272 regulation of pseudopodium assembly(GO:0031272)
0.1 2.0 GO:0046825 regulation of protein export from nucleus(GO:0046825)
0.1 3.3 GO:0070098 chemokine-mediated signaling pathway(GO:0070098)
0.0 6.1 GO:0032411 positive regulation of transporter activity(GO:0032411)
0.0 2.4 GO:0042775 mitochondrial ATP synthesis coupled electron transport(GO:0042775)
0.0 0.5 GO:2000310 regulation of N-methyl-D-aspartate selective glutamate receptor activity(GO:2000310)
0.0 0.6 GO:0046037 GMP metabolic process(GO:0046037)
0.0 2.7 GO:1902476 chloride transmembrane transport(GO:1902476)
0.0 1.1 GO:0048791 calcium ion-regulated exocytosis of neurotransmitter(GO:0048791)
0.0 1.1 GO:0009409 response to cold(GO:0009409)
0.0 2.7 GO:0006941 striated muscle contraction(GO:0006941)
0.0 0.2 GO:0050774 negative regulation of dendrite morphogenesis(GO:0050774)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 9.8 GO:0097442 CA3 pyramidal cell dendrite(GO:0097442)
0.8 5.0 GO:0042584 chromaffin granule membrane(GO:0042584)
0.5 2.7 GO:0005927 muscle tendon junction(GO:0005927)
0.5 1.4 GO:1990707 subtelomeric heterochromatin(GO:1990421) nuclear subtelomeric heterochromatin(GO:1990707)
0.3 1.3 GO:0030906 retromer, cargo-selective complex(GO:0030906)
0.2 5.4 GO:0005865 striated muscle thin filament(GO:0005865)
0.1 7.2 GO:0030118 clathrin coat(GO:0030118)
0.1 11.8 GO:0031225 anchored component of membrane(GO:0031225)
0.1 3.5 GO:0035371 microtubule plus-end(GO:0035371)
0.1 8.1 GO:0014704 intercalated disc(GO:0014704)
0.1 1.1 GO:0043083 synaptic cleft(GO:0043083)
0.0 0.6 GO:0031143 pseudopodium(GO:0031143)
0.0 2.4 GO:0030964 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 2.7 GO:0034707 chloride channel complex(GO:0034707)
0.0 6.6 GO:0016324 apical plasma membrane(GO:0016324)
0.0 3.6 GO:0030427 site of polarized growth(GO:0030427)
0.0 5.4 GO:0005743 mitochondrial inner membrane(GO:0005743)
0.0 1.1 GO:0016605 PML body(GO:0016605)
0.0 2.1 GO:0005802 trans-Golgi network(GO:0005802)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 6.4 GO:0004594 pantothenate kinase activity(GO:0004594)
1.0 5.0 GO:0030348 syntaxin-3 binding(GO:0030348)
0.7 7.4 GO:0015562 urate transmembrane transporter activity(GO:0015143) efflux transmembrane transporter activity(GO:0015562) salt transmembrane transporter activity(GO:1901702)
0.4 1.7 GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity(GO:0004719)
0.4 9.8 GO:0002162 dystroglycan binding(GO:0002162)
0.4 8.1 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.4 7.2 GO:0017081 chloride channel regulator activity(GO:0017081)
0.3 1.4 GO:0015616 DNA translocase activity(GO:0015616)
0.2 3.3 GO:0016493 C-C chemokine receptor activity(GO:0016493)
0.2 8.1 GO:0048487 beta-tubulin binding(GO:0048487)
0.2 5.9 GO:0008009 chemokine activity(GO:0008009)
0.1 11.6 GO:0003823 antigen binding(GO:0003823)
0.1 3.6 GO:0008392 arachidonic acid epoxygenase activity(GO:0008392)
0.1 1.1 GO:0030215 semaphorin receptor binding(GO:0030215)
0.1 1.2 GO:0035497 cAMP response element binding(GO:0035497)
0.1 1.4 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.6 GO:0050321 tau-protein kinase activity(GO:0050321)
0.0 0.6 GO:0047555 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555)
0.0 0.9 GO:0004745 retinol dehydrogenase activity(GO:0004745)
0.0 1.9 GO:0005160 transforming growth factor beta receptor binding(GO:0005160)
0.0 1.1 GO:0050681 androgen receptor binding(GO:0050681)
0.0 2.7 GO:0005254 chloride channel activity(GO:0005254)
0.0 7.8 GO:0015631 tubulin binding(GO:0015631)
0.0 0.5 GO:0017075 syntaxin-1 binding(GO:0017075)
0.0 1.1 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.0 1.8 GO:0030165 PDZ domain binding(GO:0030165)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 9.8 PID LKB1 PATHWAY LKB1 signaling events
0.1 8.1 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.1 5.0 SIG CD40PATHWAYMAP Genes related to CD40 signaling
0.1 2.4 PID HNF3A PATHWAY FOXA1 transcription factor network
0.0 1.6 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.0 14.4 NABA SECRETED FACTORS Genes encoding secreted soluble factors
0.0 0.6 ST WNT CA2 CYCLIC GMP PATHWAY Wnt/Ca2+/cyclic GMP signaling.
0.0 0.5 PID IFNG PATHWAY IFN-gamma pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 8.1 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.5 6.4 REACTOME VITAMIN B5 PANTOTHENATE METABOLISM Genes involved in Vitamin B5 (pantothenate) metabolism
0.4 5.0 REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Norepinephrine Neurotransmitter Release Cycle
0.1 3.3 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.1 1.1 REACTOME CRMPS IN SEMA3A SIGNALING Genes involved in CRMPs in Sema3A signaling
0.0 1.1 REACTOME ADHERENS JUNCTIONS INTERACTIONS Genes involved in Adherens junctions interactions
0.0 2.4 REACTOME RESPIRATORY ELECTRON TRANSPORT Genes involved in Respiratory electron transport
0.0 0.5 REACTOME ROLE OF DCC IN REGULATING APOPTOSIS Genes involved in Role of DCC in regulating apoptosis
0.0 2.0 REACTOME INTERFERON ALPHA BETA SIGNALING Genes involved in Interferon alpha/beta signaling
0.0 0.6 REACTOME CGMP EFFECTS Genes involved in cGMP effects