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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for Sox30

Z-value: 0.69

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Transcription factors associated with Sox30

Gene Symbol Gene ID Gene Info
Sox30
ENSRNOG00000006098 SRY box 30

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Sox30rn6_v1_chr10_+_31074251_31074251-0.036.2e-01Click!

Activity profile of Sox30 motif

Sorted Z-values of Sox30 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr3_-_44086006 37.50 ENSRNOT00000034449
ENSRNOT00000082604
Ermn
ermin
chr1_+_12915734 37.48 ENSRNOT00000089066
Txlnb
taxilin beta
chr5_+_64326733 24.35 ENSRNOT00000065775
Tmeff1
transmembrane protein with EGF-like and two follistatin-like domains 1
chr5_+_90338795 22.62 ENSRNOT00000077864
ENSRNOT00000058882
LOC298139
similar to RIKEN cDNA 2310003M01
chr4_-_11610518 18.18 ENSRNOT00000066643
Magi2
membrane associated guanylate kinase, WW and PDZ domain containing 2
chr5_-_133959447 17.41 ENSRNOT00000011985
Cyp4x1
cytochrome P450, family 4, subfamily x, polypeptide 1
chr9_+_73418607 16.77 ENSRNOT00000092547
Map2
microtubule-associated protein 2
chr10_+_82775691 15.74 ENSRNOT00000030737
Hils1
histone linker H1 domain, spermatid-specific 1
chr4_-_39102807 15.16 ENSRNOT00000052063
Thsd7a
thrombospondin type 1 domain containing 7A
chr13_+_87986240 14.99 ENSRNOT00000003705
Rgs5
regulator of G-protein signaling 5
chr13_+_57243877 14.82 ENSRNOT00000083693
Kcnt2
potassium sodium-activated channel subfamily T member 2
chr14_-_84106997 14.70 ENSRNOT00000065501
Osbp2
oxysterol binding protein 2
chr10_+_53778662 14.44 ENSRNOT00000045718
Myh2
myosin heavy chain 2
chr7_+_130042947 12.55 ENSRNOT00000089707
Panx2
pannexin 2
chr6_-_137084739 12.24 ENSRNOT00000060943
Tmem179
transmembrane protein 179
chr3_-_72219246 11.33 ENSRNOT00000009903
Smtnl1
smoothelin-like 1
chrX_+_62727755 11.11 ENSRNOT00000077055
Pcyt1b
phosphate cytidylyltransferase 1, choline, beta
chr4_-_166803127 10.58 ENSRNOT00000067909
RGD1306750
LOC362451
chr18_+_30826260 9.95 ENSRNOT00000065235
Pcdhgb1
protocadherin gamma subfamily B, 1
chr8_-_62987182 9.67 ENSRNOT00000070885
Islr2
immunoglobulin superfamily containing leucine-rich repeat 2
chrM_+_3904 9.18 ENSRNOT00000040993
Mt-nd2
mitochondrially encoded NADH dehydrogenase 2
chr2_-_117454769 8.16 ENSRNOT00000068381
Mecom
MDS1 and EVI1 complex locus
chr18_+_28781349 7.80 ENSRNOT00000026112
Psd2
pleckstrin and Sec7 domain containing 2
chr8_-_90664554 6.57 ENSRNOT00000039917
ENSRNOT00000074896
ENSRNOT00000072225
Hmgn3
high mobility group nucleosomal binding domain 3
chr4_-_51199570 6.54 ENSRNOT00000010788
Slc13a1
solute carrier family 13 member 1
chr6_-_51019407 6.47 ENSRNOT00000011659
Gpr22
G protein-coupled receptor 22
chr7_-_107223047 6.16 ENSRNOT00000007250
ENSRNOT00000084875
Lrrc6
leucine rich repeat containing 6
chr5_+_152606847 5.61 ENSRNOT00000089070
Pafah2
platelet-activating factor acetylhydrolase 2
chr18_+_30875011 5.28 ENSRNOT00000027009
Pcdhga8
protocadherin gamma subfamily A, 8
chr18_+_30890869 4.98 ENSRNOT00000060466
Pcdhgb6
protocadherin gamma subfamily B, 6
chr2_+_188087486 4.41 ENSRNOT00000027455
Rit1
Ras-like without CAAX 1
chr10_-_11005952 3.82 ENSRNOT00000005031
Hmox2
heme oxygenase 2
chr2_+_189865915 3.69 ENSRNOT00000077362
Ilf2
interleukin enhancer binding factor 2
chr2_+_93520734 3.68 ENSRNOT00000083909
Snx16
sorting nexin 16
chrX_+_70596576 3.68 ENSRNOT00000045082
ENSRNOT00000003741
ENSRNOT00000076079
Dlg3
discs large MAGUK scaffold protein 3
chr6_-_41039437 3.67 ENSRNOT00000005774
Trib2
tribbles pseudokinase 2
chr1_-_171009670 2.70 ENSRNOT00000026487
Olr222
olfactory receptor 222
chr1_+_13595295 2.06 ENSRNOT00000079250
Nhsl1
NHS-like 1
chr3_-_76250840 1.34 ENSRNOT00000007782
Olr607
olfactory receptor 607
chr4_-_165747201 1.01 ENSRNOT00000007435
Tas2r130
taste receptor, type 2, member 130
chr7_-_9136515 0.57 ENSRNOT00000081964
Olr1059
olfactory receptor 1059
chr11_-_70585053 0.47 ENSRNOT00000086955
Zfp148
zinc finger protein 148
chr6_-_104290579 0.44 ENSRNOT00000066014
Erh
enhancer of rudimentary homolog (Drosophila)
chr14_-_81399353 0.30 ENSRNOT00000018340
Add1
adducin 1
chr7_+_4620033 0.16 ENSRNOT00000072277
AABR07055511.1

chr5_-_157059508 0.15 ENSRNOT00000022282
Vwa5b1
von Willebrand factor A domain containing 5B1
chr16_+_74237001 0.08 ENSRNOT00000026039
Polb
DNA polymerase beta

Network of associatons between targets according to the STRING database.

First level regulatory network of Sox30

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.3 18.2 GO:0097118 neuroligin clustering involved in postsynaptic membrane assembly(GO:0097118)
1.4 12.5 GO:0034214 protein hexamerization(GO:0034214)
1.3 3.8 GO:0006788 heme oxidation(GO:0006788)
1.2 11.1 GO:1904116 response to vasopressin(GO:1904116)
1.1 14.4 GO:0001778 plasma membrane repair(GO:0001778)
0.9 3.7 GO:0045074 interleukin-10 biosynthetic process(GO:0042091) regulation of interleukin-10 biosynthetic process(GO:0045074)
0.9 8.2 GO:0090336 positive regulation of brown fat cell differentiation(GO:0090336)
0.7 6.2 GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry(GO:0060287)
0.4 15.7 GO:0030261 chromosome condensation(GO:0030261)
0.4 16.8 GO:0007026 negative regulation of microtubule depolymerization(GO:0007026)
0.4 9.2 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.4 6.5 GO:1902358 sulfate transmembrane transport(GO:1902358)
0.3 3.7 GO:0046710 GDP metabolic process(GO:0046710)
0.3 7.8 GO:0032012 regulation of ARF protein signal transduction(GO:0032012)
0.3 15.0 GO:0045744 negative regulation of G-protein coupled receptor protein signaling pathway(GO:0045744)
0.2 37.5 GO:0008360 regulation of cell shape(GO:0008360)
0.2 3.7 GO:0006622 protein targeting to lysosome(GO:0006622)
0.2 8.0 GO:0045907 positive regulation of vasoconstriction(GO:0045907)
0.1 9.7 GO:0045773 positive regulation of axon extension(GO:0045773)
0.1 22.6 GO:0031032 actomyosin structure organization(GO:0031032)
0.1 6.6 GO:0061178 regulation of insulin secretion involved in cellular response to glucose stimulus(GO:0061178)
0.1 14.7 GO:0007286 spermatid development(GO:0007286)
0.1 14.8 GO:0071804 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.1 0.3 GO:1901552 positive regulation of endothelial cell development(GO:1901552) positive regulation of establishment of endothelial barrier(GO:1903142)
0.0 1.0 GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste(GO:0001580)
0.0 5.0 GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156)
0.0 0.4 GO:0006221 pyrimidine nucleotide biosynthetic process(GO:0006221)
0.0 4.4 GO:0007265 Ras protein signal transduction(GO:0007265)
0.0 0.1 GO:0006287 base-excision repair, gap-filling(GO:0006287)
0.0 2.4 GO:0016042 lipid catabolic process(GO:0016042)
0.0 14.3 GO:0055114 oxidation-reduction process(GO:0055114)
0.0 6.5 GO:1901652 response to peptide(GO:1901652)
0.0 0.5 GO:0021762 substantia nigra development(GO:0021762)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
6.2 37.5 GO:0033269 internode region of axon(GO:0033269)
1.9 16.8 GO:0097442 CA3 pyramidal cell dendrite(GO:0097442)
1.8 18.2 GO:0036057 filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057)
1.6 14.4 GO:0005826 actomyosin contractile ring(GO:0005826)
0.7 15.7 GO:0001673 male germ cell nucleus(GO:0001673)
0.5 14.7 GO:0097440 apical dendrite(GO:0097440)
0.4 3.7 GO:0031313 extrinsic component of endosome membrane(GO:0031313)
0.4 12.5 GO:0005921 gap junction(GO:0005921)
0.4 11.3 GO:0031430 M band(GO:0031430)
0.2 9.2 GO:0005747 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.1 14.8 GO:0008076 voltage-gated potassium channel complex(GO:0008076)
0.1 3.7 GO:0032281 AMPA glutamate receptor complex(GO:0032281)
0.1 8.2 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.3 GO:0008290 F-actin capping protein complex(GO:0008290)
0.0 0.4 GO:0034709 methylosome(GO:0034709)
0.0 17.4 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 18.0 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 6.6 GO:0000785 chromatin(GO:0000785)
0.0 22.6 GO:0005739 mitochondrion(GO:0005739)
0.0 6.2 GO:0005929 cilium(GO:0005929)
0.0 4.5 GO:0030425 dendrite(GO:0030425)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
4.5 18.2 GO:0070699 type II activin receptor binding(GO:0070699)
3.1 12.5 GO:0055077 gap junction hemi-channel activity(GO:0055077)
2.2 11.1 GO:0004105 choline-phosphate cytidylyltransferase activity(GO:0004105)
1.3 3.8 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.9 5.6 GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity(GO:0003847)
0.7 16.8 GO:0002162 dystroglycan binding(GO:0002162)
0.6 11.3 GO:0005523 tropomyosin binding(GO:0005523)
0.5 14.8 GO:0015269 calcium-activated potassium channel activity(GO:0015269)
0.4 17.4 GO:0070330 aromatase activity(GO:0070330)
0.4 6.5 GO:0008271 secondary active sulfate transmembrane transporter activity(GO:0008271)
0.4 3.7 GO:0004385 guanylate kinase activity(GO:0004385)
0.3 9.2 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.3 14.7 GO:0015485 cholesterol binding(GO:0015485)
0.3 37.5 GO:0019905 syntaxin binding(GO:0019905)
0.3 7.8 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.2 37.8 GO:0051015 actin filament binding(GO:0051015)
0.2 22.6 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.2 6.6 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.2 3.7 GO:0055106 ubiquitin-protein transferase regulator activity(GO:0055106)
0.1 15.7 GO:0042393 histone binding(GO:0042393)
0.1 1.0 GO:0033038 bitter taste receptor activity(GO:0033038)
0.1 14.4 GO:0003779 actin binding(GO:0003779)
0.0 3.7 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 7.4 GO:0005096 GTPase activator activity(GO:0005096)
0.0 0.4 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 3.7 GO:0035091 phosphatidylinositol binding(GO:0035091)
0.0 4.4 GO:0003924 GTPase activity(GO:0003924)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 14.4 PID INTEGRIN A4B1 PATHWAY Alpha4 beta1 integrin signaling events
0.3 16.8 PID LKB1 PATHWAY LKB1 signaling events
0.1 4.4 PID MAPK TRK PATHWAY Trk receptor signaling mediated by the MAPK pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 18.2 REACTOME NEPHRIN INTERACTIONS Genes involved in Nephrin interactions
0.5 6.5 REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS Genes involved in Bile salt and organic anion SLC transporters
0.4 11.1 REACTOME SYNTHESIS OF PC Genes involved in Synthesis of PC
0.2 3.7 REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS Genes involved in Ionotropic activity of Kainate Receptors
0.2 4.4 REACTOME SIGNALLING TO P38 VIA RIT AND RIN Genes involved in Signalling to p38 via RIT and RIN
0.1 3.8 REACTOME IRON UPTAKE AND TRANSPORT Genes involved in Iron uptake and transport
0.0 12.5 REACTOME NEURONAL SYSTEM Genes involved in Neuronal System
0.0 0.3 REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS Genes involved in Caspase-mediated cleavage of cytoskeletal proteins